FBXO48 (F-box protein 48) - Rat Genome Database

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Gene: FBXO48 (F-box protein 48) Pan paniscus
Analyze
Symbol: FBXO48
Name: F-box protein 48
RGD ID: 11980969
Description: INVOLVED IN protein ubiquitination (inferred); SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 48
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21257,947,630 - 57,955,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A57,951,578 - 57,959,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A68,504,304 - 68,509,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A69,627,257 - 69,632,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A69,627,187 - 69,632,218 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FBXO48
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21257,947,630 - 57,955,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A57,951,578 - 57,959,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A68,504,304 - 68,509,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A69,627,257 - 69,632,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A69,627,187 - 69,632,218 (-)Ensemblpanpan1.1panPan2
FBXO48
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38268,459,422 - 68,467,294 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl268,459,422 - 68,467,294 (-)EnsemblGRCh38hg38GRCh38
GRCh37268,686,554 - 68,694,426 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36268,543,002 - 68,547,894 (-)NCBINCBI36Build 36hg18NCBI36
Celera268,539,478 - 68,544,370 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef268,426,348 - 68,431,240 (-)NCBIHuRef
CHM1_1268,618,820 - 68,623,712 (-)NCBICHM1_1
T2T-CHM13v2.0268,471,784 - 68,479,683 (-)NCBIT2T-CHM13v2.0
Fbxo48
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,901,225 - 16,908,516 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,901,375 - 16,904,772 (+)EnsemblGRCm39 Ensembl
GRCm381116,951,224 - 16,954,777 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,951,375 - 16,954,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371116,851,413 - 16,854,775 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,851,413 - 16,854,775 (+)NCBIMGSCv36mm8
Celera1117,325,170 - 17,328,533 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.41NCBI
Fbxo48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,582,493 - 95,583,950 (+)NCBIGRCr8
mRatBN7.21491,380,857 - 91,382,314 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1491,380,857 - 91,382,314 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1495,694,828 - 95,696,285 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01496,939,153 - 96,940,610 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01493,404,222 - 93,405,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014100,129,835 - 100,140,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14100,135,271 - 100,136,728 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014100,397,383 - 100,412,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41497,825,562 - 97,827,019 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11497,844,792 - 97,854,902 (+)NCBI
Celera1490,429,587 - 90,431,044 (+)NCBICelera
Cytogenetic Map14q22NCBI
Fbxo48
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542416,451,521 - 16,455,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542416,449,166 - 16,455,034 (+)NCBIChiLan1.0ChiLan1.0
FBXO48
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,449,168 - 67,453,540 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1067,450,934 - 67,451,855 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1067,339,076 - 67,344,119 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01068,468,500 - 68,473,590 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,470,273 - 68,471,194 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11068,151,424 - 68,156,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,449,759 - 68,454,838 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01068,745,092 - 68,750,201 (-)NCBIUU_Cfam_GSD_1.0
Fbxo48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629215,713,590 - 15,720,120 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649112,851,539 - 12,857,692 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649112,854,829 - 12,857,682 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO48
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl373,831,336 - 73,838,553 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1373,831,299 - 73,838,552 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2377,362,273 - 77,363,255 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO48
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11438,636,899 - 38,640,875 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1438,638,522 - 38,640,190 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604573,335,611 - 73,339,879 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo48
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247624,848,676 - 4,850,962 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247624,847,757 - 4,850,962 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000036948   ⟹   ENSPPAP00000014268
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A69,627,187 - 69,632,218 (-)Ensembl
RefSeq Acc Id: XM_003830917   ⟹   XP_003830965
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21257,947,630 - 57,955,220 (+)NCBI
NHGRI_mPanPan12A57,951,578 - 57,959,168 (+)NCBI
Mhudiblu_PPA_v02A68,504,304 - 68,509,113 (-)NCBI
PanPan1.12A69,627,257 - 69,632,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008956331   ⟹   XP_008954579
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21257,947,642 - 57,955,220 (+)NCBI
NHGRI_mPanPan12A57,951,590 - 57,959,168 (+)NCBI
Mhudiblu_PPA_v02A68,504,304 - 68,509,113 (-)NCBI
PanPan1.12A69,628,962 - 69,632,218 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830965 (Get FASTA)   NCBI Sequence Viewer  
  XP_008954579 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014268
  ENSPPAP00000014268.1
Reference Protein Sequences
RefSeq Acc Id: XP_003830965   ⟸   XM_003830917
- UniProtKB: A0A2R9AFG0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008954579   ⟸   XM_008956331
- UniProtKB: A0A2R9AFG0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000014268   ⟸   ENSPPAT00000036948
Protein Domains
F-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030285 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036948.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  FBXO9/FBXO48 UniProtKB/TrEMBL
KEGG Report pps:100990607 UniProtKB/TrEMBL
NCBI Gene FBXO48 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 48 UniProtKB/TrEMBL
  PTHR12874 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF81383 UniProtKB/TrEMBL
UniProt A0A2R9AFG0 ENTREZGENE, UniProtKB/TrEMBL