LOC110256441 (protegrin-3) - Rat Genome Database

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Gene: LOC110256441 (protegrin-3) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC110256441 (Ensembl: NPG3)
Name: protegrin-3 (Ensembl:protegrin 4)
RGD ID: 14175015
Description: ENCODES a protein that exhibits lipopolysaccharide binding (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); defense response (inferred); defense response to bacterium (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,932,232 - 30,987,873 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,975,786 - 30,977,844 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC110256441
28 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021070622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021070622   ⟹   XP_020926281
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11330,975,786 - 30,977,844 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020926281 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000012102
  ENSSSCP00000012102.4
  ENSSSCP00000064486.2
  ENSSSCP00000078213.1
  ENSSSCP00000079454.1
  ENSSSCP00000080483.1
  ENSSSCP00070018089.1
Reference Protein Sequences
RefSeq Acc Id: XP_020926281   ⟸   XM_021070622
- UniProtKB: A0A900P5B2 (UniProtKB/TrEMBL),   A0A4X1TPF0 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011349 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00000058176 UniProtKB/TrEMBL
  ENSSSCG00000059830 UniProtKB/TrEMBL
  ENSSSCG00070011176 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012426 ENTREZGENE
  ENSSSCT00000012426.6 UniProtKB/TrEMBL
  ENSSSCT00000080137.2 UniProtKB/TrEMBL
  ENSSSCT00000092175.1 UniProtKB/TrEMBL
  ENSSSCT00000099825.1 UniProtKB/TrEMBL
  ENSSSCT00000101317.1 UniProtKB/TrEMBL
  ENSSSCT00070021848.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Cathelicidin UniProtKB/TrEMBL
  Cathelicidin_CS UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
NCBI Gene LOC110256441 ENTREZGENE
PANTHER CATHELICIDIN ANTIMICROBIAL PEPTIDE UniProtKB/TrEMBL
  PTHR10206 UniProtKB/TrEMBL
Pfam Cathelicidins UniProtKB/TrEMBL
PROSITE CATHELICIDINS_1 UniProtKB/TrEMBL
  CATHELICIDINS_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A4X1TPF0 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QR04_PIG UniProtKB/TrEMBL
  A0A8W4FMR2_PIG UniProtKB/TrEMBL
  A0A900P5B2 ENTREZGENE, UniProtKB/TrEMBL