ONTOLOGY REPORT - ANNOTATIONS
Term: diencephalon development
Accession: GO:0021536
browse the term
Definition: The process whose specific outcome is the progression of the diencephalon over time, from its formation to the mature structure. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex.
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Sema5a
semaphorin 5A
involved_in
IMP
PMID:15603739
UniProt
PMID:15603739
RGD:8553809
NCBI chr 2:83,309,843...83,741,084
Ensembl chr 2:83,309,843...83,741,084
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Six3
SIX homeobox 3
acts_upstream_of_or_within
ISO
MGI:98953 (PMID:18094027)
RGD
PMID:18094027
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
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Wnt1
Wnt family member 1
acts_upstream_of_or_within
ISO
MGI:102764 (PMID:18094027)
RGD
PMID:18094027
NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
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Drd2
dopamine receptor D2
acts_upstream_of_or_within
ISO
MGI:3576789 (PMID:9140068)
RGD
PMID:9140068
NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
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Ghrh
growth hormone releasing hormone
acts_upstream_of_or_within
TAS ISO
MGI:3051561 (PMID:15985453)
RGD
PMID:15985453 PMID:12511850
RGD:1601329
NCBI chr 3:145,992,762...146,012,528
Ensembl chr 3:145,992,763...146,011,889
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Ghrhr
growth hormone releasing hormone receptor
acts_upstream_of_or_within
ISO
MGI:1856425 (PMID:1270792), (PMID:1329576), (PMID:1504465)
RGD
PMID:1270792 PMID:1329576 PMID:1504465
NCBI chr 4:84,498,159...84,532,851
Ensembl chr 4:84,500,212...84,532,776
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Gsx1
GS homeobox 1
acts_upstream_of_or_within
ISO
MGI:2154448 (PMID:8631293)
RGD
PMID:8631293
NCBI chr12:7,880,663...7,882,947
Ensembl chr12:7,881,460...7,882,753
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Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3808031 (PMID:18996108)
Ensembl RGD
PMID:18996108
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
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Pou1f1
POU class 1 homeobox 1
IMP
RGD
PMID:16216912
RGD:1601440
NCBI chr11:3,316,818...3,334,804
Ensembl chr11:3,317,058...3,334,801
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Prop1
PROP paired-like homeobox 1
acts_upstream_of_or_within
ISO
(PMID:18996108)
RGD
PMID:18996108
NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434
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Slc6a3
solute carrier family 6 member 3
acts_upstream_of_or_within
ISO
MGI:2386303 (PMID:9247269)
RGD
PMID:9247269
NCBI chr 1:29,709,443...29,750,413
Ensembl chr 1:29,709,443...29,750,413
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Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
IEP ISO
MGI:2449045 (PMID:16932809)
RGD
PMID:16932809 PMID:21815952
RGD:8661681
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
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Duox2
dual oxidase 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3712359 (PMID:17440044)
Ensembl RGD
PMID:17440044
GO_REF:0000107
NCBI chr 3:109,223,809...109,247,023
Ensembl chr 3:109,226,924...109,245,902
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Foxb1
forkhead box B1
involved_in
ISO
(MGI:4887555|PMID:19046377)
RGD
PMID:19046377
MGI:4887555
NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781
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Bmp2
bone morphogenetic protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:9463347)
Ensembl RGD
PMID:9463347
GO_REF:0000107
NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
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Fgf2
fibroblast growth factor 2
acts_upstream_of_or_within
ISO
(PMID:9463347)
RGD
PMID:9463347
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
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Fgf8
fibroblast growth factor 8
acts_upstream_of_or_within
ISO
(PMID:9463347)
RGD
PMID:9463347
NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359
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Otx1
orthodenticle homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:97451 (PMID:20816794)
Ensembl RGD
PMID:20816794
GO_REF:0000107
NCBI chr14:96,082,146...96,089,161
Ensembl chr14:96,082,151...96,089,086
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Otx2
orthodenticle homeobox 2
acts_upstream_of_or_within
ISO
MGI:97450 (PMID:20816794)
RGD
PMID:20816794
NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
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Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
MGI:2181440|MGI:3052123 (PMID:15240551)
RGD
PMID:15240551
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
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Arx
aristaless related homeobox
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2679972 (PMID:17460091)
Ensembl RGD
PMID:17460091
GO_REF:0000107
NCBI chr X:58,016,233...58,028,149
Ensembl chr X:58,016,233...58,028,142
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Kcnc1
potassium voltage-gated channel subfamily C member 1
IEP
RGD
PMID:10482766
RGD:9685780
NCBI chr 1:96,902,953...96,944,744
Ensembl chr 1:96,902,953...96,944,744
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Kcnc2
potassium voltage-gated channel subfamily C member 2
IEP
RGD
PMID:10482766
RGD:9685780
NCBI chr 7:47,700,035...47,883,979
Ensembl chr 7:47,700,288...47,883,968
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Nkx2-1
NK2 homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3653645 (PMID:20181579) (PMID:11854319)
Ensembl RGD
PMID:11854319 PMID:20181579
GO_REF:0000107
NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
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Ndnf
neuron-derived neurotrophic factor
involved_in
ISO
(MGI:6442643|PMID:31883645)
RGD
PMID:31883645
MGI:6442643
NCBI chr 4:94,944,392...94,981,871
Ensembl chr 4:94,944,360...94,981,873
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Nrp1
neuropilin 1
involved_in
ISO
(MGI:4850173|PMID:21059704)
RGD
PMID:21059704
MGI:4850173
NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
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Nrp2
neuropilin 2
involved_in
ISO IEA
(MGI:4850173|PMID:21059704) GO_REF:0000107
RGD Ensembl
PMID:21059704
GO_REF:0000107 MGI:4850173
NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
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Plxna1
plexin A1
involved_in
ISO
UniProtKB:P70208 (MGI:6389759|PMID:31690636)
RGD
PMID:31690636
MGI:6389759
NCBI chr 4:121,737,934...121,782,901
Ensembl chr 4:121,737,945...122,024,196
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Plxna3
plexin A3
involved_in
ISO
UniProtKB:P70206 (MGI:6389759|PMID:31690636)
RGD
PMID:31690636
MGI:6389759
NCBI chr X:152,115,699...152,131,608
Ensembl chr X:152,115,819...152,131,603
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Sema3a
semaphorin 3A
involved_in
ISO
(MGI:4850173|PMID:21059704)
RGD
PMID:21059704
MGI:4850173
NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
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Sema3e
semaphorin 3E
involved_in
ISO
(PMID:25985275)
RGD
PMID:25985275
NCBI chr 4:20,297,534...20,555,287
Ensembl chr 4:20,299,718...20,555,229
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Nr4a2
nuclear receptor subfamily 4, group A, member 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:19906978)
Ensembl RGD
PMID:19906978
GO_REF:0000107
NCBI chr 3:41,689,847...41,707,036
Ensembl chr 3:41,689,851...41,697,877
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Pax6
paired box 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856155 (PMID:24528677)
Ensembl RGD
PMID:24528677
GO_REF:0000107
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
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Pou4f1
POU class 4 homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2387665|MGI:3512089 (PMID:19906978)
Ensembl RGD
PMID:19906978
GO_REF:0000107
NCBI chr15:81,253,714...81,260,057
Ensembl chr15:81,257,781...81,259,728
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Prop1
PROP paired-like homeobox 1
acts_upstream_of_or_within
ISO
MGI:3690463 (PMID:16678101)
RGD
PMID:16678101
NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434
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Wnt5a
Wnt family member 5A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857617 (PMID:15037319)
Ensembl RGD
PMID:15037319
GO_REF:0000107
NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
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Hap1
huntingtin-associated protein 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:5560429|PMID:24355921)
Ensembl RGD
PMID:24355921
GO_REF:0000107 MGI:5560429
NCBI chr10:85,277,890...85,286,126
Ensembl chr10:85,277,890...85,286,126
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Otp
orthopedia homeobox
acts_upstream_of_or_within
ISO
MGI:2180541 (PMID:10557207)
RGD
PMID:10557207
NCBI chr 2:26,108,158...26,116,359
Ensembl chr 2:26,108,163...26,116,359
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Pou3f2
POU class 3 homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857996 (PMID:8543156)
Ensembl RGD
PMID:8543156
GO_REF:0000107
NCBI chr 5:36,077,930...36,083,838
Ensembl chr 5:36,077,930...36,083,838
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Prdm13
PR/SET domain 13
involved_in
ISO
(MGI:6836711|PMID:34730112)
RGD
PMID:34730112
MGI:6836711
NCBI chr 5:35,220,815...35,232,866
Ensembl chr 5:35,225,435...35,232,881
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Prop1
PROP paired-like homeobox 1
acts_upstream_of_or_within
ISO
MGI:1856842 (PMID:9067988)
RGD
PMID:9067988
NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434
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Foxb1
forkhead box B1
involved_in
ISO
(MGI:4887555|PMID:19046377)
RGD
PMID:19046377
MGI:4887555
NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781
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Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:1857846 (PMID:18206388)
RGD
PMID:18206388
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
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Bax
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
ISO
MGI:1857429 (PMID:15342910)
RGD
PMID:15342910
NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
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Bloc1s6
biogenesis of lysosomal organelles complex 1 subunit 6
acts_upstream_of_or_within
ISO
MGI:1856982 (PMID:30498428)
RGD
PMID:30498428
NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
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Crh
corticotropin releasing hormone
IEP
RGD
PMID:20002962
RGD:5130950
NCBI chr 2:102,143,055...102,144,919
Ensembl chr 2:102,143,055...102,144,919
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Crhr1
corticotropin releasing hormone receptor 1
IEP
RGD
PMID:20002962
RGD:5130950
NCBI chr10:89,040,186...89,083,481
Ensembl chr10:89,040,203...89,083,481
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Crhr2
corticotropin releasing hormone receptor 2
IEP
RGD
PMID:20002962
RGD:5130950
NCBI chr 4:84,222,897...84,265,924
Ensembl chr 4:84,224,002...84,265,904
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Ctnnb1
catenin beta 1
involved_in
IEA ISO
GO_REF:0000107 MGI:1858008 (PMID:32868762)
Ensembl RGD
PMID:32868762
GO_REF:0000107
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Cyp19a1
cytochrome P450, family 19, subfamily a, polypeptide 1
IEP
RGD
PMID:15804399
RGD:4891928
NCBI chr 8:54,552,978...54,580,375
Ensembl chr 8:54,553,165...54,580,758
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Esr2
estrogen receptor 2
IEP
RGD
PMID:12960049
RGD:1582276
NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919
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Ets1
ETS proto-oncogene 1, transcription factor
IEP
RGD
PMID:8946059
RGD:2313681
NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010
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Gsx1
GS homeobox 1
acts_upstream_of_or_within
ISO
MGI:2154448 (PMID:8631293)
RGD
PMID:8631293
NCBI chr12:7,880,663...7,882,947
Ensembl chr12:7,881,460...7,882,753
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Myc
MYC proto-oncogene, bHLH transcription factor
IEP
RGD
PMID:23291449
RGD:7207858
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Ncoa1
nuclear receptor coactivator 1
IEP
RGD
PMID:12551846
RGD:5688241
NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
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Nkx2-1
NK2 homeobox 1
involved_in
IEA ISO
GO_REF:0000107 MGI:5302534 (PMID:32868762)
Ensembl RGD
PMID:32868762
GO_REF:0000107
NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
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Nkx2-6
NK2 homeobox 6
involved_in
ISO
(MGI:1267297|PMID:9621431)
RGD
PMID:9621431
MGI:1267297
NCBI chr15:44,443,151...44,447,248
Ensembl chr15:44,443,101...44,447,247
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Rab3gap1
RAB3 GTPase activating protein catalytic subunit 1
involved_in
ISO IEA
(PMID:20512159) GO_REF:0000107
RGD Ensembl
PMID:20512159
GO_REF:0000107
NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
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Rax
retina and anterior neural fold homeobox
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856862 (PMID:925203)
Ensembl RGD
PMID:925203
GO_REF:0000107
NCBI chr18:59,463,347...59,467,469
Ensembl chr18:59,463,737...59,467,431
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Reln
reelin
IEP
RGD
PMID:10436054
RGD:634730
NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211
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Sox3
SRY-box transcription factor 3
involved_in
ISO
(MGI:3033563|PMID:14981518)
RGD
PMID:14981518
MGI:3033563
NCBI chr X:139,308,608...139,310,687
Ensembl chr X:139,309,329...139,310,678
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Srd5a1
steroid 5 alpha-reductase 1
IEP
RGD
PMID:15804399 PMID:8770891
RGD:4891928 , RGD:4892048
NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461
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Srd5a2
steroid 5 alpha-reductase 2
IEP
RGD
PMID:15804399
RGD:4891928
NCBI chr 6:21,426,225...21,465,727
Ensembl chr 6:21,426,215...21,462,112
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Uqcrq
ubiquinol-cytochrome c reductase, complex III subunit VII
involved_in
ISO
(MGI:3662936|PMID:16901643)
RGD
PMID:16901643
MGI:3662936
NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169
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Nhlh2
nescient helix loop helix 2
acts_upstream_of_or_within_positive_effect
ISO
(MGI:5504302|PMID:23785158)
RGD
PMID:23785158
MGI:5504302
NCBI chr 2:189,444,287...189,449,625
Ensembl chr 2:189,442,711...189,449,625
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Ubb
ubiquitin B
acts_upstream_of_or_within
ISO
MGI:3774112 (PMID:18299572)
RGD
PMID:18299572
NCBI chr10:47,247,630...47,249,335
Ensembl chr10:47,245,637...47,249,333
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Chrnb2
cholinergic receptor nicotinic beta 2 subunit
acts_upstream_of_or_within
ISO
MGI:2158714 (PMID:12097474)
RGD
PMID:12097474
NCBI chr 2:175,181,402...175,189,619
Ensembl chr 2:175,181,402...175,189,619
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Zeb2
zinc finger E-box binding homeobox 2
acts_upstream_of_or_within
ISO
MGI:2387499|MGI:2668659 (PMID:25741725)
RGD
PMID:25741725
NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157
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Foxb1
forkhead box B1
involved_in
ISO
(MGI:1931655|PMID:11170346), (MGI:3589689|PMID:15654859)
RGD
PMID:11170346 PMID:15654859
MGI:1931655 MGI:3589689
NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781
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Foxb1
forkhead box B1
involved_in
ISO
(MGI:1352733|PMID:10662642), (MGI:1931655|PMID:11170346)
RGD
PMID:10662642 PMID:11170346
MGI:1352733 MGI:1931655
NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781
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Otp
orthopedia homeobox
acts_upstream_of_or_within
ISO
MGI:2180541 (PMID:10557207)
RGD
PMID:10557207
NCBI chr 2:26,108,158...26,116,359
Ensembl chr 2:26,108,163...26,116,359
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Pou3f2
POU class 3 homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857996 (PMID:8543156)
Ensembl RGD
PMID:8543156
GO_REF:0000107
NCBI chr 5:36,077,930...36,083,838
Ensembl chr 5:36,077,930...36,083,838
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Adcyap1
adenylate cyclase activating polypeptide 1
IEP
RGD
PMID:18160680
RGD:2325274
NCBI chr 9:113,102,632...113,122,500
Ensembl chr 9:113,103,718...113,109,773
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
IEP
RGD
PMID:17180597
RGD:2306413
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Aldh1a3
aldehyde dehydrogenase 1 family, member A3
IEP
RGD
PMID:17180597
RGD:2306413
NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
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Bmp4
bone morphogenetic protein 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857137 (PMID:9806931)
Ensembl RGD
PMID:9806931
GO_REF:0000107
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:2158342|MGI:2158390 (PMID:17359964)
RGD
PMID:17359964
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
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Cdh1
cadherin 1
IEP
RGD
PMID:17373711
RGD:2289637
NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
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Creb1
cAMP responsive element binding protein 1
acts_upstream_of_or_within
ISO
MGI:2176173|MGI:2181395 (PMID:16141355)
RGD
PMID:16141355
NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
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Ets1
ETS proto-oncogene 1, transcription factor
IEP
RGD
PMID:8946059
RGD:2313681
NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010
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Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1859647 (PMID:11062007)
RGD
PMID:11062007
NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
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Gata2
GATA binding protein 2
acts_upstream_of_or_within
ISO
MGI:2179995|MGI:3628639 (PMID:16543408)
RGD
PMID:16543408
NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
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Gli1
GLI family zinc finger 1
acts_upstream_of_or_within
ISO
MGI:95728 (PMID:10725236)
RGD
PMID:10725236
NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
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Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:95727 (PMID:10725236)
RGD
PMID:10725236
NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
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Hes1
hes family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:104876|MGI:2149672 (PMID:17015435), (PMID:17426285)
RGD
PMID:17015435 PMID:17426285
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
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Hesx1
HESX homeobox 1
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:26781211) MGI:102764|MGI:1931124|MGI:3822474|MGI:3822475 (PMID:11731482), (PMID:18775421), (PMID:19093031), (PMID:20181723), (PMID:9620767) GO_REF:0000033
RGD GO_Central
PMID:9620767 PMID:11731482 PMID:18775421 PMID:19093031 PMID:20181723 PMID:26781211 More...
GO_REF:0000033
NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957
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Hmga2
high mobility group AT-hook 2
acts_upstream_of_or_within
ISO
MGI:1856426 (PMID:504232)
RGD
PMID:504232
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
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Inhbb
inhibin subunit beta B
IEP
RGD
PMID:18160680
RGD:2325274
NCBI chr13:30,530,860...30,536,566
Ensembl chr13:30,530,860...30,537,832
G
Isl1
ISL LIM homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2182246 (PMID:9806931)
Ensembl RGD
PMID:9806931
GO_REF:0000107
NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
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Kdm1a
lysine demethylase 1A
acts_upstream_of_or_within
ISO
MGI:3711561 (PMID:17392792)
RGD
PMID:17392792
NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
G
Lhx3
LIM homeobox 3
acts_upstream_of_or_within
ISO
MGI:2385819 (PMID:18037398)
RGD
PMID:18037398
NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
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Msx1
msh homeobox 1
IEP
RGD
PMID:16451220
RGD:5132608
NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966
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Nkx2-1
NK2 homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857494 (PMID:9806931)
Ensembl RGD
PMID:9806931
GO_REF:0000107
NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
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Nog
noggin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1862000 (PMID:17359964)
Ensembl RGD
PMID:17359964
GO_REF:0000107
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Pax6
paired box 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856155|MGI:1934347 (PMID:10588713)
Ensembl RGD
PMID:10588713
GO_REF:0000107
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
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Pcsk1
proprotein convertase subtilisin/kexin type 1
IEP
RGD
PMID:15208361
RGD:2308902
NCBI chr 2:4,395,543...4,442,434
Ensembl chr 2:4,395,543...4,442,434
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Pitx1
paired-like homeodomain 1
acts_upstream_of_or_within
ISO
MGI:1934200 (PMID:10049363)
RGD
PMID:10049363
NCBI chr17:8,794,134...8,800,292
Ensembl chr17:8,794,134...8,800,291
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Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:1857844|MGI:1857846|MGI:2384494 (PMID:10498698), (PMID:10499586)
RGD
PMID:10498698 PMID:10499586
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
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Pou1f1
POU class 1 homeobox 1
acts_upstream_of_or_within
ISO
MGI:1856024 (PMID:16556738)
RGD
PMID:16556738
NCBI chr11:3,316,818...3,334,804
Ensembl chr11:3,317,058...3,334,801
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Prop1
PROP paired-like homeobox 1
acts_upstream_of_or_within
ISO
MGI:1856842 (PMID:11731482)
RGD
PMID:11731482
NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434
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Rbpj
recombination signal binding protein for immunoglobulin kappa J region
acts_upstream_of_or_within
ISO
MGI:3583755 (PMID:17015435)
RGD
PMID:17015435
NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
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Sall1
spalt-like transcription factor 1
involved_in
ISO
(PMID:12065233)
RGD
PMID:12065233
NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705
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Six3
SIX homeobox 3
involved_in acts_upstream_of_or_within
ISO
(MGI:3821506|PMID:18775421) MGI:96071 (PMID:18775421)
RGD
PMID:18775421
MGI:3821506
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
G
Sox2
SRY-box transcription factor 2
involved_in
ISO
(PMID:18285410)
RGD
PMID:18285410
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
G
Sox3
SRY-box transcription factor 3
involved_in
ISO
(MGI:3033563|PMID:14981518)
RGD
PMID:14981518
MGI:3033563
NCBI chr X:139,308,608...139,310,687
Ensembl chr X:139,309,329...139,310,678
G
Srd5a1
steroid 5 alpha-reductase 1
IEP
RGD
PMID:8770891
RGD:4892048
NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461
G
Tbx19
T-box transcription factor 19
acts_upstream_of_or_within
ISO
(PMID:11447259)
RGD
PMID:11447259
NCBI chr13:77,450,848...77,484,475
Ensembl chr13:77,450,849...77,504,163
G
Tcf7l2
transcription factor 7 like 2
acts_upstream_of_or_within
ISO
MGI:1926344 (PMID:17919533)
RGD
PMID:17919533
NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
G
Lhx3
LIM homeobox 3
acts_upstream_of_or_within
ISO
MGI:2385819 (PMID:8638120)
RGD
PMID:8638120
NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
G
Ghrhr
growth hormone releasing hormone receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856425 (PMID:6116352), (PMID:6194978)
Ensembl RGD
PMID:6116352 PMID:6194978
GO_REF:0000107
NCBI chr 4:84,498,159...84,532,851
Ensembl chr 4:84,500,212...84,532,776
G
Pou1f1
POU class 1 homeobox 1
acts_upstream_of_or_within
ISO
MGI:2158737 (PMID:17015435)
RGD
PMID:17015435
NCBI chr11:3,316,818...3,334,804
Ensembl chr11:3,317,058...3,334,801
G
Lhx3
LIM homeobox 3
acts_upstream_of_or_within
ISO
MGI:2385819 (PMID:8638120)
RGD
PMID:8638120
NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
G
Pou1f1
POU class 1 homeobox 1
acts_upstream_of_or_within
ISO
MGI:1856024 (PMID:1334535), (PMID:6194978)
RGD
PMID:1334535 PMID:6194978
NCBI chr11:3,316,818...3,334,804
Ensembl chr11:3,317,058...3,334,801
G
Prop1
PROP paired-like homeobox 1
acts_upstream_of_or_within
ISO
MGI:1856842 (PMID:6194978)
RGD
PMID:6194978
NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434
G
Wnt4
Wnt family member 4
acts_upstream_of_or_within
ISO
MGI:1857453 (PMID:18351662)
RGD
PMID:18351662
NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
G
Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:1857846 (PMID:18206388)
RGD
PMID:18206388
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
G
Uqcrq
ubiquinol-cytochrome c reductase, complex III subunit VII
involved_in
ISO
(MGI:3662936|PMID:16901643)
RGD
PMID:16901643
MGI:3662936
NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169
G
Atp1a3
ATPase Na+/K+ transporting subunit alpha 3
acts_upstream_of_or_within
ISO
MGI:4356167 (PMID:23527305)
RGD
PMID:23527305
NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
G
Cntnap2
contactin associated protein 2
involved_in
ISO
(PMID:18179893)
RGD
PMID:18179893
NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
G
Foxb1
forkhead box B1
involved_in
ISO
(MGI:1931655|PMID:11170346)
RGD
PMID:11170346
MGI:1931655
NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781
G
Gbx2
gastrulation brain homeobox 2
acts_upstream_of_or_within
ISO
MGI:1857634|MGI:3840448 (PMID:19279136)
RGD
PMID:19279136
NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
G
Kif5a
kinesin family member 5A
IEP
RGD
PMID:9349526
RGD:12792964
NCBI chr 7:63,051,894...63,089,024
Ensembl chr 7:63,049,424...63,092,858
G
Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:2156191 (PMID:15342729)
RGD
PMID:15342729
NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
G
Mecp2
methyl CpG binding protein 2
IEP
RGD
PMID:12605461
RGD:12790706
NCBI chr X:151,781,177...151,844,687
Ensembl chr X:151,789,930...151,844,689
G
Ncam1
neural cell adhesion molecule 1
IDA
RGD
PMID:17292800
RGD:2326015
NCBI chr 8:49,865,629...50,165,687
Ensembl chr 8:49,865,633...50,166,014
G
Ncor1
nuclear receptor co-repressor 1
acts_upstream_of_or_within
ISO
MGI:2677822 (PMID:11030619)
RGD
PMID:11030619
NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032
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Ogdh
oxoglutarate dehydrogenase
involved_in
ISO IEA
(MGI:3662936|PMID:16901643) GO_REF:0000107
RGD Ensembl
PMID:16901643
GO_REF:0000107 MGI:3662936
NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479
G
Olig2
oligodendrocyte transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:19357274)
RGD
PMID:19357274
NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152
G
Ptchd1
patched domain containing 1
involved_in
ISO
(MGI:5779981|PMID:27007844)
RGD
PMID:27007844
MGI:5779981
NCBI chr X:39,681,910...39,733,416
Ensembl chr X:39,681,910...39,733,519
G
Ptn
pleiotrophin
IEP
RGD
PMID:10051750
RGD:10043838
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:108075|MGI:1934268|MGI:2176173 (PMID:19357274)
Ensembl RGD
PMID:19357274
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Smo
smoothened, frizzled class receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2176173|MGI:3576373 (PMID:19357274)
Ensembl RGD
PMID:19357274
GO_REF:0000107
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
G
Srd5a1
steroid 5 alpha-reductase 1
IEP
RGD
PMID:8770891
RGD:4892048
NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461
G
Tal2
TAL bHLH transcription factor 2
acts_upstream_of_or_within
ISO
MGI:2684532 (PMID:11071772)
RGD
PMID:11071772
NCBI chr 5:68,411,012...68,417,569
Ensembl chr 5:68,411,012...68,417,569
G
Uqcrq
ubiquinol-cytochrome c reductase, complex III subunit VII
involved_in
ISO
(MGI:3662936|PMID:16901643)
RGD
PMID:16901643
MGI:3662936
NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169
G
Bmp2
bone morphogenetic protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:9463347)
Ensembl RGD
PMID:9463347
GO_REF:0000107
NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
G
Fgf2
fibroblast growth factor 2
acts_upstream_of_or_within
ISO
(PMID:9463347)
RGD
PMID:9463347
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Fgf8
fibroblast growth factor 8
acts_upstream_of_or_within
ISO
(PMID:9463347)
RGD
PMID:9463347
NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359
G
Gata2
GATA binding protein 2
acts_upstream_of_or_within
ISO
MGI:2179995|MGI:3628639 (PMID:16543408)
RGD
PMID:16543408
NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
G
Lhx3
LIM homeobox 3
acts_upstream_of_or_within
ISO
MGI:2385819 (PMID:8638120)
RGD
PMID:8638120
NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
G
Wnt4
Wnt family member 4
acts_upstream_of_or_within
ISO
MGI:1857453 (PMID:18351662)
RGD
PMID:18351662
NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
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