SELP (selectin P) - Rat Genome Database
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Gene: SELP (selectin P) Sus scrofa
Analyze
Symbol: SELP
Name: selectin P
RGD ID: 14285826
Description: ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); sialic acid binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); inflammatory response (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); Acute Necrotizing Pancreatitis (ortholog); allergic disease (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular space (ortholog); membrane (ortholog); INTERACTS WITH 3,3',4,4'-tetrachlorobiphenyl; phorbol 13-acetate 12-myristate; quercetin
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: P-selectin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl481,365,740 - 81,406,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1481,376,804 - 81,401,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2489,001,468 - 89,025,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10706724   PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SELP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl481,365,740 - 81,406,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1481,376,804 - 81,401,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2489,001,468 - 89,025,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1169,588,849 - 169,630,193 (-)EnsemblGRCh38hg38GRCh38
GRCh381169,588,849 - 169,630,125 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371169,558,087 - 169,599,362 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,824,711 - 167,866,001 (-)NCBINCBI36hg18NCBI36
Build 341166,289,747 - 166,331,065NCBI
Celera1142,667,866 - 142,709,161 (-)NCBI
Cytogenetic Map1q24.2NCBI
HuRef1140,780,771 - 140,822,069 (-)NCBIHuRef
CHM1_11170,980,248 - 171,021,531 (-)NCBICHM1_1
Selp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,942,833 - 163,977,595 (+)NCBIGRCm39mm39
GRCm39 Ensembl1163,942,833 - 163,977,595 (+)Ensembl
GRCm381164,115,264 - 164,150,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,115,264 - 164,150,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,045,509 - 166,079,876 (+)NCBIGRCm37mm9NCBIm37
MGSCv361165,952,053 - 165,986,420 (+)NCBImm8
MGSCv361165,306,067 - 165,340,774 (+)NCBImm8
Celera1166,568,384 - 166,587,846 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map171.42NCBI
Selp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21376,476,229 - 76,511,846 (+)NCBI
Rnor_6.0 Ensembl1382,429,063 - 82,464,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01382,428,914 - 82,464,629 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01387,308,435 - 87,344,164 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41379,886,614 - 79,922,180 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11379,910,278 - 79,936,368 (+)NCBI
Celera1376,209,805 - 76,244,685 (+)NCBICelera
RH 3.4 Map13482.6RGD
Cytogenetic Map13q23NCBI
Selp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554627,652,437 - 7,693,994 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554627,658,371 - 7,692,870 (+)NCBIChiLan1.0ChiLan1.0
SELP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11148,793,677 - 148,834,701 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,793,677 - 148,834,701 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01145,071,094 - 145,112,851 (-)NCBIMhudiblu_PPA_v0panPan3
SELP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl728,958,486 - 28,996,313 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1728,956,428 - 28,997,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Selp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648117,076,660 - 17,112,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103230618
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12559,420,910 - 59,465,140 (+)NCBI
ChlSab1.1 Ensembl2559,433,333 - 59,462,598 (+)Ensembl
Selp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248267,510,039 - 7,544,332 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 3 5 2 17 3 1
Below cutoff 1 2 6 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006891   ⟹   ENSSSCP00000006703
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl481,376,696 - 81,406,203 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000035164   ⟹   ENSSSCP00000053410
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl481,372,749 - 81,406,203 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083382   ⟹   ENSSSCP00000063760
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl481,365,740 - 81,406,203 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000085188   ⟹   ENSSSCP00000073053
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl481,376,672 - 81,406,203 (+)Ensembl
RefSeq Acc Id: NM_214078   ⟹   NP_999243
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1481,376,804 - 81,401,240 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999243 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA79007 (Get FASTA)   NCBI Sequence Viewer  
  AAF43272 (Get FASTA)   NCBI Sequence Viewer  
  AAZ06666 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_999243   ⟸   NM_214078
- Peptide Label: precursor
- UniProtKB: Q29097 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000063760   ⟸   ENSSSCT00000083382
RefSeq Acc Id: ENSSSCP00000006703   ⟸   ENSSSCT00000006891
RefSeq Acc Id: ENSSSCP00000073053   ⟸   ENSSSCT00000085188
RefSeq Acc Id: ENSSSCP00000053410   ⟸   ENSSSCT00000035164
Protein Domains
C-type lectin   EGF-like   Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006288 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070020349 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000006703 UniProtKB/TrEMBL
  ENSSSCP00000053410 UniProtKB/TrEMBL
  ENSSSCP00000063760 UniProtKB/TrEMBL
  ENSSSCP00000073053 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070033854 UniProtKB/TrEMBL
  ENSSSCP00070033876 UniProtKB/TrEMBL
  ENSSSCP00070033881 UniProtKB/TrEMBL
  ENSSSCP00070033888 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006891 UniProtKB/TrEMBL
  ENSSSCT00000035164 UniProtKB/TrEMBL
  ENSSSCT00000083382 UniProtKB/TrEMBL
  ENSSSCT00000085188 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070040368 UniProtKB/TrEMBL
  ENSSSCT00070040394 UniProtKB/TrEMBL
  ENSSSCT00070040400 UniProtKB/TrEMBL
  ENSSSCT00070040408 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Selectin_CTLD UniProtKB/TrEMBL
  Selectin_superfamily UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
KEGG Report ssc:397150 UniProtKB/TrEMBL
NCBI Gene SELP ENTREZGENE
Pfam Lectin_C UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PRINTS SELECTIN UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A287BBC0_PIG UniProtKB/TrEMBL
  A0A4X1UWR9_PIG UniProtKB/TrEMBL
  A0A4X1UYD8_PIG UniProtKB/TrEMBL
  A0A4X1UZQ4_PIG UniProtKB/TrEMBL
  A0A5G2QZT2_PIG UniProtKB/TrEMBL
  A0A5G2RLA8_PIG UniProtKB/TrEMBL
  F1RPW3_PIG UniProtKB/TrEMBL
  Q29097 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92692 ENTREZGENE