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ONTOLOGY REPORT - ANNOTATIONS

Term:deadenylation-dependent decapping of nuclear-transcribed mRNA
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Accession:GO:0000290 term browser browse the term
Definition:Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length.
Synonyms:exact_synonym: deadenylation-dependent decapping of nuclear mRNA;   deadenylylation-dependent decapping


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deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in
acts_upstream_of_or_within		 ISO (PMID:31439799)
MGI:109382 (PMID:18625844)		 RGD PMID:18625844 PMID:31439799 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576 		JBrowse link
G Dcp1a decapping mRNA 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:5,656,960...5,702,151
Ensembl chr16:5,656,773...5,702,140 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:152,358,267...152,395,747
Ensembl chr 4:152,358,241...152,397,145 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000104
GO_REF:0000033		 InterPro
UniProt
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO MGI:1298230 (PMID:18625844) RGD PMID:18625844 NCBI chr 2:135,271,189...135,291,407
Ensembl chr 2:135,271,189...135,291,400 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (PMID:18625844) RGD PMID:18625844 NCBI chr12:7,476,707...7,595,384
Ensembl chr12:7,476,697...7,599,204 		JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO
ISS
IEA
IBA		 (PMID:20584987), (PMID:20852261)
GO_REF:0000024
GO_REF:0000002
GO_REF:0000033		 RGD
UniProt
InterPro
GO_Central		 PMID:20584987 PMID:20852261 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857 		JBrowse link
G Patl2 PAT1 homolog 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:109,072,958...109,087,425
Ensembl chr 3:109,075,290...109,083,253 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:33,415,666...33,465,319
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) RGD PMID:32354837 NCBI chr14:78,056,115...78,099,846
Ensembl chr14:78,056,297...78,098,793 		JBrowse link
regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Caprin1 cell cycle associated protein 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:31439799)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:31439799 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:90,152,305...90,230,447
Ensembl chr 3:90,153,620...90,230,502 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20535
    biological regulation 13817
      regulation of biological quality 3444
        regulation of RNA stability 267
          regulation of mRNA stability 251
            mRNA destabilization 176
              nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 51
                deadenylation-dependent decapping of nuclear-transcribed mRNA 13
                  negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA 1
                  regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA + 2
Path 2
Term Annotations click to browse term
  biological_process 20535
    biological regulation 13817
      regulation of biological process 13372
        regulation of cellular process 13010
          regulation of metabolic process 6831
            regulation of biosynthetic process 5627
              regulation of macromolecule biosynthetic process 5422
                regulation of gene expression 5305
                  negative regulation of gene expression 1387
                    mRNA catabolic process 340
                      regulation of mRNA catabolic process 266
                        regulation of mRNA stability 251
                          mRNA destabilization 176
                            nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 51
                              deadenylation-dependent decapping of nuclear-transcribed mRNA 13
                                negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA 1
                                regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA + 2
paths to the root