H2BC11 (H2B clustered histone 11) - Rat Genome Database

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Gene: H2BC11 (H2B clustered histone 11) Sus scrofa
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Symbol: H2BC11
Name: H2B clustered histone 11
RGD ID: 13871792
Description: ENCODES a protein that exhibits DNA binding (inferred); lipopolysaccharide binding (inferred); protein heterodimerization activity (inferred); INVOLVED IN antibacterial humoral response (inferred); antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); defense response to Gram-negative bacterium (inferred); FOUND IN CENP-A containing nucleosome (inferred); chromosome (inferred); cytosol (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1-J; LOC110261670
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl721,220,123 - 21,220,503 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1721,219,729 - 21,220,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
H2BC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl721,220,123 - 21,220,503 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1721,219,729 - 21,220,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
H2BC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,132,316 - 27,132,795 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,122,657 - 27,132,795 (-)EnsemblGRCh38hg38GRCh38
GRCh37627,100,095 - 27,100,574 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,208,074 - 27,208,554 (-)NCBINCBI36Build 36hg18NCBI36
Build 34627,208,073 - 27,208,554NCBI
Celera628,706,094 - 28,706,574 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef626,908,156 - 26,908,636 (-)NCBIHuRef
CHM1_1627,102,417 - 27,102,897 (-)NCBICHM1_1
T2T-CHM13v2.0627,001,131 - 27,001,610 (-)NCBIT2T-CHM13v2.0
H2bc21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,128,435 - 96,131,057 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,128,435 - 96,131,054 (+)EnsemblGRCm39 Ensembl
GRCm38396,221,072 - 96,223,738 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,221,119 - 96,223,738 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,025,044 - 96,027,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,306,526 - 96,309,143 (+)NCBIMGSCv36mm8
Celera397,651,223 - 97,653,841 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.67NCBI
Hist2h2be
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,469,452 - 186,471,899 (+)NCBIGRCr8
mRatBN7.22183,780,583 - 183,783,030 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.02198,360,837 - 198,363,399 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,360,998 - 198,361,378 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,846,629 - 217,849,158 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,024,190 - 191,026,614 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2176,308,071 - 176,310,633 (+)NCBICelera
Cytogenetic Map2q34NCBI
LOC100981494
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2541,771,668 - 41,778,598 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1637,779,601 - 37,780,067 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0626,958,944 - 26,966,117 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1627,620,306 - 27,627,777 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl627,627,323 - 27,627,703 (-)Ensemblpanpan1.1panPan2
H2BC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13524,540,629 - 24,543,786 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3524,398,133 - 24,399,997 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03524,724,421 - 24,726,416 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13524,505,366 - 24,507,369 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03524,557,553 - 24,559,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,022,425 - 26,024,476 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in H2BC11
15 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021099843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000094462   ⟹   ENSSSCP00000080955
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl721,220,123 - 21,220,503 (-)Ensembl
RefSeq Acc Id: XM_021099843   ⟹   XP_020955502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1721,219,729 - 21,220,563 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000080955
  ENSSSCP00000080955.1
  ENSSSCP00025021840.1
  ENSSSCP00030030690.1
  ENSSSCP00050047829.1
  ENSSSCP00060005701.1
  ENSSSCP00065030724.1
RefSeq Acc Id: XP_020955502   ⟸   XM_021099843
- UniProtKB: A0A8W4FNL8 (UniProtKB/TrEMBL),   A0A8D0S0K4 (UniProtKB/TrEMBL),   A0A8D0X504 (UniProtKB/TrEMBL),   A0A8D1SZF9 (UniProtKB/TrEMBL),   A0A8D1TRX9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000080955   ⟸   ENSSSCT00000094462
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000054132 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025037637 UniProtKB/TrEMBL
  ENSSSCG00030047979 UniProtKB/TrEMBL
  ENSSSCG00050078374 UniProtKB/TrEMBL
  ENSSSCG00060011260 UniProtKB/TrEMBL
  ENSSSCG00065051439 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000094462 ENTREZGENE
  ENSSSCT00000094462.1 UniProtKB/TrEMBL
  ENSSSCT00025051185.1 UniProtKB/TrEMBL
  ENSSSCT00030066996.1 UniProtKB/TrEMBL
  ENSSSCT00050107976.1 UniProtKB/TrEMBL
  ENSSSCT00060014684.1 UniProtKB/TrEMBL
  ENSSSCT00065070459.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
  HISTONE_H2B_site UniProtKB/TrEMBL
NCBI Gene LOC110261670 ENTREZGENE
PANTHER PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A8D0S0K4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X504 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SZF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TRX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FNL8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:109818 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2BC11  H2B clustered histone 11  LOC110261670  histone H2B type 1-J  Symbol and/or name change 19259463 PROVISIONAL