LOC100736951 (15 kDa protein B-like) - Rat Genome Database

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Gene: LOC100736951 (15 kDa protein B-like) Sus scrofa
Analyze
Symbol: LOC100736951
Name: 15 kDa protein B-like
RGD ID: 14177866
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); lipopolysaccharide binding (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); defense response (inferred); defense response to Gram-negative bacterium (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11330,167,710 - 30,173,087 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21333,400,713 - 33,405,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC100736951
159 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 1 9
Below cutoff 1 2 1 1 7 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_003483171   ⟹   XP_003483219
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11330,167,710 - 30,173,087 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003483219   ⟸   XM_003483171
- UniProtKB: F1SNU4 (UniProtKB/TrEMBL),   A0A4X1T4B8 (UniProtKB/TrEMBL),   A0A8D0WBR2 (UniProtKB/TrEMBL),   A0A8D1QAT3 (UniProtKB/TrEMBL),   A0A8D1TIM7 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011334 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025042943 UniProtKB/TrEMBL
  ENSSSCG00030029929 UniProtKB/TrEMBL
  ENSSSCG00035057339 UniProtKB/TrEMBL
  ENSSSCG00040027877 UniProtKB/TrEMBL
  ENSSSCG00050051617 UniProtKB/TrEMBL
  ENSSSCG00055010944 UniProtKB/TrEMBL
  ENSSSCG00065041471 UniProtKB/TrEMBL
  ENSSSCG00070006280 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012411 ENTREZGENE
  ENSSSCT00000012411.5 UniProtKB/TrEMBL
  ENSSSCT00025058164.1 UniProtKB/TrEMBL
  ENSSSCT00030041567.1 UniProtKB/TrEMBL
  ENSSSCT00035076681.1 UniProtKB/TrEMBL
  ENSSSCT00040037337.1 UniProtKB/TrEMBL
  ENSSSCT00050070286.1 UniProtKB/TrEMBL
  ENSSSCT00055021500.1 UniProtKB/TrEMBL
  ENSSSCT00065056729.1 UniProtKB/TrEMBL
  ENSSSCT00070011982.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Cathelicidin UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
KEGG Report ssc:100736951 UniProtKB/TrEMBL
NCBI Gene LOC100736951 ENTREZGENE
PANTHER NEUTROPHILIC GRANULE PROTEIN UniProtKB/TrEMBL
  PTHR10206 UniProtKB/TrEMBL
Pfam Cathelicidins UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A4X1T4B8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WBR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QAT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TIM7 ENTREZGENE, UniProtKB/TrEMBL
  F1SNU4 ENTREZGENE, UniProtKB/TrEMBL