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benzyl bromides - Ontology Report - Rat Genome Database

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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:benzyl bromides
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Accession:CHEBI:59857 term browser browse the term
Definition:Compounds containing a (bromomethyl)benzene skeleton.
Synonyms:related_synonym: benzylic bromide;   benzylic bromides

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4-nitrobenzyl bromide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c2 aldo-keto reductase family 1, member C2 increases activity
increases expression 		ISO 4-nitrobenzyl bromide results in increased activity of AKR1C2 promoter
4-nitrobenzyl bromide results in increased expression of AKR1C2 mRNA 		CTD PMID:21195160 PMID:25724174 NCBI chr17:65,759,778...65,808,013
Ensembl chr17:65,759,788...65,775,764 		JBrowse link
G Atf3 activating transcription factor 3 increases expression ISO 4-nitrobenzyl bromide results in increased expression of ATF3 mRNA CTD PMID:23999411 NCBI chr13:102,751,278...102,800,520
Ensembl chr13:102,751,321...102,764,631 		JBrowse link
G Dnajb4 DnaJ heat shock protein family (Hsp40) member B4 increases expression ISO 4-nitrobenzyl bromide results in increased expression of DNAJB4 mRNA CTD PMID:23999411 NCBI chr 2:241,129,346...241,159,272
Ensembl chr 2:241,130,340...241,159,089 		JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit increases expression ISO 4-nitrobenzyl bromide results in increased expression of GCLM mRNA CTD PMID:23999411 NCBI chr 2:210,347,482...210,367,537
Ensembl chr 2:210,347,482...210,367,535 		JBrowse link
G Hmox1 heme oxygenase 1 increases expression ISO 4-nitrobenzyl bromide results in increased expression of HMOX1 mRNA CTD PMID:23445166 PMID:25724174 PMID:26244607 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Hspa6l-ps1 heat shock protein family A (Hsp70) member 6 like, pseudogene 1 increases expression ISO 4-nitrobenzyl bromide results in increased expression of HSPA6 mRNA CTD PMID:23999411 NCBI chr13:83,273,176...83,274,317 JBrowse link
G Il18 interleukin 18 increases expression ISO 4-nitrobenzyl bromide results in increased expression of IL18 protein CTD PMID:23063874 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887 		JBrowse link
G Il1a interleukin 1 alpha increases expression ISO 4-nitrobenzyl bromide results in increased expression of IL1A mRNA CTD PMID:33715048 NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822 		JBrowse link
G Il1b interleukin 1 beta increases secretion
increases expression 		ISO 4-nitrobenzyl bromide results in increased secretion of IL1B protein
4-nitrobenzyl bromide results in increased expression of IL1B mRNA 		CTD PMID:33715048 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 increases expression ISO 4-nitrobenzyl bromide results in increased expression of NQO1 mRNA CTD PMID:25724174 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557 		JBrowse link
benzyl bromide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcr4 C-X-C motif chemokine receptor 4 increases expression ISO benzyl bromide results in increased expression of CXCR4 mRNA CTD PMID:20713136 NCBI chr13:40,077,976...40,081,883
Ensembl chr13:40,077,976...40,081,883 		JBrowse link
G Hmox1 heme oxygenase 1 increases expression ISO benzyl bromide results in increased expression of HMOX1 mRNA CTD PMID:20713136 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Il1b interleukin 1 beta increases expression ISO benzyl bromide results in increased expression of IL1B mRNA CTD PMID:20713136 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Il1r2 interleukin 1 receptor type 2 increases expression ISO benzyl bromide results in increased expression of IL1R2 mRNA CTD PMID:20713136 NCBI chr 9:42,384,280...42,424,726
Ensembl chr 9:42,384,433...42,424,725 		JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 increases expression ISO benzyl bromide results in increased expression of PMAIP1 mRNA CTD PMID:20713136 NCBI chr18:59,986,020...59,992,434
Ensembl chr18:59,986,017...59,992,429 		JBrowse link
G Tnfaip6 TNF alpha induced protein 6 increases expression ISO benzyl bromide results in increased expression of TNFAIP6 mRNA CTD PMID:20713136 NCBI chr 3:36,502,250...36,521,652
Ensembl chr 3:36,502,188...36,521,649 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20845
    chemical entity 20843
      group 20786
        polyatomic entity 20786
          heteroatomic molecular entity 20723
            halide 19156
              organohalogen compound 18973
                benzyl halide 15
                  benzyl bromides 14
                    4-nitrobenzyl bromide 10
                    benzyl bromide 6
                    pentafluorobenzyl bromide 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 20845
    subatomic particle 20843
      composite particle 20843
        hadron 20843
          baryon 20843
            nucleon 20843
              atomic nucleus 20843
                atom 20843
                  main group element atom 20766
                    p-block element atom 20766
                      carbon group element atom 20699
                        carbon atom 20693
                          organic molecular entity 20693
                            heteroorganic entity 20202
                              organohalogen compound 18973
                                organobromine compound 7635
                                  benzyl bromides 14
                                    4-nitrobenzyl bromide 10
                                    benzyl bromide 6
                                    pentafluorobenzyl bromide 0
paths to the root