Fbxo48 (F-box protein 48) - Rat Genome Database

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Gene: Fbxo48 (F-box protein 48) Mus musculus
Analyze
Symbol: Fbxo48
Name: F-box protein 48
RGD ID: 1319210
MGI Page MGI
Description: Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in axial skeleton; liver; midbrain ventricular layer; and telencephalon ventricular layer. Orthologous to human FBXO48 (F-box protein 48).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A630050E13Rik; F-box only protein 48; novel F-box domain containing protein; RP23-295E4.4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,901,225 - 16,908,516 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,901,375 - 16,904,772 (+)EnsemblGRCm39 Ensembl
GRCm381116,951,224 - 16,954,777 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,951,375 - 16,954,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371116,851,413 - 16,854,775 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,851,413 - 16,854,775 (+)NCBIMGSCv36mm8
Celera1117,325,170 - 17,328,533 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Fbxo48
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,901,225 - 16,908,516 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,901,375 - 16,904,772 (+)EnsemblGRCm39 Ensembl
GRCm381116,951,224 - 16,954,777 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,951,375 - 16,954,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371116,851,413 - 16,854,775 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,851,413 - 16,854,775 (+)NCBIMGSCv36mm8
Celera1117,325,170 - 17,328,533 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.41NCBI
FBXO48
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38268,459,422 - 68,467,294 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl268,459,422 - 68,467,294 (-)EnsemblGRCh38hg38GRCh38
GRCh37268,686,554 - 68,694,426 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36268,543,002 - 68,547,894 (-)NCBINCBI36Build 36hg18NCBI36
Celera268,539,478 - 68,544,370 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef268,426,348 - 68,431,240 (-)NCBIHuRef
CHM1_1268,618,820 - 68,623,712 (-)NCBICHM1_1
T2T-CHM13v2.0268,471,784 - 68,479,683 (-)NCBIT2T-CHM13v2.0
Fbxo48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,582,493 - 95,583,950 (+)NCBIGRCr8
mRatBN7.21491,380,857 - 91,382,314 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1491,380,857 - 91,382,314 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1495,694,828 - 95,696,285 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01496,939,153 - 96,940,610 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01493,404,222 - 93,405,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014100,129,835 - 100,140,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14100,135,271 - 100,136,728 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014100,397,383 - 100,412,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41497,825,562 - 97,827,019 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11497,844,792 - 97,854,902 (+)NCBI
Celera1490,429,587 - 90,431,044 (+)NCBICelera
Cytogenetic Map14q22NCBI
Fbxo48
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542416,451,521 - 16,455,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542416,449,166 - 16,455,034 (+)NCBIChiLan1.0ChiLan1.0
FBXO48
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21257,947,630 - 57,955,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A57,951,578 - 57,959,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A68,504,304 - 68,509,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A69,627,257 - 69,632,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A69,627,187 - 69,632,218 (-)Ensemblpanpan1.1panPan2
FBXO48
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,449,168 - 67,453,540 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1067,450,934 - 67,451,855 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1067,339,076 - 67,344,119 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01068,468,500 - 68,473,590 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,470,273 - 68,471,194 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11068,151,424 - 68,156,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,449,759 - 68,454,838 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01068,745,092 - 68,750,201 (-)NCBIUU_Cfam_GSD_1.0
Fbxo48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629215,713,590 - 15,720,120 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649112,851,539 - 12,857,692 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649112,854,829 - 12,857,682 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO48
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl373,831,336 - 73,838,553 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1373,831,299 - 73,838,552 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2377,362,273 - 77,363,255 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO48
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11438,636,899 - 38,640,875 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1438,638,522 - 38,640,190 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604573,335,611 - 73,339,879 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo48
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247624,848,676 - 4,850,962 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247624,847,757 - 4,850,962 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fbxo48
190 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:73
Interacting mature miRNAs:77
Transcripts:ENSMUST00000061327, ENSMUST00000109635
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse

Markers in Region
UniSTS:493088  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381116,953,205 - 16,954,473UniSTSGRCm38
MGSCv371116,853,208 - 16,854,476UniSTSGRCm37
Celera1117,326,966 - 17,328,234UniSTS
Cytogenetic Map11A2UniSTS
UniSTS:495697  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381116,953,210 - 16,954,363UniSTSGRCm38
MGSCv371116,853,213 - 16,854,366UniSTSGRCm37
Celera1117,326,971 - 17,328,124UniSTS
Cytogenetic Map11A2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_176982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK037835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000061327   ⟹   ENSMUSP00000057901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,901,410 - 16,904,772 (+)Ensembl
GRCm38.p6 Ensembl1116,951,410 - 16,954,772 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109635   ⟹   ENSMUSP00000105263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,901,375 - 16,904,447 (+)Ensembl
GRCm38.p6 Ensembl1116,951,375 - 16,954,447 (+)Ensembl
RefSeq Acc Id: NM_001359162   ⟹   NP_001346091
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,375 - 16,904,772 (+)NCBI
GRCm381116,951,375 - 16,954,772 (+)NCBI
Sequence:
RefSeq Acc Id: NM_176982   ⟹   NP_795956
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,410 - 16,904,772 (+)NCBI
GRCm381116,951,410 - 16,954,772 (+)NCBI
MGSCv371116,851,413 - 16,854,775 (+)RGD
Celera1117,325,170 - 17,328,533 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514728   ⟹   XP_006514791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,229 - 16,908,516 (+)NCBI
GRCm381116,951,228 - 16,954,777 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514731   ⟹   XP_006514794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,227 - 16,908,516 (+)NCBI
GRCm381116,951,225 - 16,954,777 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514732   ⟹   XP_006514795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,225 - 16,908,516 (+)NCBI
GRCm381116,951,224 - 16,954,777 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243726   ⟹   XP_011242028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,231 - 16,908,516 (+)NCBI
GRCm381116,951,229 - 16,954,777 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314602   ⟹   XP_017170091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,230 - 16,908,516 (+)NCBI
GRCm381116,951,229 - 16,954,777 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314603   ⟹   XP_017170092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,228 - 16,908,516 (+)NCBI
GRCm381116,951,228 - 16,954,777 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314604   ⟹   XP_017170093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,901,230 - 16,908,516 (+)NCBI
GRCm381116,951,229 - 16,954,777 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_795956   ⟸   NM_176982
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514795   ⟸   XM_006514732
- Peptide Label: isoform X1
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514794   ⟸   XM_006514731
- Peptide Label: isoform X1
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514791   ⟸   XM_006514728
- Peptide Label: isoform X1
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242028   ⟸   XM_011243726
- Peptide Label: isoform X1
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170091   ⟸   XM_017314602
- Peptide Label: isoform X1
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170092   ⟸   XM_017314603
- Peptide Label: isoform X1
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170093   ⟸   XM_017314604
- Peptide Label: isoform X1
- UniProtKB: Q8C9J8 (UniProtKB/Swiss-Prot),   Q8CAT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001346091   ⟸   NM_001359162
- UniProtKB: Q8CAT8 (UniProtKB/Swiss-Prot),   Q8C9J8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000105263   ⟸   ENSMUST00000109635
RefSeq Acc Id: ENSMUSP00000057901   ⟸   ENSMUST00000061327
Protein Domains
F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CAT8-F1-model_v2 AlphaFold Q8CAT8 1-161 view protein structure

Promoters
RGD ID:6820928
Promoter ID:MM_KWN:6506
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B4,   Spleen
Transcripts:NM_176982,   NR_015469,   OTTMUST00000011591,   OTTMUST00000011592,   OTTMUST00000011594,   OTTMUST00000011596,   UC007IBQ.1,   UC007IBR.1,   UC007IBT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361116,850,466 - 16,851,537 (+)MPROMDB
RGD ID:8674012
Promoter ID:EPDNEW_M15037
Type:initiation region
Name:Fbxo48_1
Description:Mus musculus F-box protein 48 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381116,951,384 - 16,951,444EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442569 AgrOrtholog
Ensembl Genes ENSMUSG00000044966 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000061327 ENTREZGENE
  ENSMUST00000061327.2 UniProtKB/Swiss-Prot
  ENSMUST00000109635 ENTREZGENE
  ENSMUST00000109635.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1280.50 UniProtKB/Swiss-Prot
InterPro F-box-like_dom_sf UniProtKB/Swiss-Prot
  F-box_dom UniProtKB/Swiss-Prot
  FBXO9/FBXO48 UniProtKB/Swiss-Prot
KEGG Report mmu:319701 UniProtKB/Swiss-Prot
MGD MGI:2442569 ENTREZGENE
NCBI Gene 319701 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 48 UniProtKB/Swiss-Prot
  PTHR12874 UniProtKB/Swiss-Prot
Pfam F-box-like UniProtKB/Swiss-Prot
PhenoGen Fbxo48 PhenoGen
PROSITE FBOX UniProtKB/Swiss-Prot
SMART FBOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF81383 UniProtKB/Swiss-Prot
UniProt FBX48_MOUSE UniProtKB/Swiss-Prot
  Q8C9J8 ENTREZGENE
  Q8CAT8 ENTREZGENE
UniProt Secondary Q8C9J8 UniProtKB/Swiss-Prot