NINJ1 (ninjurin 1) - Rat Genome Database

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Gene: NINJ1 (ninjurin 1) Sus scrofa
Analyze
Symbol: NINJ1
Name: ninjurin 1
RGD ID: 14152399
Description: ENCODES a protein that exhibits cell-cell adhesion mediator activity (ortholog); INVOLVED IN chemotaxis (ortholog); heterotypic cell-cell adhesion (ortholog); hyaloid vascular plexus regression (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN extracellular region (ortholog); filopodium membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ninjurin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,654,228 - 42,672,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,654,536 - 42,672,830 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NINJ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,654,228 - 42,672,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,654,536 - 42,672,830 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NINJ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38993,121,496 - 93,134,251 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl993,121,496 - 93,134,251 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,883,778 - 95,896,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,923,592 - 94,936,391 (-)NCBINCBI36Build 36hg18NCBI36
Build 34992,963,334 - 92,976,125NCBI
Celera966,325,478 - 66,338,278 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef965,560,157 - 65,572,990 (-)NCBIHuRef
CHM1_1996,030,378 - 96,043,177 (-)NCBICHM1_1
T2T-CHM13v2.09105,288,107 - 105,300,864 (-)NCBIT2T-CHM13v2.0
Ninj1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,341,005 - 49,349,727 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,340,961 - 49,349,720 (+)EnsemblGRCm39 Ensembl
GRCm381349,187,529 - 49,196,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,187,485 - 49,196,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,282,916 - 49,291,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,199,484 - 49,208,188 (+)NCBIMGSCv36mm8
Celera1350,277,705 - 50,286,409 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.14NCBI
Ninj1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,659,208 - 15,668,115 (-)NCBIGRCr8
mRatBN7.21715,452,804 - 15,461,684 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,452,813 - 15,461,704 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,339,900 - 15,348,710 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,944,942 - 16,953,752 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,266,672 - 15,275,482 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01715,866,235 - 15,881,284 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,866,237 - 15,881,327 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,930,052 - 17,945,126 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,410,701 - 21,419,472 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11721,410,700 - 21,419,472 (-)NCBI
Celera1715,182,635 - 15,191,450 (-)NCBICelera
Cytogenetic Map17p14NCBI
Ninj1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555154,892,039 - 4,907,323 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555154,892,748 - 4,905,627 (+)NCBIChiLan1.0ChiLan1.0
NINJ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21146,293,062 - 46,306,329 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1946,295,457 - 46,308,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0964,245,086 - 64,258,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1992,311,502 - 92,324,025 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl992,311,502 - 92,324,030 (-)Ensemblpanpan1.1panPan2
NINJ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,566,520 - 98,576,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,567,680 - 98,576,657 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,960,941 - 98,970,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,183,728 - 99,193,686 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1198,797,064 - 98,806,858 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,532,406 - 98,542,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,288,008 - 99,297,814 (+)NCBIUU_Cfam_GSD_1.0
Ninj1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,270,364 - 8,275,943 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,487,904 - 2,491,827 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,486,831 - 2,531,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NINJ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,509,950 - 103,523,158 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12103,510,454 - 103,523,084 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603891,784,589 - 91,798,519 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ninj1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,430,209 - 3,445,542 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,430,539 - 3,442,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NINJ1
151 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 3 3 5 2 23 2 3 3
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000056501   ⟹   ENSSSCP00000039159
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl342,642,101 - 42,673,002 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000095433   ⟹   ENSSSCP00000079943
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl342,654,228 - 42,672,778 (-)Ensembl
RefSeq Acc Id: XM_021088144   ⟹   XP_020943803
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,659,852 - 42,672,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021088145   ⟹   XP_020943804
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,654,536 - 42,672,830 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020943804   ⟸   XM_021088145
- UniProtKB: A0A4X1UBH5 (UniProtKB/TrEMBL),   A0A8W4FM15 (UniProtKB/TrEMBL),   A0A8D0JNI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943803   ⟸   XM_021088144
- UniProtKB: A0A4X1UBH5 (UniProtKB/TrEMBL),   A0A8W4FM15 (UniProtKB/TrEMBL),   A0A8D0JNI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039159   ⟸   ENSSSCT00000056501
RefSeq Acc Id: ENSSSCP00000079943   ⟸   ENSSSCT00000095433


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040061 Ensembl
  ENSSSCG00000063184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005027824 UniProtKB/TrEMBL
  ENSSSCG00015073222 UniProtKB/TrEMBL
  ENSSSCG00025012422 UniProtKB/TrEMBL
  ENSSSCG00030046697 UniProtKB/TrEMBL
  ENSSSCG00035047412 UniProtKB/TrEMBL
  ENSSSCG00040054172 UniProtKB/TrEMBL
  ENSSSCG00045033361 UniProtKB/TrEMBL
  ENSSSCG00050025836 UniProtKB/TrEMBL
  ENSSSCG00055017265 UniProtKB/TrEMBL
  ENSSSCG00060058462 UniProtKB/TrEMBL
  ENSSSCG00065019823 UniProtKB/TrEMBL
  ENSSSCG00070016554 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000095433 ENTREZGENE
  ENSSSCT00000095433.1 UniProtKB/TrEMBL
  ENSSSCT00005044181.1 UniProtKB/TrEMBL
  ENSSSCT00015098327.1 UniProtKB/TrEMBL
  ENSSSCT00025016415.1 UniProtKB/TrEMBL
  ENSSSCT00030065122.1 UniProtKB/TrEMBL
  ENSSSCT00035063121.1 UniProtKB/TrEMBL
  ENSSSCT00040073284.1 UniProtKB/TrEMBL
  ENSSSCT00045057036.1 UniProtKB/TrEMBL
  ENSSSCT00050034794.1 UniProtKB/TrEMBL
  ENSSSCT00055033940.1 UniProtKB/TrEMBL
  ENSSSCT00060079730.1 UniProtKB/TrEMBL
  ENSSSCT00065026423.1 UniProtKB/TrEMBL
  ENSSSCT00070032663.1 UniProtKB/TrEMBL
  ENSSSCT00070032694.1 UniProtKB/TrEMBL
InterPro Ninjurin UniProtKB/TrEMBL
NCBI Gene NINJ1 ENTREZGENE
PANTHER PTHR12316 UniProtKB/TrEMBL
  PTHR12316:SF19 UniProtKB/TrEMBL
Pfam Ninjurin UniProtKB/TrEMBL
UniProt A0A4X1UBH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UE11_PIG UniProtKB/TrEMBL
  A0A8D0JNI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FM15 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90746 ENTREZGENE