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ONTOLOGY REPORT - ANNOTATIONS

Term:proteasomal protein catabolic process
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Accession:GO:0010498 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
Synonyms:exact_synonym: proteasome-mediated protein catabolic process;   proteasome-mediated protein catabolism


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proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATE1 arginyltransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25970626) MGI
Ensembl		 PMID:25970626 GO_REF:0000107 NCBI chr10:118,316,655...118,504,409
Ensembl chr10:121,730,231...121,917,346 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G BRINP1 BMP/retinoic acid inducible neural specific 1 acts_upstream_of_or_within ISO (PMID:25732823) MGI PMID:25732823 NCBI chr 9:90,296,199...90,499,503
Ensembl chr 9:118,646,433...118,792,727 		JBrowse link
G CUL4B cullin 4B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25970626) MGI
Ensembl		 PMID:25970626 GO_REF:0000107 NCBI chr  X:109,798,279...109,870,469
Ensembl chr  X:119,985,116...120,034,702 		JBrowse link
G DDB1 damage specific DNA binding protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25970626) MGI
Ensembl		 PMID:25970626 GO_REF:0000107 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805 		JBrowse link
G DDI1 DNA damage inducible 1 homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:98,981,511...98,983,500
Ensembl chr11:102,466,220...102,467,398 		JBrowse link
G DDI2 DNA damage inducible 1 homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,757,327...14,810,959
Ensembl chr 1:15,749,497...15,790,263
Ensembl chr 1:15,749,497...15,790,263 		JBrowse link
G DERL1 derlin 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 8:119,707,397...119,736,502
Ensembl chr 8:122,463,063...122,492,137 		JBrowse link
G DERL2 derlin 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr17:5,519,183...5,534,145
Ensembl chr17:5,514,440...5,526,363 		JBrowse link
G DERL3 derlin 3 involved_in IEA UniProt GO_REF:0000117 NCBI chr22:4,589,448...4,594,628
Ensembl chr22:22,673,908...22,678,444 		JBrowse link
G DTX4 deltex E3 ubiquitin ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:54,389,228...54,425,655
Ensembl chr11:57,839,228...57,874,337 		JBrowse link
G FBXO44 F-box protein 44 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25970626) Ensembl
MGI		 PMID:25970626 GO_REF:0000107 Ensembl chr 1:11,632,768...11,640,846 JBrowse link
G IFT80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:35733270) MGI PMID:35733270 NCBI chr 3:157,279,076...157,421,478
Ensembl chr 3:165,329,056...165,454,905 		JBrowse link
G LOC100972383 proteasome 20S subunit alpha 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:111,776,428...111,803,827
Ensembl chr 1:111,015,365...111,031,944 		JBrowse link
G LOC100979315 phorbol-12-myristate-13-acetate-induced protein 1 involved_in ISO (PMID:15901672) UniProt PMID:15901672 NCBI chr18:53,286,590...53,290,913
Ensembl chr18:56,611,098...56,615,449 		JBrowse link
G LOC100988585 transmembrane protein 220 acts_upstream_of ISO (PMID:25683716) MGI PMID:25683716 NCBI chr17:40,923,397...40,973,382
Ensembl chr17:45,703,642...45,720,520
Ensembl chr17:45,703,642...45,720,520 		JBrowse link
G MARCHF6 membrane associated ring-CH-type finger 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:10,666,978...10,753,050
Ensembl chr 5:10,524,958...10,608,046 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,188,390...17,196,315
Ensembl chr17:17,409,669...17,417,600 		JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 acts_upstream_of_or_within ISO (PMID:26797281) MGI PMID:26797281 NCBI chr 7:142,927,730...142,964,475
Ensembl chr 7:155,079,243...155,114,676 		JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:14627652) MGI PMID:14627652 NCBI chr17:36,389,549...36,425,161
Ensembl chr17:41,038,302...41,073,872 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:56,153,965...56,169,821
Ensembl chr11:59,595,120...59,607,828 		JBrowse link
G PSMA1 proteasome 20S subunit alpha 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:14,607,557...14,746,207
Ensembl chr11:14,298,860...14,314,780 		JBrowse link
G PSMA2 proteasome 20S subunit alpha 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:41,304,746...41,319,844
Ensembl chr 7:41,348,364...41,363,986 		JBrowse link
G PSMA3 proteasome 20S subunit alpha 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:38,836,869...38,864,152
Ensembl chr14:57,105,891...57,133,181 		JBrowse link
G PSMA4 proteasome 20S subunit alpha 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:57,468,590...57,477,390
Ensembl chr15:76,431,890...76,440,655 		JBrowse link
G PSMA6 proteasome 20S subunit alpha 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:16,044,300...16,069,521
Ensembl chr14:34,214,271...34,252,347 		JBrowse link
G PSMA7 proteasome 20S subunit alpha 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:58,502,446...58,509,175
Ensembl chr20:59,822,545...59,826,802 		JBrowse link
G PSMA8 proteasome 20S subunit alpha 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:19,391,216...19,447,259
Ensembl chr18:23,000,562...23,057,399 		JBrowse link
G PSMB2 proteasome 20S subunit beta 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:34,869,524...34,911,852
Ensembl chr 1:36,046,963...36,090,294 		JBrowse link
G RNF41 ring finger protein 41 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,693,349...32,710,866
Ensembl chr12:32,944,814...32,962,584 		JBrowse link
G SOCS6 suppressor of cytokine signaling 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20007709) MGI
Ensembl		 PMID:20007709 GO_REF:0000107 NCBI chr18:63,666,761...63,710,085
Ensembl chr18:66,994,489...66,996,096 		JBrowse link
G TRIM21 tripartite motif containing 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,588,083...4,596,942
Ensembl chr11:4,254,152...4,262,981 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17981124) Ensembl
MGI		 PMID:17981124 GO_REF:0000107 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234 		JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANAPC1 anaphase promoting complex subunit 1 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr2A:90,143,737...90,262,215 JBrowse link
G ANAPC10 anaphase promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:137,339,959...137,445,172
Ensembl chr 4:149,001,637...149,105,836 		JBrowse link
G ANAPC11 anaphase promoting complex subunit 11 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:76,297,262...76,305,826
Ensembl chr17:82,002,135...82,007,921 		JBrowse link
G ANAPC13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 3:131,524,227...131,532,624
Ensembl chr 3:138,995,860...139,004,179 		JBrowse link
G ANAPC15 anaphase promoting complex subunit 15 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr11:67,186,653...67,193,102
Ensembl chr11:70,411,031...70,416,484 		JBrowse link
G ANAPC16 anaphase promoting complex subunit 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr10:68,738,800...68,758,677
Ensembl chr10:71,206,662...71,224,186 		JBrowse link
G ANAPC2 anaphase promoting complex subunit 2 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 9:108,234,949...108,248,227
Ensembl chr 9:137,204,356...137,217,652 		JBrowse link
G ANAPC4 anaphase promoting complex subunit 4 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 4:19,777,750...19,817,459
Ensembl chr 4:25,061,930...25,101,260 		JBrowse link
G ANAPC5 anaphase promoting complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:118,906,482...118,950,913
Ensembl chr12:122,279,227...122,324,428 		JBrowse link
G ANAPC7 anaphase promoting complex subunit 7 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr12:107,946,756...107,977,489
Ensembl chr12:111,338,045...111,368,466 		JBrowse link
G CDC16 cell division cycle 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:95,300,763...95,340,762
Ensembl chr13:114,369,774...114,407,267 		JBrowse link
G CDC20 cell division cycle 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:42,660,338...42,664,618
Ensembl chr 1:44,039,971...44,044,497 		JBrowse link
G CDC20B cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:58,856,370...58,918,463
Ensembl chr 5:60,478,977...60,538,264 		JBrowse link
G CDC23 cell division cycle 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:133,566,022...133,591,528
Ensembl chr 5:139,699,421...139,724,991 		JBrowse link
G CDC26 cell division cycle 26 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:84,364,810...84,373,406
Ensembl chr 9:112,736,864...112,745,466 		JBrowse link
G CDC27 cell division cycle 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:10,259,194...10,331,011
Ensembl chr17:10,473,646...10,545,549 		JBrowse link
G CUL3 cullin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10500095) MGI
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chr2B:111,714,533...111,827,080
Ensembl chr2B:230,289,195...230,378,991 		JBrowse link
G ECRG4 ECRG4 augurin precursor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20404145) Ensembl
MGI
TreeGrafter		 PMID:20404145 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:95,762,149...95,774,834
Ensembl chr2A:107,140,895...107,152,967 		JBrowse link
G FBXO31 F-box protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:67,997,481...68,053,081
Ensembl chr16:87,322,364...87,377,104 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:2,533,172...2,564,301
Ensembl chr19:3,500,117...3,510,867 		JBrowse link
G LOC100967699 anaphase-promoting complex subunit 10-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:51,509,349...51,510,537 JBrowse link
G RNF7 ring finger protein 7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:138,772,581...138,780,763
Ensembl chr 3:146,369,779...146,377,233 		JBrowse link
G UBE2C ubiquitin conjugating enzyme E2 C involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,152,219...42,156,246
Ensembl chr20:43,239,382...43,243,464 		JBrowse link
G UBE2S ubiquitin conjugating enzyme E2 S involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,444,270...52,450,770
Ensembl chr19:61,133,934...61,140,786 		JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEMF nuclear export mediator factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,372,390...30,441,660
Ensembl chr14:48,679,252...48,748,258 		JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNF126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:491,699...494,175
Ensembl chr19:614,236...618,659 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 1:18,032,528...18,168,954
Ensembl chr 1:19,079,779...19,215,578 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913 		JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMFR autocrine motility factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:36,647,792...36,711,782
Ensembl chr16:55,780,633...55,843,744 		JBrowse link
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr2A:74,593,260...74,596,372
Ensembl chr2A:76,099,634...76,102,464 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G BRSK2 BR serine/threonine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:1,424,873...1,495,630
Ensembl chr11:1,473,129...1,521,339 		JBrowse link
G CCDC47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25009997) Ensembl
MGI		 PMID:25009997 GO_REF:0000107 NCBI chr17:57,825,328...57,853,626
Ensembl chr17:62,970,109...62,998,465 		JBrowse link
G DERL1 derlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:119,707,397...119,736,502
Ensembl chr 8:122,463,063...122,492,137 		JBrowse link
G DERL2 derlin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:5,519,183...5,534,145
Ensembl chr17:5,514,440...5,526,363 		JBrowse link
G DERL3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:4,589,448...4,594,628
Ensembl chr22:22,673,908...22,678,444 		JBrowse link
G DNAJB12 DnaJ heat shock protein family (Hsp40) member B12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:68,852,913...68,875,307
Ensembl chr10:71,319,836...71,341,789 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:15936278) BHF-UCL PMID:15936278 NCBI chr2B:106,536,846...106,544,430
Ensembl chr2B:225,127,967...225,135,556 		JBrowse link
G DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:100,555,527...100,560,052
Ensembl chr 7:113,274,015...113,279,105 		JBrowse link
G DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:69,991,321...70,059,693
Ensembl chr2B:187,799,532...187,864,496 		JBrowse link
G ECPAS Ecm29 proteasome adaptor and scaffold involved_in ISO (PMID:15496406) UniProt PMID:15496406 NCBI chr 9:82,499,075...82,623,007
Ensembl chr 9:110,662,590...110,786,472 		JBrowse link
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11375934) Ensembl
MGI		 PMID:11375934 GO_REF:0000107 NCBI chr 3:5,133,927...5,162,485
Ensembl chr 3:5,234,123...5,262,003 		JBrowse link
G EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:31,443,590...31,475,430
Ensembl chr20:32,567,799...32,598,998 		JBrowse link
G EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:160,217,526...160,281,785
Ensembl chr 1:164,372,977...164,436,977 		JBrowse link
G EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (MGI:6467680|PMID:17707796) UniProt PMID:17707796 MGI:6467680 NCBI chr2A:87,688,732...87,759,580
Ensembl chr2A:89,596,833...89,667,468 		JBrowse link
G ERLEC1 endoplasmic reticulum lectin 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr2A:53,930,280...53,962,178
Ensembl chr2A:54,842,228...54,874,068 		JBrowse link
G ERLIN1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,756,261...96,791,925
Ensembl chr10:100,238,320...100,273,942 		JBrowse link
G ERLIN2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:37,034,391...37,057,164
Ensembl chr 8:34,212,704...34,233,583 		JBrowse link
G FAF2 Fas associated factor family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:171,743,071...171,804,687
Ensembl chr 5:178,814,100...178,876,108 		JBrowse link
G FBXO2 F-box protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15723043) Ensembl
MGI		 PMID:15723043 GO_REF:0000107 NCBI chr 1:10,408,853...10,415,174
Ensembl chr 1:11,626,713...11,633,171 		JBrowse link
G FBXO6 F-box protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:10,414,856...10,436,406
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837 		JBrowse link
G FOXRED2 FAD dependent oxidoreductase domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:17,402,084...17,421,990
Ensembl chr22:35,239,076...35,258,745 		JBrowse link
G GET4 guided entry of tail-anchored proteins factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:1,032,739...1,053,062
Ensembl chr 7:1,255,130...1,267,800 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:37,210,170...37,221,961
Ensembl chr16:56,343,025...56,355,164 		JBrowse link
G HSP90B1 heat shock protein 90 beta family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:101,506,845...101,524,407
Ensembl chr12:104,901,997...104,919,329 		JBrowse link
G JKAMP JNK1/MAPK8 associated membrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:40,087,037...40,107,897
Ensembl chr14:58,351,807...58,372,653 		JBrowse link
G LOC100970299 ubiquitin recognition factor in ER-associated degradation protein 1-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:20,088,370...20,089,577 JBrowse link
G LOC112441188 protein transport protein Sec61 subunit beta-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,865,321...47,865,800 JBrowse link
G MAN1A1 mannosidase alpha class 1A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:116,984,842...117,157,623
Ensembl chr 6:121,127,656...121,298,196 		JBrowse link
G MAN1B1 mannosidase alpha class 1B member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15294975) Ensembl
MGI		 PMID:15294975 GO_REF:0000107 NCBI chr 9:108,148,020...108,168,931
Ensembl chr 9:137,118,361...137,139,066 		JBrowse link
G NPLOC4 NPL4 homolog, ubiquitin recognition factor involved_in ISO PMID:12847084 ComplexPortal PMID:12847084 RGD:10047330 NCBI chr17:76,012,756...76,092,901
Ensembl chr17:81,713,582...81,788,714 		JBrowse link
G OS9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr12:31,205,239...31,232,769
Ensembl chr12:31,463,716...31,493,076 		JBrowse link
G RCN3 reticulocalbin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:46,540,352...46,556,508
Ensembl chr19:55,463,535...55,477,478 		JBrowse link
G RHBDD1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:114,041,381...114,245,220
Ensembl chr2B:232,897,487...233,057,578 		JBrowse link
G RNF103 ring finger protein 103 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:86,659,672...86,680,154 JBrowse link
G RNF139 ring finger protein 139 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:121,158,715...121,172,069
Ensembl chr 8:123,912,589...123,924,720 		JBrowse link
G RNF185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:12,183,591...12,230,371
Ensembl chr22:30,020,353...30,066,266 		JBrowse link
G RNF5 ring finger protein 5 involved_in ISO (PMID:19269966), (PMID:24019521) UniProt PMID:19269966 PMID:24019521 NCBI chr 6:31,825,799...31,828,188 JBrowse link
G SDF2L1 stromal cell derived factor 2 like 1 acts_upstream_of_or_within ISO PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chr22:3,764,899...3,766,932
Ensembl chr22:20,248,566...20,250,607 		JBrowse link
G SEC61B SEC61 translocon subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:70,312,061...70,320,448
Ensembl chr 9:98,431,059...98,438,914 		JBrowse link
G SEL1L SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:62,050,695...62,111,489
Ensembl chr14:81,248,441...81,309,597 		JBrowse link
G SEL1L2 SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:13,815,019...13,966,202
Ensembl chr20:13,800,212...13,945,070 		JBrowse link
G SELENOS selenoprotein S involved_in ISO (PMID:15215856) UniProt PMID:15215856 NCBI chr15:79,995,678...80,002,159
Ensembl chr15:99,279,203...99,285,682 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,778,728...1,808,199
Ensembl chr19:2,736,565...2,763,440 		JBrowse link
G STT3B STT3 oligosaccharyltransferase complex catalytic subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:31,454,297...31,557,189
Ensembl chr 3:31,771,265...31,873,381 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:694,414...696,682 JBrowse link
G SYVN1 synoviolin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21245296) Ensembl
MGI		 PMID:21245296 GO_REF:0000107 NCBI chr11:60,489,626...60,496,945
Ensembl chr11:63,829,138...63,834,364 		JBrowse link
G TMEM129 transmembrane protein 129, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,853,126...1,858,461
Ensembl chr 4:1,767,517...1,772,643 		JBrowse link
G TMEM67 transmembrane protein 67 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:90,378,623...90,442,904
Ensembl chr 8:92,324,402...92,387,437 		JBrowse link
G TMUB1 transmembrane and ubiquitin like domain containing 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:142,667,937...142,670,443
Ensembl chr 7:154,820,388...154,822,294 		JBrowse link
G TMUB2 transmembrane and ubiquitin like domain containing 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:13,206,091...13,210,859
Ensembl chr17:13,369,741...13,374,260 		JBrowse link
G TOR1A torsin family 1 member A involved_in ISO (MGI:3712415|PMID:17200151) UniProt PMID:17200151 MGI:3712415 NCBI chr 9:100,940,554...100,951,726 JBrowse link
G TRIM13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:31,137,236...31,153,398
Ensembl chr13:49,889,041...49,900,488 		JBrowse link
G TRIM25 tripartite motif containing 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:50,965,592...50,991,630
Ensembl chr17:55,826,458...55,852,422 		JBrowse link
G UBE2G2 ubiquitin conjugating enzyme E2 G2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11278356) Ensembl
MGI		 PMID:11278356 GO_REF:0000107 NCBI chr21:31,062,516...31,095,044
Ensembl chr21:44,355,235...44,388,373 		JBrowse link
G UBE2J1 ubiquitin conjugating enzyme E2 J1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24020373)
(PMID:21245296)		 Ensembl
MGI		 PMID:21245296 PMID:24020373 GO_REF:0000107 NCBI chr 6:87,196,938...87,223,414
Ensembl chr 6:90,471,136...90,497,334 		JBrowse link
G UBE2J2 ubiquitin conjugating enzyme E2 J2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,756...28,672
Ensembl chr 1:1,211,502...1,231,530 		JBrowse link
G UBE4A ubiquitination factor E4A involved_in IEA InterPro GO_REF:0000002 NCBI chr11:113,193,986...113,233,660
Ensembl chr11:117,131,100...117,162,385 		JBrowse link
G UBE4B ubiquitination factor E4B involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:8,801,707...8,949,465
Ensembl chr 1:10,033,084...10,178,759 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:41,170,416...41,218,656
Ensembl chr 9:82,597,507...82,645,587 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,829,844...48,835,040
Ensembl chr  X:56,981,985...56,983,859 		JBrowse link
G UBXN4 UBX domain protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:24,081,450...24,124,876
Ensembl chr2B:139,810,274...139,850,671 		JBrowse link
G UBXN6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,463,259...3,475,428
Ensembl chr19:4,410,952...4,423,092 		JBrowse link
G UBXN8 UBX domain protein 8 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:30,057,469...30,080,778
Ensembl chr 8:27,234,039...27,268,741 		JBrowse link
G UFD1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:2,209,590...2,238,449
Ensembl chr22:17,885,073...17,913,506 		JBrowse link
G UMOD uromodulin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28437467) Ensembl
MGI		 PMID:28437467 GO_REF:0000107 NCBI chr16:17,960,456...17,980,338
Ensembl chr16:20,430,085...20,449,121 		JBrowse link
G USP19 ubiquitin specific peptidase 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,032,373...49,045,238
Ensembl chr 3:50,100,216...50,125,112 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G WFS1 wolframin ER transmembrane glycoprotein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 4:6,345,864...6,379,287 JBrowse link
G YOD1 YOD1 deubiquitinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:182,621,404...182,635,619
Ensembl chr 1:186,930,209...186,932,225
Ensembl chr 1:186,930,209...186,932,225 		JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HM13 histocompatibility minor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:27,803,597...27,859,384
Ensembl chr20:28,441,285...28,501,001 		JBrowse link
G RHBDD1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:114,041,381...114,245,220
Ensembl chr2B:232,897,487...233,057,578 		JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP11 aquaporin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:72,653,721...72,673,698
Ensembl chr11:76,295,778...76,315,292 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,778,728...1,808,199
Ensembl chr19:2,736,565...2,763,440 		JBrowse link
G SVIP small VCP interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:22,828,321...22,837,536
Ensembl chr11:22,735,361...22,744,558 		JBrowse link
G UBXN1 UBX domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:58,033,304...58,035,893
Ensembl chr11:61,386,797...61,389,404 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:23,928,207...24,003,550
Ensembl chr2A:24,038,567...24,097,309 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:14,104,754...14,158,402
Ensembl chr18:17,745,733...17,797,070 		JBrowse link
G USP25 ubiquitin specific peptidase 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:2,468,993...2,618,200
Ensembl chr21:15,724,729...15,982,182 		JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:84,488,339...84,503,360
Ensembl chr 9:112,859,171...112,873,784 		JBrowse link
G F8A1 coagulation factor VIII associated 1 involved_in ISO (PMID:27815841) UniProt PMID:27815841 NCBI chr  X:144,366,123...144,367,842 JBrowse link
G F8A3 coagulation factor VIII associated 3 involved_in ISO (PMID:27815841) UniProt PMID:27815841 NCBI chr  X:144,925,422...144,927,166 JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:56,135,482...56,147,046
Ensembl chr16:75,483,459...75,495,019 		JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in ISO (MGI:6148636|PMID:17517623) ARUK-UCL PMID:17517623 MGI:6148636 RGD:13514081 NCBI chr 6:43,842,796...43,849,637
Ensembl chr 6:45,125,773...45,133,872 		JBrowse link
G LAMP3 lysosomal associated membrane protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:180,152,363...180,193,223
Ensembl chr 3:188,324,660...188,363,268 		JBrowse link
G LOC100985575 40-kDa huntingtin-associated protein involved_in ISO (PMID:27815841) UniProt PMID:27815841 NCBI chr  X:144,851,466...144,853,185 JBrowse link
G LOC100988585 transmembrane protein 220 acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chr17:40,923,397...40,973,382
Ensembl chr17:45,703,642...45,720,520
Ensembl chr17:45,703,642...45,720,520 		JBrowse link
G MARCHF7 membrane associated ring-CH-type finger 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:47,004,211...47,059,901
Ensembl chr2B:164,377,605...164,432,907 		JBrowse link
G OPHN1 oligophrenin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:57,288,297...57,674,685
Ensembl chr  X:67,359,364...67,739,114 		JBrowse link
G PRKCG protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:50,823,372...50,849,003
Ensembl chr19:59,672,097...59,695,977 		JBrowse link
G PSME3IP1 proteasome activator subunit 3 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:37,430,698...37,464,089
Ensembl chr16:56,563,353...56,596,619 		JBrowse link
G PSMF1 proteasome inhibitor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,275,662...1,325,410
Ensembl chr20:1,043,513...1,092,237 		JBrowse link
G USP19 ubiquitin specific peptidase 19 involved_in ISO (MGI:5614537|PMID:25088257) ParkinsonsUK-UCL PMID:25088257 MGI:5614537 NCBI chr 3:49,032,373...49,045,238
Ensembl chr 3:50,100,216...50,125,112 		JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG5 BAG cochaperone 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:84,182,879...84,189,180
Ensembl chr14:103,997,524...103,998,927 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G CAMLG calcium modulating ligand involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,138,644...130,144,540
Ensembl chr 5:136,282,910...136,295,382 		JBrowse link
G CCAR2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,854,803...21,870,556
Ensembl chr 8:18,794,027...18,808,571 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr16:9,887,877...10,124,500
Ensembl chr16:11,109,869...11,343,512 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr20:689,494...752,092
Ensembl chr20:456,629...521,126 		JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr16:38,426,399...38,466,575
Ensembl chr16:57,557,270...57,596,218 		JBrowse link
G CSNK2B casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr 6:31,327,250...31,331,250 JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:3,276,292...3,290,433
Ensembl chr20:3,038,779...3,052,789 		JBrowse link
G EIF3H eukaryotic translation initiation factor 3 subunit H involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:113,320,059...113,440,769
Ensembl chr 8:115,863,490...115,973,872 		JBrowse link
G FHIT fragile histidine triad diadenosine triphosphatase involved_in ISO (PMID:15313915) UniProt PMID:15313915 NCBI chr 3:59,670,777...61,177,974 JBrowse link
G GIPC1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:14,041,192...14,059,402
Ensembl chr19:14,885,185...14,889,701 		JBrowse link
G HFE homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:25,921,663...25,930,852
Ensembl chr 6:26,580,358...26,588,591 		JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chr 6:43,842,796...43,849,637
Ensembl chr 6:45,125,773...45,133,872 		JBrowse link
G KLHL40 kelch like family member 40 acts_upstream_of_or_within ISO (PMID:24960163) MGI PMID:24960163 NCBI chr 3:42,592,977...42,600,100
Ensembl chr 3:43,657,128...43,664,055 		JBrowse link
G MAP1A microtubule associated protein 1A involved_in ISO (MGI:5703671|PMID:26609151) ARUK-UCL PMID:26609151 MGI:5703671 NCBI chr15:22,472,641...22,493,293
Ensembl chr15:40,627,099...40,647,752 		JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381 		JBrowse link
G N4BP1 NEDD4 binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,809,881...28,881,352
Ensembl chr16:47,698,353...47,769,755 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:22522597) UniProt PMID:22522597 NCBI chr19:44,739,739...44,751,303 JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,798,219...60,840,948
Ensembl chr  X:70,852,687...70,894,921 		JBrowse link
G PANO1 proapoptotic nucleolar protein 1 involved_in ISO (PMID:22094112) UniProt PMID:22094112 NCBI chr11:814,040...816,633 JBrowse link
G PARK7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,722,260...6,745,915
Ensembl chr 1:7,969,280...7,993,271 		JBrowse link
G PBK PDZ binding kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chr 8:27,084,789...27,112,986
Ensembl chr 8:24,285,395...24,313,658 		JBrowse link
G PHF20L1 PHD finger protein 20 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:129,427,157...129,500,633
Ensembl chr 8:132,403,053...132,474,452 		JBrowse link
G RPL11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:22,883,157...22,887,806
Ensembl chr 1:23,868,688...23,873,313 		JBrowse link
G RPP21 ribonuclease P/MRP subunit p21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:30,122,996...30,124,784
Ensembl chr 6:30,975,260...30,995,764 		JBrowse link
G RYBP RING1 and YY1 binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:72,315,494...72,389,328
Ensembl chr 3:74,247,807...74,318,398 		JBrowse link
G SENP1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chr12:40,624,200...40,689,837
Ensembl chr12:41,507,348...41,558,969 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611981) Ensembl
MGI		 PMID:16611981 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22285184) Ensembl
MGI		 PMID:22285184 GO_REF:0000107 NCBI chr 3:47,487,948...47,683,623
Ensembl chr 3:48,590,221...48,781,248 		JBrowse link
G TAF9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chr 5:44,630,503...44,635,760 JBrowse link
G TLK2 tousled like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:56,542,670...56,678,294
Ensembl chr17:61,689,998...61,830,394 		JBrowse link
G TRIM39 tripartite motif containing 39 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:30,104,381...30,121,649
Ensembl chr 6:30,975,260...30,995,764 		JBrowse link
G TTC36 tetratricopeptide repeat domain 36 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31537781) Ensembl
MGI		 PMID:31537781 GO_REF:0000107 NCBI chr11:113,364,559...113,368,586
Ensembl chr11:117,295,191...117,298,928 		JBrowse link
G UBXN1 UBX domain protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:58,033,304...58,035,893
Ensembl chr11:61,386,797...61,389,404 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:168,471,501...168,519,366
Ensembl chr 1:172,764,606...172,811,880 		JBrowse link
G USP26 ubiquitin specific peptidase 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,155,933...122,160,000
Ensembl chr  X:132,463,140...132,465,887 		JBrowse link
G USP38 ubiquitin specific peptidase 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:135,545,818...135,582,520
Ensembl chr 4:146,844,850...146,881,486 		JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,825,332...7,895,095
Ensembl chr16:9,065,858...9,106,146 		JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:33,535,543...33,683,220
Ensembl chr  X:41,232,041...41,379,910 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:28,685,294...28,777,176
Ensembl chr10:29,042,331...29,130,591 		JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DERL2 derlin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:5,519,183...5,534,145
Ensembl chr17:5,514,440...5,526,363 		JBrowse link
G DERL3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:4,589,448...4,594,628
Ensembl chr22:22,673,908...22,678,444 		JBrowse link
G ERLEC1 endoplasmic reticulum lectin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:53,930,280...53,962,178
Ensembl chr2A:54,842,228...54,874,068 		JBrowse link
G OS9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,205,239...31,232,769
Ensembl chr12:31,463,716...31,493,076 		JBrowse link
G SVIP small VCP interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:22,828,321...22,837,536
Ensembl chr11:22,735,361...22,744,558 		JBrowse link
G UBAC2 UBA domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:80,370,475...80,554,055
Ensembl chr13:99,509,508...99,692,537 		JBrowse link
G UBE2G2 ubiquitin conjugating enzyme E2 G2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:31,062,516...31,095,044
Ensembl chr21:44,355,235...44,388,373 		JBrowse link
G UBE2J1 ubiquitin conjugating enzyme E2 J1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:87,196,938...87,223,414
Ensembl chr 6:90,471,136...90,497,334 		JBrowse link
G YOD1 YOD1 deubiquitinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:182,621,404...182,635,619
Ensembl chr 1:186,930,209...186,932,225
Ensembl chr 1:186,930,209...186,932,225 		JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PABPN1L PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chr16:69,579,421...69,583,803
Ensembl chr16:89,234,156...89,237,595 		JBrowse link
G STYX serine/threonine/tyrosine interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:33,326,587...33,371,399
Ensembl chr14:51,610,523...51,651,096 		JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKIRIN2 akirin 2 acts_upstream_of_positive_effect ISO (PMID:34711951) UniProt PMID:34711951 NCBI chr 6:85,549,728...85,577,114 JBrowse link
G CUL3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:111,714,533...111,827,080
Ensembl chr2B:230,289,195...230,378,991 		JBrowse link
G KLHL15 kelch like family member 15 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:16,583,117...16,625,029
Ensembl chr  X:23,956,827...23,997,742 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:37478846), (PMID:37478862) UniProt PMID:37478846 PMID:37478862 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913 		JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:42,660,338...42,664,618
Ensembl chr 1:44,039,971...44,044,497 		JBrowse link
G CDC20B cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:58,856,370...58,918,463
Ensembl chr 5:60,478,977...60,538,264 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:2,533,172...2,564,301
Ensembl chr19:3,500,117...3,510,867 		JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chr14:72,693,446...72,741,772 JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G BCAP31 B cell receptor associated protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,265,920...143,274,956
Ensembl chr  X:153,137,992...153,161,628 		JBrowse link
G CAV1 caveolin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:108,497,125...108,533,090
Ensembl chr 7:121,193,424...121,229,655 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:37,210,170...37,221,961
Ensembl chr16:56,343,025...56,355,164 		JBrowse link
G RNF185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:12,183,591...12,230,371
Ensembl chr22:30,020,353...30,066,266 		JBrowse link
G RNFT1 ring finger protein, transmembrane 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:54,016,689...54,029,100
Ensembl chr17:58,858,416...58,869,908 		JBrowse link
G RNFT2 ring finger protein, transmembrane 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:114,315,117...114,430,273
Ensembl chr12:117,691,632...117,804,833 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,778,728...1,808,199
Ensembl chr19:2,736,565...2,763,440 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:694,414...696,682 JBrowse link
G TMEM259 transmembrane protein 259 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr19:983,507...994,212 JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chr 8:90,378,623...90,442,904
Ensembl chr 8:92,324,402...92,387,437 		JBrowse link
G TMX1 thioredoxin related transmembrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:31,844,418...31,861,911
Ensembl chr14:50,129,568...50,147,057 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:41,170,416...41,218,656
Ensembl chr 9:82,597,507...82,645,587 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,829,844...48,835,040
Ensembl chr  X:56,981,985...56,983,859 		JBrowse link
G USP13 ubiquitin specific peptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:176,685,541...176,818,360
Ensembl chr 3:184,855,388...184,983,158 		JBrowse link
G WFS1 wolframin ER transmembrane glycoprotein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 4:6,345,864...6,379,287 JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG2 BAG cochaperone 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:56,730,297...56,743,123
Ensembl chr 6:58,360,889...58,373,733 		JBrowse link
G DAB2IP DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:92,696,798...92,912,425
Ensembl chr 9:121,143,457...121,254,336 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:3,276,292...3,290,433
Ensembl chr20:3,038,779...3,052,789 		JBrowse link
G ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19416853) MGI
TreeGrafter
Ensembl		 PMID:19416853 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:134,819,568...134,833,508
Ensembl chr 5:140,940,578...140,955,140 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:144,660,676...144,874,404
Ensembl chr 4:156,312,274...156,402,351 		JBrowse link
G FMR1 fragile X messenger ribonucleoprotein 1 involved_in ISO (MGI:5770038|PMID:24709664) UniProt PMID:24709664 MGI:5770038 NCBI chr  X:136,937,889...136,976,828
Ensembl chr  X:147,365,748...147,405,321 		JBrowse link
G KCNE2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in IEA Ensembl GO_REF:0000107
G LOC100995677 26S proteasome regulatory subunit 10B-like involved_in IEA GOC GO_REF:0000108 NCBI chr 8:52,496,558...52,508,697
Ensembl chr14:51,587,467...51,608,044 		JBrowse link
G LOC106634235 uncharacterized LOC106634235 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:20,548,631...20,739,999
Ensembl chr21:34,107,443...34,107,814
Ensembl chr21:34,107,443...34,107,814 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:29,015,155...29,016,987 JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chr19:1,279,139...1,283,079
Ensembl chr19:2,250,678...2,254,179 		JBrowse link
G OSBPL7 oxysterol binding protein like 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:9,715,464...9,729,950
Ensembl chr17:9,897,768...9,912,065 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr14:70,873,846...70,889,988
Ensembl chr14:90,225,405...90,241,641 		JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:95,338,743...95,359,353
Ensembl chr 7:108,083,203...108,103,494 		JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr11:47,366,986...47,374,677
Ensembl chr11:47,920,295...47,927,654 		JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IEA GOC GO_REF:0000108 NCBI chr19:37,018,112...37,028,490
Ensembl chr19:45,533,141...45,543,245 		JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 involved_in IEA GOC GO_REF:0000108 NCBI chr17:57,906,934...57,911,551
Ensembl chr17:63,051,050...63,055,907 		JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 involved_in IEA GOC GO_REF:0000108 NCBI chr14:33,303,689...33,324,502
Ensembl chr14:51,587,467...51,608,044 		JBrowse link
G RNF40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chr16:24,194,293...24,207,460
Ensembl chr16:31,129,352...31,142,280 		JBrowse link
G TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:85,683,455...85,741,118
Ensembl chr12:88,989,033...89,046,630 		JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:40,735,483...40,740,208
Ensembl chr 6:42,043,900...42,048,578 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15937334) Ensembl
MGI		 PMID:15937334 GO_REF:0000107 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756 		JBrowse link
G ANKIB1 ankyrin repeat and IBR domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:84,243,929...84,399,358
Ensembl chr 7:97,841,233...97,995,816 		JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:51,423,132...51,534,278
Ensembl chr15:70,187,722...70,297,226 		JBrowse link
G ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:48,844,161...48,910,183
Ensembl chr 3:49,926,453...49,991,924 		JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chr 3:11,208,600...11,488,757
Ensembl chr 3:11,554,100...11,833,398 		JBrowse link
G AURKA aurora kinase A acts_upstream_of_or_within ISO (PMID:17060449) MGI PMID:17060449 NCBI chr20:52,707,757...52,730,579
Ensembl chr20:53,994,881...54,017,339 		JBrowse link
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI
TreeGrafter		 PMID:16601693 GO_REF:0000107 GO_REF:0000118 Ensembl chr16:278,239...337,891 JBrowse link
G AXIN2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086 		JBrowse link
G BAG2 BAG cochaperone 2 NOT|involved_in ISO (MGI:6148635|PMID:19228967) ARUK-UCL PMID:19228967 MGI:6148635 NCBI chr 6:56,730,297...56,743,123
Ensembl chr 6:58,360,889...58,373,733 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22302990) MGI
Ensembl		 PMID:22302990 GO_REF:0000107 NCBI chr 4:114,024,949...114,072,000
Ensembl chr 4:125,161,804...125,208,350 		JBrowse link
G CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:69,592,293...69,662,321
Ensembl chr16:89,246,545...89,347,435 		JBrowse link
G CHFR checkpoint with forkhead and ring finger domains involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22285184) Ensembl
MGI		 PMID:22285184 GO_REF:0000107 NCBI chr12:130,318,971...130,366,282
Ensembl chr12:134,923,458...134,968,832
Ensembl chr12:134,923,458...134,968,832 		JBrowse link
G CLU clusterin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:26,867,973...26,884,838
Ensembl chr 8:24,070,053...24,083,523 		JBrowse link
G COP1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:151,459,354...151,727,131
Ensembl chr 1:155,156,185...155,425,156 		JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:144,919,775...144,977,105
Ensembl chr 5:150,929,420...150,985,912 		JBrowse link
G CSNK1D casein kinase 1 delta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:76,648,677...76,683,054
Ensembl chr17:82,462,467...82,494,348 		JBrowse link
G CSNK1E casein kinase 1 epsilon involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:19,202,599...19,229,344
Ensembl chr22:37,027,094...37,072,942 		JBrowse link
G DAB2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:70,951,198...71,004,836
Ensembl chr 5:76,022,143...76,041,443 		JBrowse link
G DDA1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:16,797,750...16,808,427
Ensembl chr19:17,771,925...17,785,267 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:3,276,292...3,290,433
Ensembl chr20:3,038,779...3,052,789 		JBrowse link
G DET1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:67,203,101...67,238,185
Ensembl chr15:86,411,937...86,444,789 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:106,536,846...106,544,430
Ensembl chr2B:225,127,967...225,135,556 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:92,469...106,748
Ensembl chr 1:1,292,052...1,301,008 		JBrowse link
G FBXO22 F-box protein 22 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19319192) TreeGrafter
MGI		 PMID:19319192 GO_REF:0000118 NCBI chr15:54,817,076...54,849,271
Ensembl chr15:74,410,213...74,441,609 		JBrowse link
G FBXW8 F-box and WD repeat domain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:114,487,476...114,607,384
Ensembl chr12:117,863,254...117,983,269 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,270,316...7,272,365
Ensembl chr17:7,257,659...7,260,276 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (MGI:5501380|PMID:23707074) ParkinsonsUK-UCL PMID:23707074 MGI:5501380 NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851 		JBrowse link
G GCLC glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17189825) Ensembl
MGI		 PMID:17189825 GO_REF:0000107 NCBI chr 6:53,052,145...53,102,794
Ensembl chr 6:54,687,315...54,734,994 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,118,330...39,130,768
Ensembl chr19:47,710,197...47,726,948 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chr 3:116,943,205...117,215,001
Ensembl chr 3:123,861,379...124,126,771 		JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chr 6:31,476,710...31,491,411 JBrowse link
G HSPA1B heat shock protein family A (Hsp70) member 1B involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chr 6:31,488,882...31,491,412 JBrowse link
G HSPBP1 HSPA (Hsp70) binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,303,121...52,322,771
Ensembl chr19:60,995,202...61,013,756 		JBrowse link
G IL33 interleukin 33 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chr 9:6,027,014...6,069,540
Ensembl chr 9:6,234,178...6,248,624 		JBrowse link
G KLHL40 kelch like family member 40 involved_in ISO (MGI:5700633|PMID:25940086) UniProt PMID:25940086 MGI:5700633 NCBI chr 3:42,592,977...42,600,100
Ensembl chr 3:43,657,128...43,664,055 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:48,343,621...48,488,337
Ensembl chr12:49,205,930...49,350,462 		JBrowse link
G MAPK8 mitogen-activated protein kinase 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chr10:45,806,748...45,936,362 JBrowse link
G MAPK9 mitogen-activated protein kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:175,437,167...175,495,469
Ensembl chr 5:182,748,381...182,795,135 		JBrowse link
G MDM2 MDM2 proto-oncogene involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chr12:66,322,340...66,357,010
Ensembl chr12:69,102,084...69,133,278 		JBrowse link
G NKD2 NKD inhibitor of WNT signaling pathway 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:1,075,172...1,081,664 JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:25818168), (PMID:27323397)
(MGI:5897550|PMID:21804542)		 UniProt PMID:21804542 PMID:25818168 PMID:27323397 MGI:5897550 NCBI chr19:44,739,739...44,751,303 JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:142,927,730...142,964,475
Ensembl chr 7:155,079,243...155,114,676 		JBrowse link
G PABIR1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:56,007,323...56,011,655
Ensembl chr 9:67,544,489...67,545,352 		JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,006,718...47,141,035
Ensembl chr15:65,276,530...65,410,105 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,420,972...14,432,821
Ensembl chr16:23,928,773...23,940,779 		JBrowse link
G PLK2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chr 5:55,543,828...55,550,116
Ensembl chr 5:57,177,836...57,184,793 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G PSEN2 presenilin 2 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295 		JBrowse link
G PSMD10 proteasome 26S subunit, non-ATPase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:97,182,090...97,189,523
Ensembl chr  X:107,552,186...107,559,616 		JBrowse link
G RACK1 receptor for activated C kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:176,462,991...176,470,153
Ensembl chr 5:183,712,665...183,720,128 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,508,232...12,516,068
Ensembl chr19:13,250,718...13,258,482 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G RCHY1 ring finger and CHY zinc finger domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:48,691,213...48,725,979
Ensembl chr 4:54,526,202...54,561,048 		JBrowse link
G RFPL1 ret finger protein like 1 involved_in ISO (PMID:20725088) UniProt PMID:20725088
G RNF14 ring finger protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:137,316,493...137,351,061
Ensembl chr 5:143,441,497...143,461,355 		JBrowse link
G RNF144A ring finger protein 144A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:6,925,266...7,082,731
Ensembl chr2A:7,085,369...7,184,838 		JBrowse link
G RNF144B ring finger protein 144B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:18,124,935...18,316,842
Ensembl chr 6:18,586,953...18,668,674 		JBrowse link
G RNF180 ring finger protein 180 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363970), (PMID:23926250) Ensembl
MGI
TreeGrafter		 PMID:18363970 PMID:23926250 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:49,624,452...49,841,741
Ensembl chr 5:51,280,064...51,454,750 		JBrowse link
G RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:96,897,388...96,950,440
Ensembl chr 8:99,070,813...99,123,495 		JBrowse link
G RNF19B ring finger protein 19B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:32,228,220...32,256,745
Ensembl chr 1:33,414,611...33,441,986 		JBrowse link
G RNF217 ring finger protein 217 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:122,747,128...122,875,930
Ensembl chr 6:126,867,604...126,992,867 		JBrowse link
G SH3RF1 SH3 domain containing ring finger 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:161,319,093...161,495,917
Ensembl chr 4:173,394,739...173,567,096 		JBrowse link
G SH3RF2 SH3 domain containing ring finger 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:141,386,060...141,530,993
Ensembl chr 5:147,401,188...147,545,703 		JBrowse link
G SH3RF3 SH3 domain containing ring finger 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:92,137,951...92,519,627
Ensembl chr2A:110,848,452...111,219,915 		JBrowse link
G SIRT2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:35,984,453...36,005,582
Ensembl chr19:44,533,965...44,554,799 		JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126 		JBrowse link
G SOCS4 suppressor of cytokine signaling 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:35,614,238...35,636,531
Ensembl chr14:53,904,783...53,906,105 		JBrowse link
G SOCS5 suppressor of cytokine signaling 5 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr2A:46,813,589...46,878,102
Ensembl chr2A:47,804,431...47,806,041 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:694,414...696,682 JBrowse link
G SUMO1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chr2B:89,461,773...89,493,879
Ensembl chr2B:207,613,654...207,645,590 		JBrowse link
G SUMO2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chr17:69,115,433...69,130,065 JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323 		JBrowse link
G TRIB1 tribbles pseudokinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:122,115,194...122,123,319
Ensembl chr 8:124,867,359...124,872,924 		JBrowse link
G TRIB2 tribbles pseudokinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:12,705,043...12,730,932
Ensembl chr2A:12,847,631...12,873,499 		JBrowse link
G TRIB3 tribbles pseudokinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:583,267...605,416
Ensembl chr20:359,879...375,486 		JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 8:44,435,496...44,488,517
Ensembl chr 8:41,856,429...41,878,320 		JBrowse link
G USP5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,983,941...6,998,469
Ensembl chr12:6,895,416...6,909,936 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G ZER1 zyg-11 related cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:99,853,433...99,895,399
Ensembl chr 9:128,519,972...128,560,098 		JBrowse link
G ZFAND2A zinc finger AN1-type containing 2A acts_upstream_of_or_within ISO (PMID:16973439) MGI PMID:16973439 NCBI chr 7:1,392,979...1,401,283
Ensembl chr 7:1,518,912...1,526,107 		JBrowse link
G ZYG11B zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chr 1:51,987,678...52,087,093 JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLK3 polo like kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:44,104,564...44,110,162
Ensembl chr 1:45,470,016...45,476,021 		JBrowse link
positive regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAP31 B cell receptor associated protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,265,920...143,274,956
Ensembl chr  X:153,137,992...153,161,628 		JBrowse link
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,133,927...5,162,485
Ensembl chr 3:5,234,123...5,262,003 		JBrowse link
G EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:31,443,590...31,475,430
Ensembl chr20:32,567,799...32,598,998 		JBrowse link
proteasomal ubiquitin-independent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENC1 ectodermal-neural cortex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:40,668,899...40,682,887
Ensembl chr 5:41,281,115...41,282,884 		JBrowse link
G MIDN midnolin involved_in ISO (PMID:37616343) UniProt PMID:37616343
G NFE2L2 NFE2 like bZIP transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:64,509,446...64,544,600
Ensembl chr2B:182,214,116...182,248,085 		JBrowse link
G PSME4 proteasome activator subunit 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:54,007,224...54,113,557
Ensembl chr2A:54,919,094...55,024,551 		JBrowse link
proteasome-mediated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGAP3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 acts_upstream_of_or_within ISO (PMID:16461359) MGI PMID:16461359 NCBI chr 7:142,672,773...142,731,261
Ensembl chr 7:154,822,312...154,884,339 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15937334) Ensembl
MGI		 PMID:15937334 GO_REF:0000107 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756 		JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:46,355,026...46,556,091
Ensembl chr11:46,905,454...47,103,205 		JBrowse link
G ANKRD9 ankyrin repeat domain 9 involved_in ISO (PMID:30293565) UniProt PMID:30293565 NCBI chr14:83,122,024...83,128,173 JBrowse link
G APPBP2 amyloid beta precursor protein binding protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:54,528,229...54,611,458
Ensembl chr17:59,655,186...59,737,779 		JBrowse link
G ARMC8 armadillo repeat containing 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:135,214,895...135,328,235
Ensembl chr 3:142,665,419...142,774,903 		JBrowse link
G ARRB1 arrestin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:70,319,935...70,411,276
Ensembl chr11:73,630,276...73,654,155 		JBrowse link
G ARRB2 arrestin beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:4,766,616...4,777,253
Ensembl chr17:4,757,048...4,767,517 		JBrowse link
G ASB2 ankyrin repeat and SOCS box containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:74,566,607...74,608,905
Ensembl chr14:93,900,914...93,930,527 		JBrowse link
G ATXN3 ataxin 3 involved_in ISO (MGI:5318000|PMID:21855799) UniProt PMID:21855799 MGI:5318000 NCBI chr14:72,693,446...72,741,772 JBrowse link
G AURKA aurora kinase A acts_upstream_of ISO (PMID:17060449) MGI PMID:17060449 NCBI chr20:52,707,757...52,730,579
Ensembl chr20:53,994,881...54,017,339 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G BFAR bifunctional apoptosis regulator involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:13,558,912...13,597,023
Ensembl chr16:14,980,615...15,018,310 		JBrowse link
G BIRC2 baculoviral IAP repeat containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,298,736...97,324,966
Ensembl chr11:100,793,036...100,822,421 		JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 involved_in ISO (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chr11:13,436,580...13,547,135
Ensembl chr11:13,163,028...13,240,376 		JBrowse link
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:97,958,527...98,159,550
Ensembl chr10:101,431,318...101,632,496 		JBrowse link
G CD2AP CD2 associated protein ISO RGD PMID:15001553 RGD:1302417 NCBI chr 6:47,065,284...47,210,746
Ensembl chr 6:48,328,863...48,474,163 		JBrowse link
G CDC34 cell division cycle 34, ubiqiutin conjugating enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:592,856...602,811
Ensembl chr19:502,766...512,173 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of ISO (PMID:24949970) MGI PMID:24949970 NCBI chr16:9,887,877...10,124,500
Ensembl chr16:11,109,869...11,343,512 		JBrowse link
G CLOCK clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:68,391,310...68,509,813
Ensembl chr 4:75,018,898...75,066,726 		JBrowse link
G COP1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:151,459,354...151,727,131
Ensembl chr 1:155,156,185...155,425,156 		JBrowse link
G CRBN cereblon involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:3,091,328...3,121,364
Ensembl chr 3:3,190,979...3,225,345 		JBrowse link
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G CUL1 cullin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:140,428,442...140,531,136
Ensembl chr 7:152,908,303...153,011,254 		JBrowse link
G CUL3 cullin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20811152) Ensembl
MGI		 PMID:20811152 GO_REF:0000107 NCBI chr2B:111,714,533...111,827,080
Ensembl chr2B:230,289,195...230,378,991 		JBrowse link
G CUL4A cullin 4A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467204) Ensembl
MGI		 PMID:16467204 GO_REF:0000107 NCBI chr13:94,350,484...94,409,183
Ensembl chr13:113,428,271...113,472,701 		JBrowse link
G DCAF11 DDB1 and CUL4 associated factor 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:4,890,956...4,900,296
Ensembl chr14:23,015,680...23,024,650 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 involved_in ISO (PMID:30111536), (PMID:31492966) UniProt PMID:30111536 PMID:31492966 NCBI chr 8:100,070,628...100,098,885
Ensembl chr 8:102,226,116...102,254,900 		JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in ISO (PMID:17872950) UniProt PMID:17872950 NCBI chr12:31,406,332...31,410,293
Ensembl chr12:31,664,743...31,668,701 		JBrowse link
G DERL1 derlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:119,707,397...119,736,502
Ensembl chr 8:122,463,063...122,492,137 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:21625540) UniProt PMID:21625540 NCBI chr2B:106,536,846...106,544,430
Ensembl chr2B:225,127,967...225,135,556 		JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:187,603,600...187,672,006
Ensembl chr 1:192,466,408...192,535,071 		JBrowse link
G DTX4 deltex E3 ubiquitin ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:54,389,228...54,425,655
Ensembl chr11:57,839,228...57,874,337 		JBrowse link
G EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chr 1:160,217,526...160,281,785
Ensembl chr 1:164,372,977...164,436,977 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24914213) Ensembl
MGI		 PMID:24914213 GO_REF:0000107 NCBI chr 6:143,179,097...143,525,223 JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496 		JBrowse link
G FAF2 Fas associated factor family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:171,743,071...171,804,687
Ensembl chr 5:178,814,100...178,876,108 		JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:30190310) UniProt PMID:30190310 NCBI chr 5:103,214,110...103,739,494 JBrowse link
G FBXL19 F-box and leucine rich repeat protein 19 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22660580) MGI
Ensembl		 PMID:22660580 GO_REF:0000107 NCBI chr16:24,020,365...24,046,217
Ensembl chr16:31,290,476...31,315,169 		JBrowse link
G FBXL22 F-box and leucine rich repeat protein 22 acts_upstream_of_or_within ISO (PMID:22972877) MGI PMID:22972877 NCBI chr15:42,543,909...42,548,938
Ensembl chr15:60,837,032...60,841,829 		JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:58,219,260...58,244,780
Ensembl chr13:77,266,496...77,283,651 		JBrowse link
G FBXO22 F-box protein 22 acts_upstream_of ISO (PMID:19319192) MGI PMID:19319192 NCBI chr15:54,817,076...54,849,271
Ensembl chr15:74,410,213...74,441,609 		JBrowse link
G FBXO45 F-box protein 45 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:193,913,712...193,934,123
Ensembl chr 3:203,856,374...203,876,537 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:13,481,255...13,505,301
Ensembl chr22:31,335,423...31,359,224 		JBrowse link
G FBXO9 F-box protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:52,621,036...52,652,980
Ensembl chr 6:54,259,044...54,291,207 		JBrowse link
G FBXW11 F-box and WD repeat domain containing 11 involved_in ISO (PMID:10644755), (PMID:20347421) UniProt PMID:10644755 PMID:20347421 NCBI chr 5:167,207,643...167,354,730
Ensembl chr 5:174,124,499...174,271,977 		JBrowse link
G FBXW5 F-box and WD repeat domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,998,949...108,003,247
Ensembl chr 9:136,969,957...136,973,945 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:144,660,676...144,874,404
Ensembl chr 4:156,312,274...156,402,351 		JBrowse link
G FEM1B fem-1 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,236,920...47,254,878
Ensembl chr15:66,005,614...66,024,007 		JBrowse link
G FEM1C fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:110,878,460...110,902,650
Ensembl chr 5:116,675,163...116,699,085 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851 		JBrowse link
G GID8 GID complex subunit 8 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:59,325,193...59,335,588
Ensembl chr20:60,617,762...60,627,792 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,118,330...39,130,768
Ensembl chr19:47,710,197...47,726,948 		JBrowse link
G HECTD1 HECT domain E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:11,871,973...11,979,548
Ensembl chr14:30,070,567...30,176,915 		JBrowse link
G HECTD3 HECT domain E3 ubiquitin protein ligase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:44,306,327...44,315,131
Ensembl chr 1:45,670,302...45,678,916 		JBrowse link
G IFI27 interferon alpha inducible protein 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:74,742,775...74,748,820
Ensembl chr14:94,046,694...94,082,022 		JBrowse link
G ITCH itchy E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:30,690,172...30,840,504
Ensembl chr20:31,852,203...31,971,945 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,071,118...61,078,667
Ensembl chr11:64,404,572...64,412,667 		JBrowse link
G KBTBD6 kelch repeat and BTB domain containing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:22,329,845...22,335,301
Ensembl chr13:40,921,761...40,923,813 		JBrowse link
G KCMF1 potassium channel modulatory factor 1 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chr2A:85,026,798...85,110,088
Ensembl chr2A:86,631,673...86,662,468 		JBrowse link
G KCTD10 potassium channel tetramerization domain containing 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:107,025,380...107,054,118
Ensembl chr12:110,419,859...110,448,773 		JBrowse link
G KCTD13 potassium channel tetramerization domain containing 13 involved_in IEA TreeGrafter GO_REF:0000118
G KCTD17 potassium channel tetramerization domain containing 17 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:17,965,397...17,977,048
Ensembl chr22:35,801,379...35,813,005 		JBrowse link
G KCTD5 potassium channel tetramerization domain containing 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,542,488...1,569,044
Ensembl chr16:2,796,117...2,822,819 		JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:176,156,870...176,223,093
Ensembl chr 1:180,462,578...180,526,323 		JBrowse link
G KLHDC2 kelch domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,356,506...30,372,018
Ensembl chr14:48,668,025...48,679,105 		JBrowse link
G KLHDC3 kelch domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,606,462...42,613,565
Ensembl chr 6:43,900,902...43,908,556 		JBrowse link
G KLHL20 kelch like family member 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:149,232,858...149,303,357
Ensembl chr 1:152,937,835...153,008,239 		JBrowse link
G KLHL22 kelch like family member 22 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr22:19,122,875...19,174,842 JBrowse link
G KLHL3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:133,005,563...133,276,087
Ensembl chr 5:139,147,793...139,248,919 		JBrowse link
G KLHL40 kelch like family member 40 acts_upstream_of ISO (PMID:24960163) MGI PMID:24960163 NCBI chr 3:42,592,977...42,600,100
Ensembl chr 3:43,657,128...43,664,055 		JBrowse link
G KLHL42 kelch like family member 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:58,509,031...58,531,891
Ensembl chr12:61,127,167...61,149,126 		JBrowse link
G LOC100972383 proteasome 20S subunit alpha 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:111,776,428...111,803,827
Ensembl chr 1:111,015,365...111,031,944 		JBrowse link
G LOC100976375 melanoma antigen preferentially expressed in tumors involved_in IEA Ensembl GO_REF:0000107
G LOC100976978 E3 ubiquitin-protein ligase HERC2 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912 NCBI chr15:1,590,558...1,800,023
Ensembl chr15:25,536,483...25,746,074 		JBrowse link
G LOC100981597 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:43,451,160...43,452,331 JBrowse link
G LOC100982140 kelch repeat and BTB domain-containing protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:22,397,204...22,401,999
Ensembl chr13:40,989,363...40,991,417 		JBrowse link
G LOC100995677 26S proteasome regulatory subunit 10B-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:52,496,558...52,508,697
Ensembl chr14:51,587,467...51,608,044 		JBrowse link
G LOC129392969 DDIT3 upstream open reading frame protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr12:31,664,743...31,668,701 JBrowse link
G MAEA macrophage erythroblast attacher, E3 ubiquitin ligase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:1,432,848...1,485,764
Ensembl chr 4:1,315,810...1,366,448 		JBrowse link
G MARCHF6 membrane associated ring-CH-type finger 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:10,666,978...10,753,050
Ensembl chr 5:10,524,958...10,608,046 		JBrowse link
G MTA1 metastasis associated 1 involved_in ISO (PMID:19805145) UniProt PMID:19805145 NCBI chr14:86,058,412...86,111,736 JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19386237) Ensembl
MGI		 PMID:19386237 GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242 		JBrowse link
G NEDD4L NEDD4 like E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,428,077...51,792,995
Ensembl chr18:54,867,149...55,123,423 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:64,509,446...64,544,600
Ensembl chr2B:182,214,116...182,248,085 		JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24914213) Ensembl
MGI
TreeGrafter		 PMID:24914213 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:17,969,146...17,970,962
Ensembl chr 6:18,321,728...18,322,915 		JBrowse link
G NHLRC3 NHL repeat containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:20,249,985...20,261,803
Ensembl chr13:38,838,524...38,850,328 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:1,597,171...1,622,708
Ensembl chr20:1,364,008...1,389,548 		JBrowse link
G OTUD5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chr  X:41,219,536...41,256,219 JBrowse link
G PBK PDZ binding kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chr 8:27,084,789...27,112,986
Ensembl chr 8:24,285,395...24,313,658 		JBrowse link
G PCBP2 poly(rC) binding protein 2 involved_in ISO (PMID:19881509) UniProt PMID:19881509 NCBI chr12:35,273,540...35,301,292
Ensembl chr12:36,058,463...36,082,672 		JBrowse link
G PCNP PEST proteolytic signal containing nuclear protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:98,683,411...98,703,664
Ensembl chr 3:105,362,954...105,383,051 		JBrowse link
G PELI1 pellino E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:64,160,362...64,213,200
Ensembl chr2A:65,284,480...65,336,339 		JBrowse link
G PJA2 praja ring finger ubiquitin ligase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:104,688,464...104,759,669
Ensembl chr 5:110,497,245...110,541,354 		JBrowse link
G PLAA phospholipase A2 activating protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:26,749,607...26,793,580
Ensembl chr 9:27,357,437...27,401,103 		JBrowse link
G PML PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883 		JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:15748170) MGI PMID:15748170 NCBI chr17:36,389,549...36,425,161
Ensembl chr17:41,038,302...41,073,872 		JBrowse link
G PPP2CB protein phosphatase 2 catalytic subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16717086) Ensembl
MGI		 PMID:16717086 GO_REF:0000107 NCBI chr 8:30,099,605...30,126,917
Ensembl chr 8:27,288,263...27,302,606 		JBrowse link
G PPP2R5C protein phosphatase 2 regulatory subunit B'gamma acts_upstream_of_or_within ISO (PMID:16717086) MGI PMID:16717086 NCBI chr14:82,383,086...82,549,822
Ensembl chr14:102,206,396...102,372,978 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G PSMB3 proteasome 20S subunit beta 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:18,509,375...18,526,743
Ensembl chr17:18,783,757...18,796,011 		JBrowse link
G PSMB5 proteasome 20S subunit beta 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15198663) Ensembl
MGI		 PMID:15198663 GO_REF:0000107 NCBI chr14:3,845,951...3,855,335
Ensembl chr14:21,943,432...21,952,169 		JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:70,873,846...70,889,988
Ensembl chr14:90,225,405...90,241,641 		JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:95,338,743...95,359,353
Ensembl chr 7:108,083,203...108,103,494 		JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:47,366,986...47,374,677
Ensembl chr11:47,920,295...47,927,654 		JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:37,018,112...37,028,490
Ensembl chr19:45,533,141...45,543,245 		JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:57,906,934...57,911,551
Ensembl chr17:63,051,050...63,055,907 		JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:33,303,689...33,324,502
Ensembl chr14:51,587,467...51,608,044 		JBrowse link
G PSMD1 proteasome 26S subunit, non-ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:118,313,158...118,428,636
Ensembl chr2B:237,102,623...237,215,322 		JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:48,602,395...48,705,229
Ensembl chr2B:165,972,229...166,074,879 		JBrowse link
G PSMD2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:181,336,634...181,346,471
Ensembl chr 3:189,818,655...189,828,596 		JBrowse link
G PSMD4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:126,603,753...126,616,553
Ensembl chr 1:130,251,323...130,264,256 		JBrowse link
G PSMD6 proteasome 26S subunit, non-ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:63,912,457...63,925,443
Ensembl chr 3:65,291,696...65,304,861 		JBrowse link
G PSMD7 proteasome 26S subunit, non-ATPase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:50,690,418...50,699,924
Ensembl chr16:74,140,338...74,149,833 		JBrowse link
G PSMD8 proteasome 26S subunit, non-ATPase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:35,468,519...35,477,802
Ensembl chr19:44,040,252...44,049,265 		JBrowse link
G PSMF1 proteasome inhibitor subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:1,275,662...1,325,410
Ensembl chr20:1,043,513...1,092,237 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr19:12,508,232...12,516,068
Ensembl chr19:13,250,718...13,258,482 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 9:78,433,461...78,482,157
Ensembl chr 9:106,622,377...106,670,317 		JBrowse link
G RBCK1 RANBP2-type and C3HC4-type zinc finger containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:615,987...639,366
Ensembl chr20:386,569...409,580 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:21,696,808...21,779,878
Ensembl chr17:22,035,643...22,069,546 		JBrowse link
G RHOBTB3 Rho related BTB domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:19,552,740...19,618,055
Ensembl chr 5:19,698,304...19,763,363 		JBrowse link
G RMND5A required for meiotic nuclear division 5 homolog A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr2A:86,768,106...86,826,000
Ensembl chr2A:88,312,091...88,369,849 		JBrowse link
G RMND5B required for meiotic nuclear division 5 homolog B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:173,290,007...173,307,663
Ensembl chr 5:180,548,381...180,565,094 		JBrowse link
G RNF122 ring finger protein 122 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:32,862,364...32,881,660
Ensembl chr 8:30,049,204...30,068,355 		JBrowse link
G RNF126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:491,699...494,175
Ensembl chr19:614,236...618,659 		JBrowse link
G RNF170 ring finger protein 170 acts_upstream_of_or_within ISO (PMID:31076723) MGI PMID:31076723 NCBI chr 8:42,097,900...42,145,327
Ensembl chr 8:39,541,479...39,588,163 		JBrowse link
G RNF186 ring finger protein 186 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:18,770,083...18,772,399
Ensembl chr 1:19,813,784...19,814,467 		JBrowse link
G RNF187 ring finger protein 187 involved_in ISO (PMID:20852630) UniProt PMID:20852630 NCBI chr 1:203,889,146...203,896,884
Ensembl chr 1:209,070,822...209,071,202
Ensembl chr 1:209,070,822...209,071,202 		JBrowse link
G RNF216 ring finger protein 216 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:5,872,118...6,037,073
Ensembl chr 7:5,891,909...6,051,979 		JBrowse link
G RNF34 ring finger protein 34 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:118,998,436...119,022,823
Ensembl chr12:122,373,172...122,402,693 		JBrowse link
G RNF4 ring finger protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:2,614,918...2,661,785
Ensembl chr 4:2,540,612...2,563,937 		JBrowse link
G SENP1 SUMO specific peptidase 1 acts_upstream_of ISO (PMID:17981124) MGI PMID:17981124 NCBI chr12:40,624,200...40,689,837
Ensembl chr12:41,507,348...41,558,969 		JBrowse link
G SH3BGRL SH3 domain binding glutamate rich protein like involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:70,268,591...70,367,132
Ensembl chr  X:80,372,945...80,471,646 		JBrowse link
G SHARPIN SHANK associated RH domain interactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:140,865,009...140,870,580
Ensembl chr 8:143,854,902...143,862,888 		JBrowse link
G SIAH1 siah E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,627,021...28,651,343
Ensembl chr16:47,517,594...47,522,936 		JBrowse link
G SIAH2 siah E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:147,759,375...147,781,639
Ensembl chr 3:155,332,751...155,354,139 		JBrowse link
G SIAH3 siah E3 ubiquitin protein ligase family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:27,180,382...27,255,005 JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069 		JBrowse link
G SIRT2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:35,984,453...36,005,582
Ensembl chr19:44,533,965...44,554,799 		JBrowse link
G SKP1 S-phase kinase associated protein 1 involved_in ISO (PMID:15145941), (PMID:34480022) UniProt PMID:15145941 PMID:34480022 NCBI chr 5:129,560,086...129,580,188
Ensembl chr 5:135,713,085...135,729,653 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:74,179,608...74,211,563
Ensembl chr 5:79,461,018...79,492,311 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:90,995,923...91,112,240
Ensembl chr 7:104,500,965...104,568,046 		JBrowse link
G SMURF2 SMAD specific E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:58,638,995...58,759,443
Ensembl chr17:63,731,386...63,809,298 		JBrowse link
G SPOP speckle type BTB/POZ protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20811152) Ensembl
MGI
TreeGrafter		 PMID:20811152 GO_REF:0000107 GO_REF:0000118 NCBI chr17:43,685,913...43,765,277
Ensembl chr17:48,417,634...48,440,623 		JBrowse link
G SPOPL speckle type BTB/POZ protein like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:21,280,143...21,351,547
Ensembl chr2B:142,577,019...142,648,257 		JBrowse link
G SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:8,053,596...8,132,143
Ensembl chr 1:9,349,825...9,363,624 		JBrowse link
G SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:7,002,783...7,005,365
Ensembl chr12:6,914,159...6,916,554 		JBrowse link
G SPSB3 splA/ryanodine receptor domain and SOCS box containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:399,090...405,020
Ensembl chr16:1,830,040...1,835,504 		JBrowse link
G SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:138,085,136...138,181,747
Ensembl chr 3:145,682,533...145,779,049 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr16:694,414...696,682 JBrowse link
G TBL1X transducin beta like 1 X-linked acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chr  X:2,096,684...2,352,951
Ensembl chr  X:9,525,194...9,604,290 		JBrowse link
G TBL1XR1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chr 3:174,067,964...174,251,913
Ensembl chr 3:182,247,335...182,429,619 		JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:9,791,008...9,803,894
Ensembl chr17:9,973,920...9,985,660 		JBrowse link
G TNFAIP1 TNF alpha induced protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:28,427,448...28,438,826
Ensembl chr17:28,929,788...28,941,278 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:32,314,850...32,327,067
Ensembl chr 9:33,124,730...33,135,129 		JBrowse link
G TRIM13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:31,137,236...31,153,398
Ensembl chr13:49,889,041...49,900,488 		JBrowse link
G TRIM2 tripartite motif containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:145,494,088...145,681,287
Ensembl chr 4:157,194,729...157,500,723 		JBrowse link
G TRIM26 tripartite motif containing 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:29,962,838...29,990,710
Ensembl chr 6:30,632,948...30,660,809 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:6,580,491...6,605,854
Ensembl chr11:6,264,376...6,281,033 		JBrowse link
G TRIM38 tripartite motif containing 38 acts_upstream_of_or_within ISO (PMID:22539786) MGI PMID:22539786 NCBI chr 6:25,796,278...25,818,610
Ensembl chr 6:26,454,051...26,475,842 		JBrowse link
G TRIM45 tripartite motif containing 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:85,398,904...85,409,600
Ensembl chr 1:120,394,090...120,403,622 		JBrowse link
G TRIM63 tripartite motif containing 63 acts_upstream_of_or_within ISO (PMID:15601779) MGI PMID:15601779 NCBI chr 1:25,309,949...25,373,658
Ensembl chr 1:26,378,373...26,392,041 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:32,745,217...32,824,985
Ensembl chr 3:33,050,997...33,123,910 		JBrowse link
G TRIM72 tripartite motif containing 72 acts_upstream_of_or_within ISO (PMID:23965929) MGI PMID:23965929 NCBI chr16:23,734,844...23,753,388 JBrowse link
G TRIM9 tripartite motif containing 9 involved_in ISO (PMID:20085810) UniProt PMID:20085810 NCBI chr14:31,577,859...31,844,298
Ensembl chr14:49,863,433...49,986,212 		JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:117,013,343...117,175,296
Ensembl chr2B:235,820,182...235,979,780 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:108,606,271...108,617,000
Ensembl chr  X:119,034,235...119,049,655 		JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:129,775,011...129,794,853
Ensembl chr 5:135,925,217...135,944,609 		JBrowse link
G UBE2D1 ubiquitin conjugating enzyme E2 D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:54,867,346...54,903,125
Ensembl chr10:57,087,811...57,123,581 		JBrowse link
G UBE2D3 ubiquitin conjugating enzyme E2 D3 involved_in
acts_upstream_of_or_within		 ISO (PMID:20347421)
(PMID:15601779)		 UniProt
MGI		 PMID:15601779 PMID:20347421 NCBI chr 4:95,218,319...95,293,053
Ensembl chr 4:105,883,133...105,900,546 		JBrowse link
G UBE2H ubiquitin conjugating enzyme E2 H involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23965929) Ensembl
MGI		 PMID:23965929 GO_REF:0000107 NCBI chr 7:121,796,629...121,917,981
Ensembl chr 7:134,318,166...134,437,295 		JBrowse link
G UBE2I ubiquitin conjugating enzyme E2 I ISO RGD PMID:9013644 RGD:730030 Ensembl chr16:1,367,288...1,382,575 JBrowse link
G UBE2K ubiquitin conjugating enzyme E2 K involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:34,026,942...34,111,923
Ensembl chr 4:39,877,966...39,960,397 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:35927303) UniProt PMID:35927303 NCBI chr12:90,951,446...90,984,075 JBrowse link
G UBE2U ubiquitin conjugating enzyme E2 U involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:63,458,063...63,521,812
Ensembl chr 1:65,346,777...65,410,228 		JBrowse link
G UBE2W ubiquitin conjugating enzyme E2 W involved_in ISO (MGI:5318000|PMID:21855799)
(PMID:35927303)		 UniProt PMID:21855799 PMID:35927303 MGI:5318000 NCBI chr 8:70,315,767...70,413,148 JBrowse link
G UBE3A ubiquitin protein ligase E3A involved_in ISO (MGI:6330832|PMID:30020076) UniProt PMID:30020076 MGI:6330832 NCBI chr15:4,494,029...4,595,415
Ensembl chr15:22,747,075...22,825,459 		JBrowse link
G UBE3D ubiquitin protein ligase E3D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:80,729,751...80,962,322
Ensembl chr 6:84,062,079...84,236,860 		JBrowse link
G UBE4B ubiquitination factor E4B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23509263) MGI
Ensembl		 PMID:23509263 GO_REF:0000107 NCBI chr 1:8,801,707...8,949,465
Ensembl chr 1:10,033,084...10,178,759 		JBrowse link
G UBR1 ubiquitin protein ligase E3 component n-recognin 1 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chr15:21,899,611...22,064,606
Ensembl chr15:40,060,111...40,221,725 		JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chr 6:42,150,409...42,282,486
Ensembl chr 6:43,449,154...43,579,224 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chr 1:18,032,528...18,168,954
Ensembl chr 1:19,079,779...19,215,578 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29378950) UniProt PMID:29378950 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913 		JBrowse link
G UBXN11 UBX domain protein 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:25,543,314...25,567,655
Ensembl chr 1:26,608,439...26,636,016 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:23,928,207...24,003,550
Ensembl chr2A:24,038,567...24,097,309 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:54,865,251...54,905,243
Ensembl chr 8:56,516,601...56,556,489 		JBrowse link
G UBXN7 UBX domain protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:193,699,924...193,778,452
Ensembl chr 3:203,643,126...203,719,317 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in IEA InterPro GO_REF:0000002 NCBI chr18:14,104,754...14,158,402
Ensembl chr18:17,745,733...17,797,070 		JBrowse link
G USP25 ubiquitin specific peptidase 25 involved_in IEA InterPro GO_REF:0000002 NCBI chr21:2,468,993...2,618,200
Ensembl chr21:15,724,729...15,982,182 		JBrowse link
G USP44 ubiquitin specific peptidase 44 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:93,111,293...93,146,889
Ensembl chr12:96,503,794...96,536,094 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234 		JBrowse link
G WDR26 WD repeat domain 26 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:199,853,860...199,903,474
Ensembl chr 1:204,861,784...204,914,538 		JBrowse link
G WWP1 WW domain containing E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:83,039,632...83,165,010
Ensembl chr 8:85,009,951...85,134,671 		JBrowse link
G WWP2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:50,142,402...50,322,052
Ensembl chr16:69,525,246...69,703,831 		JBrowse link
G ZFAND2A zinc finger AN1-type containing 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:1,392,979...1,401,283
Ensembl chr 7:1,518,912...1,526,107 		JBrowse link
G ZFAND2B zinc finger AN1-type containing 2B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:106,464,364...106,467,217
Ensembl chr2B:225,055,969...225,058,647 		JBrowse link
G ZNRF1 zinc and ring finger 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:55,567,875...55,679,524
Ensembl chr16:74,920,141...75,030,933 		JBrowse link
G ZNRF4 zinc and ring finger 4 involved_in ISO (PMID:28656966) UniProt PMID:28656966 NCBI chr19:4,474,001...4,475,435 JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234) UniProt PMID:33184234 NCBI chr10:70,308,480...70,324,729
Ensembl chr10:72,981,196...72,997,070 		JBrowse link
regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:37,210,170...37,221,961
Ensembl chr16:56,343,025...56,355,164 		JBrowse link
G USP19 ubiquitin specific peptidase 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,032,373...49,045,238
Ensembl chr 3:50,100,216...50,125,112 		JBrowse link
regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490 		JBrowse link
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19103752) Ensembl
MGI		 PMID:19103752 GO_REF:0000107 NCBI chr10:97,958,527...98,159,550
Ensembl chr10:101,431,318...101,632,496 		JBrowse link
G DLGAP1 DLG associated protein 1 involved_in ISO PMID:15496675 BHF-UCL PMID:15496675 RGD:8553458 NCBI chr18:9,816,171...10,781,490
Ensembl chr18:12,704,306...13,091,118 		JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:34,382,064...34,469,432
Ensembl chr15:52,711,349...52,791,281 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27107699) Ensembl
MGI		 PMID:27107699 GO_REF:0000107 NCBI chr 6:143,179,097...143,525,223 JBrowse link
G GPX1 glutathione peroxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,280,038...49,281,455
Ensembl chr 3:50,360,947...50,361,826 		JBrowse link
G LOC100972297 nuclear pore complex-interacting protein family member B6 acts_upstream_of_or_within ISO (PMID:23001567) MGI PMID:23001567 NCBI chr16:604,927...1,697,831 JBrowse link
G LOC100973071 proteasome activator complex subunit 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:93,520,158...93,520,928 JBrowse link
G NFE2L1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:29400713)
(PMID:27920251)		 MGI PMID:27920251 PMID:29400713 NCBI chr17:9,476,482...9,489,661
Ensembl chr17:9,657,847...9,671,040 		JBrowse link
G NUDT15 nudix hydrolase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,189,459...29,198,825
Ensembl chr13:47,891,557...47,900,971 		JBrowse link
G PITHD1 PITH domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31915251) Ensembl
MGI		 PMID:31915251 GO_REF:0000107 NCBI chr 1:22,970,081...22,979,841
Ensembl chr 1:23,954,980...23,964,085 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:23001567) MGI PMID:23001567 NCBI chr16:604,366...605,560 JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,657,344...13,683,864
Ensembl chr19:14,385,191...14,406,205 		JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:48,602,395...48,705,229
Ensembl chr2B:165,972,229...166,074,879 		JBrowse link
G PSME1 proteasome activator subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:4,912,390...4,915,219
Ensembl chr14:23,033,548...23,039,405 		JBrowse link
G PSME2 proteasome activator subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:4,919,628...4,922,952
Ensembl chr14:23,043,807...23,047,296 		JBrowse link
G PSME3 proteasome activator subunit 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:14,474,604...14,484,522
Ensembl chr17:14,700,660...14,711,735 		JBrowse link
G RHBDF1 rhomboid 5 homolog 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:49,031...57,222 JBrowse link
G TMF1 TATA element modulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:68,955,866...68,988,353
Ensembl chr 3:70,322,814...70,355,460 		JBrowse link
G UBB ubiquitin B acts_upstream_of_or_within ISO (PMID:17571083) MGI PMID:17571083 NCBI chr17:35,286,699...35,288,429 JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:168,471,501...168,519,366
Ensembl chr 1:172,764,606...172,811,880 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:14,104,754...14,158,402
Ensembl chr18:17,745,733...17,797,070 		JBrowse link
G USP25 ubiquitin specific peptidase 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:2,468,993...2,618,200
Ensembl chr21:15,724,729...15,982,182 		JBrowse link
regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARAF A-Raf proto-oncogene, serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:39,997,026...40,007,783
Ensembl chr  X:47,893,153...47,904,643 		JBrowse link
G COMMD1 copper metabolism domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:61,970,830...62,216,677
Ensembl chr2A:63,121,521...63,349,131 		JBrowse link
G DDA1 DET1 and DDB1 associated 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr19:16,797,750...16,808,427
Ensembl chr19:17,771,925...17,785,267 		JBrowse link
G DESI1 desumoylating isopeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:22,493,114...22,516,191
Ensembl chr22:40,578,968...40,602,094 		JBrowse link
G FOXF2 forkhead box F2 involved_in ISO (PMID:29374064) UniProt PMID:29374064 NCBI chr 6:1,209,899...1,215,970 JBrowse link
G GLMN glomulin, FKBP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22405651) MGI
Ensembl		 PMID:22405651 GO_REF:0000107 NCBI chr 1:94,907,342...94,963,052
Ensembl chr 1:93,646,499...93,701,430 		JBrowse link
G GNA12 G protein subunit alpha 12 involved_in ISO (PMID:22609986)
(MGI:5448916|PMID:22609986)		 UniProt PMID:22609986 MGI:5448916 NCBI chr 7:2,989,832...3,104,848 JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,508,232...12,516,068
Ensembl chr19:13,250,718...13,258,482 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:78,433,461...78,482,157
Ensembl chr 9:106,622,377...106,670,317 		JBrowse link
G UBE2K ubiquitin conjugating enzyme E2 K involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18710920) Ensembl
MGI		 PMID:18710920 GO_REF:0000107 NCBI chr 4:34,026,942...34,111,923
Ensembl chr 4:39,877,966...39,960,397 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:131,374,635...131,395,986
Ensembl chr 1:135,209,490...135,225,666 		JBrowse link
G UFL1 UFM1 specific ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20228063) MGI
TreeGrafter
Ensembl		 PMID:20228063 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:94,356,440...94,389,920
Ensembl chr 6:98,242,756...98,274,377 		JBrowse link
G WNT10B Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19056892) Ensembl
MGI		 PMID:19056892 GO_REF:0000107 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734 		JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:61,562,372...61,622,841
Ensembl chr2A:62,698,935...62,757,793 		JBrowse link
G ZNF416 zinc finger protein 416 involved_in ISO PMID:33249983
(MGI:6789914|PMID:33249983)		 UniProt PMID:33249983 MGI:6789914 RGD:329955556 NCBI chr19:54,583,428...54,590,792
Ensembl chr19:63,412,869...63,420,231 		JBrowse link
retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFG2A AFG2 AAA ATPase homolog A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:115,101,064...115,489,360
Ensembl chr 4:126,256,152...126,631,500 		JBrowse link
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:74,593,260...74,596,372
Ensembl chr2A:76,099,634...76,102,464 		JBrowse link
G DERL1 derlin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15215855) MGI
Ensembl		 PMID:15215855 GO_REF:0000107 NCBI chr 8:119,707,397...119,736,502
Ensembl chr 8:122,463,063...122,492,137 		JBrowse link
G DERL2 derlin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21220515) Ensembl
MGI		 PMID:21220515 GO_REF:0000107 NCBI chr17:5,519,183...5,534,145
Ensembl chr17:5,514,440...5,526,363 		JBrowse link
G ERLEC1 endoplasmic reticulum lectin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:53,930,280...53,962,178
Ensembl chr2A:54,842,228...54,874,068 		JBrowse link
G FAF2 Fas associated factor family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:171,743,071...171,804,687
Ensembl chr 5:178,814,100...178,876,108 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:37,210,170...37,221,961
Ensembl chr16:56,343,025...56,355,164 		JBrowse link
G HSP90B1 heat shock protein 90 beta family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:101,506,845...101,524,407
Ensembl chr12:104,901,997...104,919,329 		JBrowse link
G LOC100970299 ubiquitin recognition factor in ER-associated degradation protein 1-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:20,088,370...20,089,577 JBrowse link
G LOC112441188 protein transport protein Sec61 subunit beta-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:47,865,321...47,865,800 JBrowse link
G NPLOC4 NPL4 homolog, ubiquitin recognition factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:76,012,756...76,092,901
Ensembl chr17:81,713,582...81,788,714 		JBrowse link
G NVL nuclear VCP like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:199,695,388...199,798,080
Ensembl chr 1:204,704,371...204,806,959 		JBrowse link
G OS9 OS9 endoplasmic reticulum lectin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:31,205,239...31,232,769
Ensembl chr12:31,463,716...31,493,076 		JBrowse link
G SEC61B SEC61 translocon subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:70,312,061...70,320,448
Ensembl chr 9:98,431,059...98,438,914 		JBrowse link
G SEL1L SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:62,050,695...62,111,489
Ensembl chr14:81,248,441...81,309,597 		JBrowse link
G SELENOS selenoprotein S involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:79,995,678...80,002,159
Ensembl chr15:99,279,203...99,285,682 		JBrowse link
G SYVN1 synoviolin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:60,489,626...60,496,945
Ensembl chr11:63,829,138...63,834,364 		JBrowse link
G TMEM129 transmembrane protein 129, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,853,126...1,858,461
Ensembl chr 4:1,767,517...1,772,643 		JBrowse link
G UFD1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:2,209,590...2,238,449
Ensembl chr22:17,885,073...17,913,506 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
ribosome-associated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCC2 activating signal cointegrator 1 complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:10,832,102...10,881,987
Ensembl chr22:28,637,041...28,686,003 		JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:98,345,023...98,720,332
Ensembl chr 6:102,224,820...102,599,521 		JBrowse link
G LTN1 listerin E3 ubiquitin protein ligase 1 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr21:15,359,090...15,424,126
Ensembl chr21:28,749,584...28,812,734 		JBrowse link
G NEMF nuclear export mediator factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:30,372,390...30,441,660
Ensembl chr14:48,679,252...48,748,258 		JBrowse link
G RNF10 ring finger protein 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:118,117,486...118,160,341
Ensembl chr12:121,492,170...121,532,623 		JBrowse link
G TCF25 transcription factor 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:70,636,413...70,675,841
Ensembl chr16:90,298,175...90,340,048 		JBrowse link
G TRIP4 thyroid hormone receptor interactor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:43,332,107...43,400,522
Ensembl chr15:61,623,584...61,692,963 		JBrowse link
G ZNF598 zinc finger protein 598, E3 ubiquitin ligase involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chr16:694,562...706,711
Ensembl chr16:2,086,844...2,092,277 		JBrowse link
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32558204) Ensembl
MGI		 PMID:32558204 GO_REF:0000107 NCBI chr10:97,958,527...98,159,550
Ensembl chr10:101,431,318...101,632,496 		JBrowse link
G CCNF cyclin F involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,285,379...1,314,972
Ensembl chr16:2,529,371...2,556,438 		JBrowse link
G CUL1 cullin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:140,428,442...140,531,136
Ensembl chr 7:152,908,303...153,011,254 		JBrowse link
G CUL2 cullin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:35,127,771...35,210,108
Ensembl chr10:35,704,964...35,787,014 		JBrowse link
G CUL5 cullin 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:102,895,611...102,994,447
Ensembl chr11:106,371,759...106,469,989 		JBrowse link
G FBXL12 F-box and leucine rich repeat protein 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:9,362,764...9,371,547
Ensembl chr19:10,027,266...10,036,091 		JBrowse link
G FBXL13 F-box and leucine rich repeat protein 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:94,783,166...95,049,017
Ensembl chr 7:107,635,624...107,898,958 		JBrowse link
G FBXL14 F-box and leucine rich repeat protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:1,674,046...1,703,414
Ensembl chr12:1,626,802...1,655,056 		JBrowse link
G FBXL15 F-box and leucine rich repeat protein 15 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:99,022,732...99,026,623
Ensembl chr10:102,485,732...102,492,301 		JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:24035498), (PMID:27234298) UniProt PMID:24035498 PMID:27234298 NCBI chr 5:103,214,110...103,739,494 JBrowse link
G FBXL18 F-box and leucine rich repeat protein 18 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 7:5,734,703...5,770,942
Ensembl chr 7:5,751,134...5,789,134 		JBrowse link
G FBXL2 F-box and leucine rich repeat protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:33,199,436...33,308,831
Ensembl chr 3:33,501,525...33,610,039 		JBrowse link
G FBXL20 F-box and leucine rich repeat protein 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:17,885,351...18,018,891
Ensembl chr17:18,098,172...18,285,524 		JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:58,219,260...58,244,780
Ensembl chr13:77,266,496...77,283,651 		JBrowse link
G FBXL4 F-box and leucine rich repeat protein 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:96,717,103...96,790,932
Ensembl chr 6:100,599,390...100,661,249 		JBrowse link
G FBXL5 F-box and leucine rich repeat protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:10,050,909...10,107,573
Ensembl chr 4:15,348,977...15,430,631 		JBrowse link
G FBXL7 F-box and leucine rich repeat protein 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:15,804,479...16,237,326
Ensembl chr 5:15,643,846...16,075,623 		JBrowse link
G FBXL8 F-box and leucine rich repeat protein 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:47,505,627...47,510,190
Ensembl chr16:66,896,147...66,898,044 		JBrowse link
G FBXO17 F-box protein 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,041,892...36,075,757
Ensembl chr19:44,590,799...44,624,871 		JBrowse link
G FBXO2 F-box protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:10,408,853...10,415,174
Ensembl chr 1:11,626,713...11,633,171 		JBrowse link
G FBXO27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,113,773...36,133,009
Ensembl chr19:44,675,354...44,681,541 		JBrowse link
G FBXO3 F-box protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:33,713,147...33,746,730
Ensembl chr11:33,594,854...33,628,399 		JBrowse link
G FBXO31 F-box protein 31 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:67,997,481...68,053,081
Ensembl chr16:87,322,364...87,377,104 		JBrowse link
G FBXO36 F-box protein 36 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:117,174,590...117,263,324
Ensembl chr2B:235,978,710...236,066,904 		JBrowse link
G FBXO38 F-box protein 38 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:143,814,446...143,873,919
Ensembl chr 5:149,834,109...149,881,903 		JBrowse link
G FBXO4 F-box protein 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:68,336,673...68,474,481
Ensembl chr 5:73,500,850...73,517,051 		JBrowse link
G FBXO44 F-box protein 44 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:11,632,768...11,640,846 JBrowse link
G FBXO48 F-box protein 48 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr2A:68,504,304...68,509,113
Ensembl chr2A:69,627,187...69,632,218 		JBrowse link
G FBXO6 F-box protein 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:10,414,856...10,436,406
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837 		JBrowse link
G FBXO9 F-box protein 9 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:52,621,036...52,652,980
Ensembl chr 6:54,259,044...54,291,207 		JBrowse link
G FBXW11 F-box and WD repeat domain containing 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:167,207,643...167,354,730
Ensembl chr 5:174,124,499...174,271,977 		JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:98,212,907...98,297,477
Ensembl chr10:101,685,804...101,769,672 		JBrowse link
G FBXW5 F-box and WD repeat domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,998,949...108,003,247
Ensembl chr 9:136,969,957...136,973,945 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:144,660,676...144,874,404
Ensembl chr 4:156,312,274...156,402,351 		JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:176,156,870...176,223,093
Ensembl chr 1:180,462,578...180,526,323 		JBrowse link
G NCCRP1 NCCRP1, F-box associated domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,295,765...36,300,893
Ensembl chr19:44,844,711...44,848,796 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G SKP1 S-phase kinase associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:129,560,086...129,580,188
Ensembl chr 5:135,713,085...135,729,653 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:74,179,608...74,211,563
Ensembl chr 5:79,461,018...79,492,311 		JBrowse link
G WWTR1 WW domain containing transcription regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17636028) Ensembl
MGI		 PMID:17636028 GO_REF:0000107 NCBI chr 3:146,536,564...146,678,847
Ensembl chr 3:154,114,034...154,254,490 		JBrowse link
ubiquitin-dependent protein catabolic process via the C-end degron rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL2 cullin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:35,127,771...35,210,108
Ensembl chr10:35,704,964...35,787,014 		JBrowse link
G CUL4A cullin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,350,484...94,409,183
Ensembl chr13:113,428,271...113,472,701 		JBrowse link
G DCAF12 DDB1 and CUL4 associated factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:33,923,900...33,964,443
Ensembl chr 9:34,733,845...34,775,624 		JBrowse link
G FEM1A fem-1 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,811,911...3,821,373 JBrowse link
G FEM1B fem-1 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,236,920...47,254,878
Ensembl chr15:66,005,614...66,024,007 		JBrowse link
G FEM1C fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:110,878,460...110,902,650
Ensembl chr 5:116,675,163...116,699,085 		JBrowse link
G KLHDC1 kelch domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,272,009...30,334,693
Ensembl chr14:48,580,779...48,642,724 		JBrowse link
G KLHDC10 kelch domain containing 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:122,036,564...122,101,840
Ensembl chr 7:134,555,062...134,620,225 		JBrowse link
G KLHDC2 kelch domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,356,506...30,372,018
Ensembl chr14:48,668,025...48,679,105 		JBrowse link
G KLHDC3 kelch domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,606,462...42,613,565
Ensembl chr 6:43,900,902...43,908,556 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:21,845,351...21,866,627
Ensembl chr22:39,941,405...39,962,175 		JBrowse link
G TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:31,330,860...31,420,662
Ensembl chr20:32,455,536...32,545,780 		JBrowse link
ubiquitin-dependent protein catabolic process via the N-end rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBR1 ubiquitin protein ligase E3 component n-recognin 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr15:21,899,611...22,064,606
Ensembl chr15:40,060,111...40,221,725 		JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 6:42,150,409...42,282,486
Ensembl chr 6:43,449,154...43,579,224 		JBrowse link
G UBR3 ubiquitin protein ligase E3 component n-recognin 3 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr2B:57,099,882...57,366,981
Ensembl chr2B:174,564,671...174,827,776 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:38030679) UniProt PMID:38030679 NCBI chr 1:18,032,528...18,168,954
Ensembl chr 1:19,079,779...19,215,578 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16447
    metabolic process 10324
      primary metabolic process 8935
        protein metabolic process 3941
          protein catabolic process 993
            proteasomal protein catabolic process 520
              EGAD pathway 0
              ERAD pathway + 90
              negative regulation of proteasomal protein catabolic process + 62
              positive regulation of proteasomal protein catabolic process + 122
              proteasomal ubiquitin-independent protein catabolic process 4
              proteasome-mediated ubiquitin-dependent protein catabolic process + 384
              regulation of proteasomal protein catabolic process + 212
Path 2
Term Annotations click to browse term
  biological_process 16447
    metabolic process 10324
      organic substance metabolic process 9890
        organonitrogen compound metabolic process 4948
          organonitrogen compound catabolic process 1383
            protein catabolic process 993
              proteolysis involved in protein catabolic process 746
                proteasomal protein catabolic process 520
                  EGAD pathway 0
                  ERAD pathway + 90
                  negative regulation of proteasomal protein catabolic process + 62
                  positive regulation of proteasomal protein catabolic process + 122
                  proteasomal ubiquitin-independent protein catabolic process 4
                  proteasome-mediated ubiquitin-dependent protein catabolic process + 384
                  regulation of proteasomal protein catabolic process + 212
paths to the root