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ONTOLOGY REPORT - ANNOTATIONS

Term:lipopolysaccharide binding
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Accession:GO:0001530 term browser browse the term
Definition:Binding to a lipopolysaccharide.
Synonyms:exact_synonym: LPS binding
 broad_synonym: endotoxin binding


show annotations for term's descendants           Sort by:
lipopolysaccharide binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRB1 adhesion G protein-coupled receptor B1 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:1,582,321...1,658,639
Ensembl chr 4:1,582,330...1,647,573 		JBrowse link
G BPI bactericidal permeability increasing protein enables ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:15009116 GO_REF:0000033 GO_REF:0000118 RGD:1303979 NCBI chr17:41,344,878...41,392,103
Ensembl chr17:41,344,939...41,392,100 		JBrowse link
G BPIFA2 BPI fold containing family A member 2 enables IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:36,690,008...36,699,989
Ensembl chr17:36,690,008...36,699,988 		JBrowse link
G CD14 CD14 molecule enables IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:142,348,036...142,349,686
Ensembl chr 2:142,346,360...142,349,581 		JBrowse link
G CD6 CD6 molecule enables IEA Ensembl GO_REF:0000107 NCBI chr 2:10,739,560...10,785,548
Ensembl chr 2:10,738,471...10,785,516 		JBrowse link
G DEFB114 defensin beta 114 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:43,982,219...43,993,156
Ensembl chr 7:43,982,233...43,993,156 		JBrowse link
G DEFB136 defensin beta 136 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:15,109,961...15,110,778
Ensembl chr14:15,109,002...15,110,878 		JBrowse link
G DMBT1 deleted in malignant brain tumors 1 enables ISO (PMID:19189310) UniProt PMID:19189310 NCBI chr14:132,154,346...132,231,274 JBrowse link
G DROSHA drosha ribonuclease III enables IEA Ensembl GO_REF:0000107 NCBI chr16:17,727,695...17,847,954
Ensembl chr16:17,565,137...17,848,162 		JBrowse link
G F2 coagulation factor II, thrombin enables IEA Ensembl GO_REF:0000107 NCBI chr 2:15,793,257...15,819,151
Ensembl chr 2:15,791,455...15,819,137 		JBrowse link
G GBP1 guanylate binding protein 1, interferon-inducible enables IEA Ensembl GO_REF:0000107 NCBI chr 4:127,425,699...127,442,132
Ensembl chr 4:127,425,200...127,442,127 		JBrowse link
G H2BC11 H2B clustered histone 11 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:21,219,729...21,220,563
Ensembl chr 7:21,220,123...21,220,503 		JBrowse link
G HMGB1 high mobility group box 1 enables ISO (PMID:21660935) UniProt PMID:21660935 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HSPD1 heat shock protein family D (Hsp60) member 1 enables ISO (MGI:3708392|PMID:17164250)
(PMID:17164250)		 BHF-UCL PMID:17164250 MGI:3708392 NCBI chr15:101,360,355...101,373,498
Ensembl chr15:101,360,094...101,373,526 		JBrowse link
G LBP lipopolysaccharide binding protein enables ISO
IEA
IBA		 RGD
UniProt
Ensembl
GO_Central
TreeGrafter		 PMID:22580761 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:9685189 NCBI chr17:41,398,935...41,429,467
Ensembl chr17:41,393,818...41,429,551 		JBrowse link
G LOC100157086 beta-defensin 119 enables IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:35,131,724...35,142,093
Ensembl chr17:35,131,725...35,142,082 		JBrowse link
G LOC100522887 caspase-13 enables ISO (MGI:7428529|PMID:25119034), (MGI:7463870|PMID:37001519)
(PMID:25119034), (PMID:37993712)		 UniProt PMID:25119034 PMID:37001519 PMID:37993712 MGI:7428529 MGI:7463870 NCBI chr 9:35,167,567...35,185,791 JBrowse link
G LOC100621695 uncharacterized LOC100621695 enables ISO (PMID:33181266) UniProt PMID:33181266 NCBI chr17:35,167,885...35,173,855 JBrowse link
G LOC100736951 15 kDa protein B-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:30,167,710...30,173,087 JBrowse link
G LOC102159373 protegrin-1 enables IEA TreeGrafter GO_REF:0000118
G LOC102163838 non-secretory ribonuclease-like enables ISO (PMID:23992292) UniProt PMID:23992292 NCBI chr 7:78,179,285...78,180,221 JBrowse link
G LOC110255221 antibacterial peptide PMAP-37 enables IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:31,011,029...31,013,164 JBrowse link
G LOC110256441 protegrin-3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:30,975,786...30,977,844
Ensembl chr13:30,932,232...30,987,873 		JBrowse link
G LOC110257188 beta-defensin 15-like enables ISO (PMID:24189797) UniProt PMID:24189797 NCBI chr15:37,989,086...37,996,091 JBrowse link
G LOC110258648 protegrin-1 enables IEA TreeGrafter GO_REF:0000118
G LOC110258649 protegrin-3-like enables IEA TreeGrafter GO_REF:0000118
G LOC110258650 protegrin-3-like enables IEA TreeGrafter GO_REF:0000118
G LOC110258651 protegrin-1-like enables IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118
G LTF lactotransferrin enables IEA Ensembl GO_REF:0000107 NCBI chr13:29,413,886...29,445,751
Ensembl chr13:29,413,886...29,445,739 		JBrowse link
G LY96 lymphocyte antigen 96 enables IEA InterPro GO_REF:0000002 NCBI chr 4:61,919,806...61,950,712
Ensembl chr 4:61,926,064...61,950,697 		JBrowse link
G NINJ1 ninjurin 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:42,654,536...42,672,830
Ensembl chr 3:42,654,228...42,672,778 		JBrowse link
G NLRP6 NLR family pyrin domain containing 6 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:90,001...97,441
Ensembl chr 2:90,027...97,439 		JBrowse link
G NPG1 protegrin 1 enables IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:30,986,030...30,987,871
Ensembl chr13:30,986,030...30,987,871 		JBrowse link
G NPG3-PG-2 protegrin 3 enables IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 Ensembl chr13:30,932,232...30,987,873 JBrowse link
G NPG4 protegrin 4 enables IBA GO_Central GO_REF:0000033 NCBI chr13:30,932,411...30,934,626
Ensembl chr13:30,932,232...30,987,873 		JBrowse link
G NR4A1 nuclear receptor subfamily 4, group A, member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:17,403,088...17,407,918
Ensembl chr 5:17,385,390...17,408,511 		JBrowse link
G P2RX7 purinergic receptor P2X 7 enables IEA Ensembl GO_REF:0000107 NCBI chr14:31,415,188...31,476,502
Ensembl chr14:31,415,193...31,476,472 		JBrowse link
G PMAP-23 antibacterial protein enables IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:30,959,802...30,961,519
Ensembl chr13:30,959,616...30,961,514 		JBrowse link
G PMAP-36 antibacterial peptide enables IBA GO_Central GO_REF:0000033 NCBI chr13:30,991,289...30,993,023
Ensembl chr13:30,991,284...30,993,018 		JBrowse link
G PR39 peptide antibiotic PR39 enables IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:30,937,930...30,957,127 JBrowse link
G PSMA1 proteasome 20S subunit alpha 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:44,740,102...44,755,296
Ensembl chr 2:44,648,247...44,757,440 		JBrowse link
G PSMB4 proteasome 20S subunit beta 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:97,835,544...97,837,909
Ensembl chr 4:97,835,547...97,837,921 		JBrowse link
G PTAFR platelet activating factor receptor enables IEA Ensembl GO_REF:0000107 NCBI chr 6:85,235,390...85,272,360
Ensembl chr 6:85,235,394...85,261,760 		JBrowse link
G SCARB1 scavenger receptor class B member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:28,301,421...28,393,568
Ensembl chr14:28,301,294...28,393,568 		JBrowse link
G SELP selectin P enables IEA Ensembl GO_REF:0000107 NCBI chr 4:81,376,804...81,401,240
Ensembl chr 4:81,365,740...81,399,955 		JBrowse link
G SFTPD surfactant protein D ISO RGD PMID:18092821 RGD:4143524 NCBI chr14:82,051,400...82,069,258
Ensembl chr14:82,051,451...82,067,976 		JBrowse link
G SPON2 spondin 2 enables ISO (PMID:14691481) MGI PMID:14691481 NCBI chr 8:447,176...450,829
Ensembl chr 8:447,180...450,538 		JBrowse link
G TLR2 toll like receptor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:75,416,257...75,428,370
Ensembl chr 8:75,411,993...75,428,330 		JBrowse link
G TLR4 toll like receptor 4 enables ISO
IEA
IBA		 E. coli K12 LPS RGD
Ensembl
GO_Central
TreeGrafter		 PMID:16973131 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1643119 NCBI chr 1:258,044,610...258,054,641
Ensembl chr 1:258,044,610...258,058,970 		JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 enables ISO (MGI:5572888|PMID:12847223), (PMID:19079182) BHF-UCL PMID:12847223 PMID:19079182 MGI:5572888 NCBI chr 7:36,465,921...36,471,509
Ensembl chr 7:36,465,324...36,471,516 		JBrowse link
G TRIL TLR4 interactor with leucine rich repeats enables IEA TreeGrafter GO_REF:0000118 NCBI chr18:43,725,910...43,833,993 JBrowse link
G ZRANB2 zinc finger RANBP2-type containing 2 enables IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:141,927,233...141,947,766
Ensembl chr 6:141,927,495...141,947,764 		JBrowse link
Term paths to the root
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Term Annotations click to browse term
  molecular_function 18690
    binding 16249
      carbohydrate derivative binding 2158
        lipopolysaccharide binding 52
paths to the root