protein catabolic process - Ontology Report

Help | FTP Download | Citing RGD | Contact Us

Keyword

ONTOLOGY REPORT - ANNOTATIONS

Term:	protein catabolic process	go back to main search page
Accession:	GO:0030163	browse the term
Definition:	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Comment:	This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.
Synonyms:	exact_synonym:	protein breakdown; protein catabolism; protein degradation
	related_synonym:	pheromone catabolic process; pheromone catabolism
	xref_analog:	Wikipedia:Protein_catabolism

Rat
Mouse
Human
All
show annotations for term's descendants
Sort by:

protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Acy1	aminoacylase 1		TAS	8	111,576,888	111,581,571	RGD:1578377	RGD
G	Afg3l1	AFG3(ATPase family gene 3)-like 1 (S. cerevisiae)		IEA	19	53,794,261	53,821,667	RGD:1600115	InterPro
G	Afg3l2	AFG3 ATPase family member 3-like 2 (S. cerevisiae)		IEA	18	63,930,652	63,976,211	RGD:1600115	InterPro
G	Akt1	v-akt murine thymoma viral oncogene homolog 1		ISO	6	137,640,482	137,657,552	RGD:1624291	RGD
G	Akt1	v-akt murine thymoma viral oncogene homolog 1		IEA	6	137,640,482	137,657,552	RGD:1600115	ENSEMBL
G	Ambp	alpha-1-microglobulin/bikunin precursor		IDA	5	80,119,742	80,129,962	RGD:6904220	RGD
G	Atg7	autophagy related 7		ISO	4	150,814,706	150,992,704	RGD:1624291	RGD
G	Atg7	autophagy related 7		IEA	4	150,814,706	150,992,704	RGD:1600115	ENSEMBL
G	Axin1	axin 1		ISO	10	15,409,373	15,462,726	RGD:1624291	RGD
G	Axin1	axin 1		IEA	10	15,409,373	15,462,726	RGD:1600115	ENSEMBL
G	Btrc	beta-transducin repeat containing E3 ubiquitin protein ligase		ISO	1	250,528,730	250,693,952	RGD:1624291	RGD
G	Ctrb1	chymotrypsinogen B1		IDA	19	41,611,382	41,616,058	RGD:2303362	RGD
G	Cul2	cullin 2		ISO	17	62,701,289	62,741,344	RGD:1624291	RGD
G	Fbxo17	F-box protein 17		IEA	1	83,828,307	83,843,719	RGD:1600115	InterPro
G	Fbxo44	F-box protein 44		IEA	5	165,230,006	165,238,525	RGD:1600115	InterPro
G	Lnpep	leucyl/cystinyl aminopeptidase		ISO	1	56,063,361	56,151,257	RGD:1624291	RGD
G	LOC683077	similar to praja1, RING-H2 motif containing		IEA				RGD:1600115	ENSEMBL
G	Lonp2	lon peptidase 2, peroxisomal		IEA	19	21,785,263	21,838,495	RGD:1600115	InterPro
G	Lrsam1	leucine rich repeat and sterile alpha motif containing 1		ISO	3	11,911,191	11,951,806	RGD:1624291	RGD
G	Mdm2	p53 E3 ubiquitin protein ligase		ISO	7	56,996,694	57,020,926	RGD:1624291	RGD
G	Nccrp1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)		IEA	1	83,654,277	83,657,968	RGD:1600115	InterPro
G	Psmc1	proteasome (prosome, macropain) 26S subunit, ATPase, 1		IEA	6	124,380,976	124,393,338	RGD:1600115	InterPro
G	Psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2		IEA	4	8,704,100	8,718,351	RGD:1600115	InterPro
G	Psmc3	proteasome (prosome, macropain) 26S subunit, ATPase 3		IEA	3	75,413,567	75,418,948	RGD:1600115	InterPro
G	Psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4		IEA	1	83,151,149	83,159,464	RGD:1600115	InterPro
G	Psmc6	proteasome (prosome, macropain) 26S subunit, ATPase, 6		IEA	15	21,217,367	21,239,320	RGD:1600115	InterPro
G	Rbx1	ring-box 1, E3 ubiquitin protein ligase		ISO	7	119,794,976	119,805,104	RGD:1624291	RGD
G	Siah1a	seven in absentia 1A		ISO	19	21,717,141	21,740,751	RGD:1624291	RGD
G	Slc15a3	solute carrier family 15, member 3		NAS	1	213,341,322	213,356,103	RGD:633591	RGD
G	Traf2	Tnf receptor-associated factor 2		ISO	3	3,692,740	3,717,332	RGD:1624291	RGD
G	Traf2	Tnf receptor-associated factor 2		IEA	3	3,692,740	3,717,332	RGD:1600115	ENSEMBL
G	Trim24	tripartite motif-containing 24		ISO	4	65,490,076	65,543,305	RGD:1624291	RGD
G	Trim24	tripartite motif-containing 24		ISO	4	65,490,076	65,543,305	RGD:1624291	RGD
G	Ubr2	ubiquitin protein ligase E3 component n-recognin 2		IEA	9	9,165,363	9,247,261	RGD:1600115	InterPro
G	Uchl3	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)		ISO	15	85,628,490	85,670,420	RGD:1624291	RGD
G	Uchl3	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)		ISO	15	85,628,490	85,670,420	RGD:1624291	RGD
G	Vhl	von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase		ISO	4	149,529,396	149,536,289	RGD:1624291	RGD
G	Yme1l1	YME1-like 1 (S. cerevisiae)		IEA	17	96,758,634	96,796,686	RGD:1600115	InterPro
activation of mitotic anaphase-promoting complex activity
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Plk1	polo-like kinase 1		ISO	1	181,002,811	181,012,741	RGD:1624291	RGD
G	Plk1	polo-like kinase 1		ISS	1	181,002,811	181,012,741	RGD:1600115	UniProtKB
G	Pten	phosphatase and tensin homolog		ISO	1	236,771,027	236,837,261	RGD:1624291	RGD
G	Pten	phosphatase and tensin homolog		ISO	1	236,771,027	236,837,261	RGD:1624291	RGD
G	Pten	phosphatase and tensin homolog		IEA	1	236,771,027	236,837,261	RGD:1600115	ENSEMBL
G	Pten	phosphatase and tensin homolog		IEA	1	236,771,027	236,837,261	RGD:1600115	ENSEMBL
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Anapc10	anaphase promoting complex subunit 10		IEA	19	30,041,566	30,093,688	RGD:1600115	InterPro
G	Anapc4	anaphase promoting complex subunit 4		IEA	14	62,879,772	62,911,465	RGD:1600115	InterPro
G	Cdc20	cell division cycle 20		ISO	5	138,913,180	138,916,744	RGD:1624291	RGD
G	Cdc20	cell division cycle 20		IEA	5	138,913,180	138,916,744	RGD:1600115	ENSEMBL
G	Cdc26	cell division cycle 26		IEA	5	79,390,026	79,403,683	RGD:1600115	InterPro
G	Cdc27	cell division cycle 27		IEA	10	93,678,790	93,725,987	RGD:1600115	InterPro
G	Fzr1	fizzy/cell division cycle 20 related 1 (Drosophila)		IEA	7	9,816,491	9,829,006	RGD:1600115	ENSEMBL
G	Ube2c	ubiquitin-conjugating enzyme E2C		ISO	3	155,800,357	155,802,757	RGD:1624291	RGD
G	Ube2c	ubiquitin-conjugating enzyme E2C		IEA	3	155,800,357	155,802,757	RGD:1600115	ENSEMBL
G	Ube2s	ubiquitin-conjugating enzyme E2S		ISS	1	67,745,354	67,749,414	RGD:1600115	UniProtKB
G	Ube2s	ubiquitin-conjugating enzyme E2S		ISO	1	67,745,354	67,749,414	RGD:1624291	RGD
G	Ube2s	ubiquitin-conjugating enzyme E2S		ISO	1	67,745,354	67,749,414	RGD:1624291	RGD
cellular protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Chek2	checkpoint kinase 2		ISO	12	45,933,900	45,965,427	RGD:1624291	RGD
G	Chek2	checkpoint kinase 2		IEA	12	45,933,900	45,965,427	RGD:1600115	ENSEMBL
G	Cln8	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)		ISO	16	79,569,745	79,579,636	RGD:1624291	RGD
G	Cln8	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)		IEA	16	79,569,745	79,579,636	RGD:1600115	ENSEMBL
G	Dab2ip	DAB2 interacting protein		ISO	3	14,667,700	14,840,625	RGD:1624291	RGD
G	Dab2ip	DAB2 interacting protein		ISS	3	14,667,700	14,840,625	RGD:1600115	UniProtKB
G	Dennd3	DENN/MADD domain containing 3		IEA	7	111,218,116	111,275,479	RGD:1600115	ENSEMBL
G	Dennd3	DENN/MADD domain containing 3		ISO	7	111,218,116	111,275,479	RGD:1624291	RGD
G	Ide	insulin degrading enzyme		IDA	1	241,547,869	241,646,052	RGD:1627575	RGD
G	Ppt1	palmitoyl-protein thioesterase 1		ISO	5	142,153,498	142,173,401	RGD:1624291	RGD
G	Ppt1	palmitoyl-protein thioesterase 1		IEA	5	142,153,498	142,173,401	RGD:1600115	ENSEMBL
G	Rab12	RAB12, member RAS oncogene family		ISS				RGD:1600115	UniProtKB
G	Rab12	RAB12, member RAS oncogene family		ISO				RGD:1624291	RGD
G	Ripk1	receptor (TNFRSF)-interacting serine-threonine kinase 1		ISO	17	37,183,591	37,216,533	RGD:1624291	RGD
G	Rnf5	ring finger protein 5, E3 ubiquitin protein ligase		ISO	20	4,248,002	4,250,448	RGD:1624291	RGD
G	Siah2	siah E3 ubiquitin protein ligase 2		ISO	2	148,022,641	148,040,390	RGD:1624291	RGD
G	Ube4b	ubiquitination factor E4B		ISO	5	166,406,498	166,508,716	RGD:1624291	RGD
cleavage of lamin involved in execution phase of apoptosis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bax	Bcl2-associated X protein		IEA	1	95,933,023	95,938,176	RGD:1600115	ENSEMBL
G	Bax	Bcl2-associated X protein		ISO	1	95,933,023	95,938,176	RGD:1624291	RGD
G	Bax	Bcl2-associated X protein		ISS	1	95,933,023	95,938,176	RGD:1600115	UniProtKB
G	Gzma	granzyme A		IEA	2	44,488,295	44,500,128	RGD:1600115	ENSEMBL
G	Gzma	granzyme A		ISO	2	44,488,295	44,500,128	RGD:1624291	RGD
G	Gzmb	granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)		ISO	15	35,195,075	35,198,506	RGD:1624291	RGD
cyclin catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Cul3	cullin 3		IEA	9	79,574,062	79,634,396	RGD:1600115	ENSEMBL
G	Cul3	cullin 3		ISO	9	79,574,062	79,634,396	RGD:1624291	RGD
G	Fbxo31	F-box protein 31		ISS	19	51,836,918	51,837,223	RGD:1600115	UniProtKB
G	Fbxo31	F-box protein 31		ISO	19	51,836,918	51,837,223	RGD:1624291	RGD
G	RGD1305645	similar to RIKEN cDNA 1500015O10		ISO	9	42,931,051	42,950,605	RGD:1624291	RGD
G	RGD1305645	similar to RIKEN cDNA 1500015O10		IEA	9	42,931,051	42,950,605	RGD:1600115	ENSEMBL
G	Ube2c	ubiquitin-conjugating enzyme E2C		ISO	3	155,800,357	155,802,757	RGD:1624291	RGD
G	Ube2c	ubiquitin-conjugating enzyme E2C		IEA	3	155,800,357	155,802,757	RGD:1600115	ENSEMBL
epidermal growth factor catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Rab7a	RAB7A, member RAS oncogene family		ISO	4	122,202,685	122,220,649	RGD:1624291	RGD
G	Rab7a	RAB7A, member RAS oncogene family		IEA	4	122,202,685	122,220,649	RGD:1600115	ENSEMBL
ER-associated misfolded protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Rnf5	ring finger protein 5, E3 ubiquitin protein ligase		ISO	20	4,248,002	4,250,448	RGD:1624291	RGD
G	Rnf5	ring finger protein 5, E3 ubiquitin protein ligase		IEA	20	4,248,002	4,250,448	RGD:1600115	ENSEMBL
ER-associated protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Amfr	autocrine motility factor receptor, E3 ubiquitin protein ligase		ISO	19	11,434,553	11,467,592	RGD:1624291	RGD
G	Amfr	autocrine motility factor receptor, E3 ubiquitin protein ligase		ISO	19	11,434,553	11,467,592	RGD:1624291	RGD
G	Derl1	derlin 1		ISO	7	94,573,472	94,596,148	RGD:1624291	RGD
G	Derl3	derlin 3		ISO	20	13,163,287	13,165,848	RGD:1624291	RGD
G	Dnajb2	DnaJ (Hsp40) homolog, subfamily B, member 2		ISO	9	74,517,647	74,525,857	RGD:1624291	RGD
G	Dnajb2	DnaJ (Hsp40) homolog, subfamily B, member 2		IEA	9	74,517,647	74,525,857	RGD:1600115	ENSEMBL
G	Dnajb9	DnaJ (Hsp40) homolog, subfamily B, member 9		ISO	6	63,583,033	63,587,247	RGD:1624291	RGD
G	Dnajb9	DnaJ (Hsp40) homolog, subfamily B, member 9		IEA	6	63,583,033	63,587,247	RGD:1600115	ENSEMBL
G	Dnajc10	DnaJ (Hsp40) homolog, subfamily C, member 10		ISO	3	63,145,016	63,185,201	RGD:1624291	RGD
G	Dnajc10	DnaJ (Hsp40) homolog, subfamily C, member 10		ISO	3	63,145,016	63,185,201	RGD:1624291	RGD
G	Dnajc10	DnaJ (Hsp40) homolog, subfamily C, member 10		IEA	3	63,145,016	63,185,201	RGD:1600115	ENSEMBL
G	Dnajc10	DnaJ (Hsp40) homolog, subfamily C, member 10		IEA	3	63,145,016	63,185,201	RGD:1600115	ENSEMBL
G	Edem1	ER degradation enhancer, mannosidase alpha-like 1		ISO	4	144,349,966	144,379,501	RGD:1624291	RGD
G	Edem1	ER degradation enhancer, mannosidase alpha-like 1		IEA	4	144,349,966	144,379,501	RGD:1600115	ENSEMBL
G	Erlin1	ER lipid raft associated 1		ISO	1	249,161,437	249,196,760	RGD:1624291	RGD
G	Erlin1	ER lipid raft associated 1		IEA	1	249,161,437	249,196,760	RGD:1600115	ENSEMBL
G	Erlin2	ER lipid raft associated 2		ISO	16	69,345,708	69,360,849	RGD:1624291	RGD
G	Erlin2	ER lipid raft associated 2		IEA	16	69,345,708	69,360,849	RGD:1600115	ENSEMBL
G	Fbxo2	F-box protein 2		ISO	5	165,239,080	165,244,509	RGD:1624291	RGD
G	Fbxo2	F-box protein 2		IEA	5	165,239,080	165,244,509	RGD:1600115	ENSEMBL
G	Fbxo6	F-box protein 6		ISO	5	165,223,009	165,226,420	RGD:1624291	RGD
G	Fbxo6	F-box protein 6		ISS	5	165,223,009	165,226,420	RGD:1600115	UniProtKB
G	Foxred2	FAD-dependent oxidoreductase domain containing 2		IEA	7	115,861,724	115,874,209	RGD:1600115	ENSEMBL
G	Foxred2	FAD-dependent oxidoreductase domain containing 2		ISO	7	115,861,724	115,874,209	RGD:1624291	RGD
G	Hsp90b1	heat shock protein 90, beta, member 1		ISO	7	23,332,986	23,347,525	RGD:1624291	RGD
G	Hsp90b1	heat shock protein 90, beta, member 1		ISS	7	23,332,986	23,347,525	RGD:1600115	UniProtKB
G	Jkamp	JNK1/MAPK8-associated membrane protein		ISO	6	94,281,853	94,295,840	RGD:1624291	RGD
G	LOC100910823	derlin-2-like		IEA				RGD:1600115	ENSEMBL
G	LOC100910831	E3 ubiquitin-protein ligase synoviolin-like		IEA				RGD:1600115	ENSEMBL
G	Man1b1	mannosidase, alpha, class 1B, member 1		ISO	3	3,493,476	3,514,884	RGD:1624291	RGD
G	Man1b1	mannosidase, alpha, class 1B, member 1		IEA	3	3,493,476	3,514,884	RGD:1600115	ENSEMBL
G	Man1b1	mannosidase, alpha, class 1B, member 1		ISO	3	3,493,476	3,514,884	RGD:1624291	RGD
G	Os9	osteosarcoma amplified 9		ISO	7	67,046,802	67,073,355	RGD:1624291	RGD
G	Os9	osteosarcoma amplified 9		ISO	7	67,046,802	67,073,355	RGD:1624291	RGD
G	Os9	osteosarcoma amplified 9		ISO	7	67,046,802	67,073,355	RGD:1624291	RGD
G	Os9	osteosarcoma amplified 9		ISS	7	67,046,802	67,073,355	RGD:1600115	UniProtKB
G	Rhbdd1	rhomboid domain containing 1		ISO	9	81,685,464	81,778,714	RGD:1624291	RGD
G	Rhbdd1	rhomboid domain containing 1		ISS	9	81,685,464	81,778,714	RGD:1600115	UniProtKB
G	Rnf103	ring finger protein 103		ISO	4	104,762,184	104,778,157	RGD:1624291	RGD
G	Rnf103	ring finger protein 103		IEA	4	104,762,184	104,778,157	RGD:1600115	ENSEMBL
G	Sec61b	Sec61 beta subunit		ISO	5	64,096,869	64,105,082	RGD:1624291	RGD
G	Sec61b	Sec61 beta subunit		IEA	5	64,096,869	64,105,082	RGD:1600115	ENSEMBL
G	Stt3b	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)		IEA	8	119,680,704	119,747,784	RGD:1600115	ENSEMBL
G	Stt3b	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)		ISO	8	119,680,704	119,747,784	RGD:1624291	RGD
G	Syvn1	synovial apoptosis inhibitor 1, synoviolin		ISO	1	208,684,460	208,690,978	RGD:1624291	RGD
G	Syvn1	synovial apoptosis inhibitor 1, synoviolin		ISO	1	208,684,460	208,690,978	RGD:1624291	RGD
G	Tmem67	transmembrane protein 67		ISO	5	26,324,625	26,377,531	RGD:1624291	RGD
G	Tmem67	transmembrane protein 67		IEA	5	26,324,625	26,377,531	RGD:1600115	ENSEMBL
G	Trim13	tripartite motif-containing 13		ISO	15	40,743,520	40,752,138	RGD:1624291	RGD
G	Trim13	tripartite motif-containing 13		IEA	15	40,743,520	40,752,138	RGD:1600115	ENSEMBL
G	Ube2g2	ubiquitin-conjugating enzyme E2G 2		ISO	20	11,367,545	11,389,283	RGD:1624291	RGD
G	Ube2g2	ubiquitin-conjugating enzyme E2G 2		IEA	20	11,367,545	11,389,283	RGD:1600115	ENSEMBL
G	Ube2g2	ubiquitin-conjugating enzyme E2G 2		ISO	20	11,367,545	11,389,283	RGD:1624291	RGD
G	Usp19	ubiquitin specific peptidase 19		ISO				RGD:1624291	RGD
G	Usp19	ubiquitin specific peptidase 19		ISS				RGD:1600115	UniProtKB
G	Vcp	valosin-containing protein		ISS	5	59,472,100	59,491,508	RGD:1600115	UniProtKB
G	Vcp	valosin-containing protein		ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
G	Vimp	VCP-interacting membrane protein		ISO	1	120,509,100	120,518,867	RGD:1624291	RGD
G	Vimp	VCP-interacting membrane protein		IEA	1	120,509,100	120,518,867	RGD:1600115	ENSEMBL
G	Wfs1	Wolfram syndrome 1 (wolframin)		ISO	14	79,379,680	79,404,003	RGD:1624291	RGD
G	Yod1	YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)		ISO	13	43,653,274	43,654,991	RGD:1624291	RGD
G	Yod1	YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)		ISS	13	43,653,274	43,654,991	RGD:1600115	UniProtKB
glycoprotein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Adamts4	ADAM metallopeptidase with thrombospondin type 1 motif, 4		TAS	13	87,142,442	87,151,783	RGD:704367	RGD
G	Edem3	ER degradation enhancer, mannosidase alpha-like 3		ISO	13	66,653,931	66,712,432	RGD:1624291	RGD
G	Fbxo2	F-box protein 2		ISO	5	165,239,080	165,244,509	RGD:1624291	RGD
G	Fbxo2	F-box protein 2		ISO	5	165,239,080	165,244,509	RGD:1624291	RGD
G	Fbxo2	F-box protein 2		IEA	5	165,239,080	165,244,509	RGD:1600115	ENSEMBL
G	Fbxo6	F-box protein 6		ISO	5	165,223,009	165,226,420	RGD:1624291	RGD
G	Fbxo6	F-box protein 6		IEA	5	165,223,009	165,226,420	RGD:1600115	ENSEMBL
G	Manba	mannosidase, beta A, lysosomal		ISO	2	232,983,989	233,077,788	RGD:1624291	RGD
G	Manba	mannosidase, beta A, lysosomal		IEA	2	232,983,989	233,077,788	RGD:1600115	ENSEMBL
G	Ngly1	N-glycanase 1		ISO	15	10,704,196	10,750,564	RGD:1624291	RGD
G	Ngly1	N-glycanase 1		ISO	15	10,704,196	10,750,564	RGD:1624291	RGD
G	Ngly1	N-glycanase 1		ISS	15	10,704,196	10,750,564	RGD:1600115	UniProtKB
G	Stt3b	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)		IEA	8	119,680,704	119,747,784	RGD:1600115	ENSEMBL
G	Stt3b	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)		ISO	8	119,680,704	119,747,784	RGD:1624291	RGD
heparan sulfate proteoglycan catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Gpc1	glypican 1		ISO				RGD:1624291	RGD
G	Gpc1	glypican 1		ISS				RGD:1600115	UniProtKB
G	Gpc1	glypican 1		IEA				RGD:1600115	ENSEMBL
G	Hpse	heparanase		IEA	14	10,144,322	10,185,115	RGD:1600115	ENSEMBL
G	Hpse	heparanase		ISO	14	10,144,322	10,185,115	RGD:1624291	RGD
G	Hpse	heparanase		ISS	14	10,144,322	10,185,115	RGD:1600115	UniProtKB
inhibition of mitotic anaphase-promoting complex activity
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Fbxo5	F-box protein 5		IEA	1	36,492,134	36,498,503	RGD:1600115	ENSEMBL
G	Fbxo5	F-box protein 5		ISO	1	36,492,134	36,498,503	RGD:1624291	RGD
lipoprotein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apob	apolipoprotein B		ISO	6	31,508,060	31,548,083	RGD:1624291	RGD
G	Apob	apolipoprotein B		IEA	6	31,508,060	31,548,083	RGD:1600115	ENSEMBL
G	Apoe	apolipoprotein E		ISO	1	79,003,634	79,006,387	RGD:1624291	RGD
G	Apoe	apolipoprotein E		IEA	1	79,003,634	79,006,387	RGD:1600115	ENSEMBL
G	Atm	ataxia telangiectasia mutated		ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated		IEA	8	56,894,746	56,996,565	RGD:1600115	ENSEMBL
G	Ldlr	low density lipoprotein receptor		ISO	8	20,824,040	20,846,920	RGD:1624291	RGD
G	Ldlr	low density lipoprotein receptor		ISO	8	20,824,040	20,846,920	RGD:1624291	RGD
G	Ldlr	low density lipoprotein receptor		ISO	8	20,824,040	20,846,920	RGD:1624291	RGD
G	Ldlr	low density lipoprotein receptor		IEA	8	20,824,040	20,846,920	RGD:1600115	ENSEMBL
low-density lipoprotein particle receptor catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Pcsk9	proprotein convertase subtilisin/kexin type 9		ISO	5	127,501,476	127,524,289	RGD:1624291	RGD
G	Pcsk9	proprotein convertase subtilisin/kexin type 9		ISO	5	127,501,476	127,524,289	RGD:1624291	RGD
G	Pcsk9	proprotein convertase subtilisin/kexin type 9		ISS	5	127,501,476	127,524,289	RGD:629554	HGNC
G	Pcsk9	proprotein convertase subtilisin/kexin type 9		ISS	5	127,501,476	127,524,289	RGD:1600115	UniProtKB
misfolded or incompletely synthesized protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Atxn3	ataxin 3		ISO	6	126,196,043	126,229,844	RGD:1624291	RGD
G	Atxn3	ataxin 3		ISS	6	126,196,043	126,229,844	RGD:1600115	UniProtKB
G	Hdac6	histone deacetylase 6		ISO	X	26,585,852	26,606,999	RGD:1624291	RGD
G	LOC682704	similar to CG7220-PA, isoform A		ISS				RGD:1600115	UniProtKB
G	Lonp1	lon peptidase 1, mitochondrial		IBA				RGD:1600115	RefGenome
G	Lonp2	lon peptidase 2, peroxisomal		IBA	19	21,785,263	21,838,495	RGD:1600115	RefGenome
G	Oma1	zinc metallopeptidase homolog (S. cerevisiae)		ISS	5	124,261,197	124,314,715	RGD:1600115	UniProtKB
G	Oma1	zinc metallopeptidase homolog (S. cerevisiae)		ISO	5	124,261,197	124,314,715	RGD:1624291	RGD
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		ISO	10	15,096,150	15,098,431	RGD:1624291	RGD
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		IEA	10	15,096,150	15,098,431	RGD:1600115	ENSEMBL
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		IEA	10	15,096,150	15,098,431	RGD:1600115	ENSEMBL
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		ISO	10	15,096,150	15,098,431	RGD:1624291	RGD
G	Ube2w	ubiquitin-conjugating enzyme E2W		ISO				RGD:1624291	RGD
G	Yme1l1	YME1-like 1 (S. cerevisiae)		ISO	17	96,758,634	96,796,686	RGD:1624291	RGD
G	Yme1l1	YME1-like 1 (S. cerevisiae)		ISS	17	96,758,634	96,796,686	RGD:1600115	UniProtKB
mitochondrial protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bnip3	BCL2/adenovirus E1B interacting protein 3		ISO	1	198,683,009	198,700,075	RGD:1624291	RGD
G	Bnip3	BCL2/adenovirus E1B interacting protein 3		IEA	1	198,683,009	198,700,075	RGD:1600115	ENSEMBL
G	Bnip3l	BCL2/adenovirus E1B interacting protein 3-like		ISO	15	46,516,626	46,539,756	RGD:1624291	RGD
G	Spata18	spermatogenesis associated 18		ISO	14	36,928,255	36,954,960	RGD:1624291	RGD
G	Spata18	spermatogenesis associated 18		ISO	14	36,928,255	36,954,960	RGD:1624291	RGD
G	Spata18	spermatogenesis associated 18		ISS	14	36,928,255	36,954,960	RGD:1600115	UniProtKB
modification-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Chfr	checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase		ISO	12	46,651,265	46,684,689	RGD:1624291	RGD
G	Chfr	checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase		ISS	12	46,651,265	46,684,689	RGD:1600115	UniProtKB
G	Isg15	ISG15 ubiquitin-like modifier		ISO	5	173,034,479	173,035,766	RGD:1624291	RGD
G	Isg15	ISG15 ubiquitin-like modifier		IEA	5	173,034,479	173,035,766	RGD:1600115	ENSEMBL
G	Uba7	ubiquitin-like modifier activating enzyme 7		ISO	8	113,244,829	113,253,636	RGD:1624291	RGD
G	Uba7	ubiquitin-like modifier activating enzyme 7		IEA	8	113,244,829	113,253,636	RGD:1600115	ENSEMBL
G	Ube2l6	ubiquitin-conjugating enzyme E2L 6		ISO	3	68,000,239	68,016,331	RGD:1624291	RGD
G	Ube2l6	ubiquitin-conjugating enzyme E2L 6		IEA	3	68,000,239	68,016,331	RGD:1600115	ENSEMBL
multicellular organismal protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	P2rx7	purinergic receptor P2X, ligand-gated ion channel, 7		ISO	12	35,074,025	35,117,152	RGD:1624291	RGD
G	P2rx7	purinergic receptor P2X, ligand-gated ion channel, 7		IEA	12	35,074,025	35,117,152	RGD:1600115	ENSEMBL
negative regulation of cyclin catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Atraid	all-trans retinoic acid-induced differentiation factor		IEA	6	25,296,435	25,300,992	RGD:1600115	ENSEMBL
G	Atraid	all-trans retinoic acid-induced differentiation factor		ISO	6	25,296,435	25,300,992	RGD:1624291	RGD
G	Dab2ip	DAB2 interacting protein		ISO	3	14,667,700	14,840,625	RGD:1624291	RGD
G	Dab2ip	DAB2 interacting protein		ISS	3	14,667,700	14,840,625	RGD:1600115	UniProtKB
G	Nell1	NEL-like 1 (chicken)		IEA	1	99,805,922	100,758,002	RGD:1600115	ENSEMBL
G	Nell1	NEL-like 1 (chicken)		ISO	1	99,805,922	100,758,002	RGD:1624291	RGD
G	Nell1	NEL-like 1 (chicken)		ISS	1	99,805,922	100,758,002	RGD:1600115	UniProtKB
negative regulation of elastin catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Cst3	cystatin C		ISO	3	137,650,903	137,654,776	RGD:1624291	RGD
G	Cst3	cystatin C		IEA	3	137,650,903	137,654,776	RGD:1600115	ENSEMBL
negative regulation of low-density lipoprotein particle receptor catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Furin	furin (paired basic amino acid cleaving enzyme)		ISO	1	136,209,969	136,222,057	RGD:1624291	RGD
G	Furin	furin (paired basic amino acid cleaving enzyme)		IEA	1	136,209,969	136,222,057	RGD:1600115	ENSEMBL
negative regulation of membrane protein ectodomain proteolysis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Il10	interleukin 10		ISO	13	43,953,900	43,957,766	RGD:1624291	RGD
G	Il10	interleukin 10		ISS	13	43,953,900	43,957,766	RGD:1600115	UniProtKB
G	Ptpn3	protein tyrosine phosphatase, non-receptor type 3		ISO	5	75,106,880	75,222,735	RGD:1624291	RGD
G	Ptpn3	protein tyrosine phosphatase, non-receptor type 3		IEA	5	75,106,880	75,222,735	RGD:1600115	ENSEMBL
G	Timp1	TIMP metallopeptidase inhibitor 1		ISO	X	12,542,496	12,547,094	RGD:1624291	RGD
G	Timp1	TIMP metallopeptidase inhibitor 1		IEA	X	12,542,496	12,547,094	RGD:1600115	ENSEMBL
G	Timp3	TIMP metallopeptidase inhibitor 3		ISO	7	19,677,144	19,727,072	RGD:1624291	RGD
G	Timp3	TIMP metallopeptidase inhibitor 3		IEA	7	19,677,144	19,727,072	RGD:1600115	ENSEMBL
negative regulation of mitotic anaphase-promoting complex activity
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Mad2l1	MAD2 mitotic arrest deficient-like 1 (yeast)		ISO	4	96,380,039	96,386,042	RGD:1624291	RGD
G	Mad2l1	MAD2 mitotic arrest deficient-like 1 (yeast)		IEA	4	96,380,039	96,386,042	RGD:1600115	ENSEMBL
G	Mad2l2	MAD2 mitotic arrest deficient-like 2 (yeast)		ISS	5	165,218,362	165,222,828	RGD:1600115	UniProtKB
G	Usp44	ubiquitin specific peptidase 44		IEA	7	30,898,472	30,971,342	RGD:1600115	ENSEMBL
negative regulation of proteasomal protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Gabarapl2	GABA(A) receptor-associated protein like 2		ISO	19	41,880,238	41,891,074	RGD:1624291	RGD
negative regulation of proteasomal ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bag6	BCL2-associated athanogene 6		ISO	20	3,739,593	3,752,311	RGD:1624291	RGD
G	Bag6	BCL2-associated athanogene 6		ISS	20	3,739,593	3,752,311	RGD:1600115	UniProtKB
G	Fhit	fragile histidine triad		ISO	15	15,823,461	17,329,184	RGD:1624291	RGD
G	Fhit	fragile histidine triad		ISS	15	15,823,461	17,329,184	RGD:1600115	UniProtKB
G	Gipc1	GIPC PDZ domain containing family, member 1		ISO	19	26,165,658	26,177,206	RGD:1624291	RGD
G	Gipc1	GIPC PDZ domain containing family, member 1		IEA	19	26,165,658	26,177,206	RGD:1600115	ENSEMBL
G	Hsp90ab1	heat shock protein 90 alpha (cytosolic), class B member 1		ISO	9	11,033,496	11,038,868	RGD:1624291	RGD
G	Hsp90ab1	heat shock protein 90 alpha (cytosolic), class B member 1		IEA	9	11,033,496	11,038,868	RGD:1600115	ENSEMBL
G	N4bp1	Nedd4 binding protein 1		ISO	19	21,560,480	21,607,541	RGD:1624291	RGD
G	N4bp1	Nedd4 binding protein 1		IEA	19	21,560,480	21,607,541	RGD:1600115	ENSEMBL
G	Senp1	SUMO1/sentrin specific peptidase 1		IEA	7	136,746,791	136,808,933	RGD:1600115	ENSEMBL
G	Senp1	SUMO1/sentrin specific peptidase 1		ISO	7	136,746,791	136,808,933	RGD:1624291	RGD
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		IEA	4	2,200,504	2,209,657	RGD:1600115	ENSEMBL
G	Taf9	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor		ISO	2	31,454,557	31,466,611	RGD:1624291	RGD
G	Tlk2	tousled-like kinase 2		IEA	10	94,583,881	94,675,624	RGD:1600115	ENSEMBL
G	Tlk2	tousled-like kinase 2		ISO	10	94,583,881	94,675,624	RGD:1624291	RGD
G	Ubxn1	UBX domain protein 1		ISO	1	211,541,002	211,544,682	RGD:1624291	RGD
G	Ubxn1	UBX domain protein 1		ISS	1	211,541,002	211,544,682	RGD:1600115	UniProtKB
negative regulation of protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2		ISO	7	67,031,300	67,043,909	RGD:1624291	RGD
G	Banp	Btg3 associated nuclear protein		ISO	19	52,193,660	52,268,521	RGD:1624291	RGD
G	Banp	Btg3 associated nuclear protein		IEA	19	52,193,660	52,268,521	RGD:1600115	ENSEMBL
G	Dedd	death effector domain-containing		ISO	13	87,238,315	87,241,703	RGD:1624291	RGD
G	Dedd	death effector domain-containing		IEA	13	87,238,315	87,241,703	RGD:1600115	ENSEMBL
G	Egfr	epidermal growth factor receptor		ISO	14	97,617,358	97,788,211	RGD:1624291	RGD
G	Egfr	epidermal growth factor receptor		IEA	14	97,617,358	97,788,211	RGD:1600115	ENSEMBL
G	Fbxo43	F-box protein 43		ISO	7	71,670,329	71,683,901	RGD:1624291	RGD
G	Fbxo43	F-box protein 43		IEA	7	71,670,329	71,683,901	RGD:1600115	ENSEMBL
G	Flna	filamin A, alpha		ISO	X	160,362,334	160,385,626	RGD:1624291	RGD
G	Flna	filamin A, alpha		IEA	X	160,362,334	160,385,626	RGD:1600115	ENSEMBL
G	Fyn	FYN oncogene related to SRC, FGR, YES		ISO	20	43,501,853	43,695,567	RGD:1624291	RGD
G	Fyn	FYN oncogene related to SRC, FGR, YES		IEA	20	43,501,853	43,695,567	RGD:1600115	ENSEMBL
G	Grin2a	glutamate receptor, ionotropic, N-methyl D-aspartate 2A		ISO	10	5,588,229	6,004,780	RGD:1624291	RGD
G	Grin2a	glutamate receptor, ionotropic, N-methyl D-aspartate 2A		IEA	10	5,588,229	6,004,780	RGD:1600115	ENSEMBL
G	Grin2c	glutamate receptor, ionotropic, N-methyl D-aspartate 2C		ISO	10	105,323,371	105,340,976	RGD:1624291	RGD
G	Grin2c	glutamate receptor, ionotropic, N-methyl D-aspartate 2C		IEA	10	105,323,371	105,340,976	RGD:1600115	ENSEMBL
G	Ins2	insulin 2		ISO	1	202,935,548	202,936,379	RGD:1624291	RGD
G	Irak3	interleukin-1 receptor-associated kinase 3		ISO	7	59,408,198	59,467,821	RGD:1624291	RGD
G	Irak3	interleukin-1 receptor-associated kinase 3		IEA	7	59,408,198	59,467,821	RGD:1600115	ENSEMBL
G	Irak3	interleukin-1 receptor-associated kinase 3		ISO	7	59,408,198	59,467,821	RGD:1624291	RGD
G	Irak3	interleukin-1 receptor-associated kinase 3		ISO	7	59,408,198	59,467,821	RGD:1624291	RGD
G	Mad2l1	MAD2 mitotic arrest deficient-like 1 (yeast)		ISO	4	96,380,039	96,386,042	RGD:1624291	RGD
G	Mad2l2	MAD2 mitotic arrest deficient-like 2 (yeast)		ISS	5	165,218,362	165,222,828	RGD:1600115	UniProtKB
G	Mdm4	Mdm4 p53 binding protein homolog (mouse)		ISO	13	45,895,832	45,931,421	RGD:1624291	RGD
G	Mdm4	Mdm4 p53 binding protein homolog (mouse)		IEA	13	45,895,832	45,931,421	RGD:1600115	ENSEMBL
G	Nos2	nitric oxide synthase 2, inducible		ISO	10	65,036,884	65,072,453	RGD:1624291	RGD
G	Nrg1	neuregulin 1		ISO	16	63,937,796	64,126,183	RGD:1624291	RGD
G	Nrg1	neuregulin 1		IEA	16	63,937,796	64,126,183	RGD:1600115	ENSEMBL
G	Prkcg	protein kinase C, gamma		ISO	1	64,145,749	64,172,712	RGD:1624291	RGD
G	Prkcg	protein kinase C, gamma		IEA	1	64,145,749	64,172,712	RGD:1600115	ENSEMBL
G	Rela	v-rel reticuloendotheliosis viral oncogene homolog A (avian)		ISO	1	208,262,669	208,273,148	RGD:1624291	RGD
G	Rela	v-rel reticuloendotheliosis viral oncogene homolog A (avian)		IEA	1	208,262,669	208,273,148	RGD:1600115	ENSEMBL
G	Serpine2	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2		ISO	9	79,091,414	79,166,330	RGD:1624291	RGD
G	Serpine2	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2		ISO	9	79,091,414	79,166,330	RGD:1624291	RGD
G	Serpine2	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2		IEA	9	79,091,414	79,166,330	RGD:1600115	ENSEMBL
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Smad3	SMAD family member 3		ISO	8	67,803,909	67,952,056	RGD:1624291	RGD
G	Smad3	SMAD family member 3		IEA	8	67,803,909	67,952,056	RGD:1600115	ENSEMBL
G	Smad4	SMAD family member 4		ISO	18	70,432,705	70,461,541	RGD:1624291	RGD
negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Anks1a	ankyrin repeat and sterile alpha motif domain containing 1A		ISO	20	6,121,316	6,274,822	RGD:1624291	RGD
G	Pml	promyelocytic leukemia		ISO	8	62,020,438	62,051,927	RGD:1624291	RGD
G	Psen1	presenilin 1		ISO	6	107,737,543	107,776,357	RGD:1624291	RGD
G	Psen1	presenilin 1		IEA	6	107,737,543	107,776,357	RGD:1600115	ENSEMBL
G	Psen2	presenilin 2		ISO	13	95,934,674	95,951,836	RGD:1624291	RGD
G	Sufu	suppressor of fused homolog (Drosophila)		ISO	1	251,612,377	251,708,109	RGD:1624291	RGD
G	Wnt1	wingless-type MMTV integration site family, member 1		ISO	7	137,557,836	137,561,883	RGD:1624291	RGD
G	Wnt1	wingless-type MMTV integration site family, member 1		IEA	7	137,557,836	137,561,883	RGD:1600115	ENSEMBL
positive regulation of low-density lipoprotein particle receptor catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apoe	apolipoprotein E		ISO	1	79,003,634	79,006,387	RGD:1624291	RGD
G	Apoe	apolipoprotein E		IEA	1	79,003,634	79,006,387	RGD:1600115	ENSEMBL
positive regulation of membrane protein ectodomain proteolysis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Adam8	ADAM metallopeptidase domain 8		ISO	1	199,780,772	199,791,855	RGD:1624291	RGD
G	Adam8	ADAM metallopeptidase domain 8		ISO	1	199,780,772	199,791,855	RGD:1624291	RGD
G	Adam8	ADAM metallopeptidase domain 8		ISO	1	199,780,772	199,791,855	RGD:1624291	RGD
G	Adam9	ADAM metallopeptidase domain 9		ISO	16	71,446,498	71,526,108	RGD:1624291	RGD
G	Adra2a	adrenoceptor alpha 2A		ISO				RGD:1624291	RGD
G	Adra2a	adrenoceptor alpha 2A		IEA				RGD:1600115	ENSEMBL
G	Apoe	apolipoprotein E		ISO	1	79,003,634	79,006,387	RGD:1624291	RGD
G	Apoe	apolipoprotein E		IEA	1	79,003,634	79,006,387	RGD:1600115	ENSEMBL
G	Gpld1	glycosylphosphatidylinositol specific phospholipase D1		ISO	17	47,145,567	47,188,345	RGD:1624291	RGD
G	Gpld1	glycosylphosphatidylinositol specific phospholipase D1		IEA	17	47,145,567	47,188,345	RGD:1600115	ENSEMBL
G	Gpld1	glycosylphosphatidylinositol specific phospholipase D1		ISO	17	47,145,567	47,188,345	RGD:1624291	RGD
G	Gpld1	glycosylphosphatidylinositol specific phospholipase D1		ISS	17	47,145,567	47,188,345	RGD:1600115	UniProtKB
G	Ifng	interferon gamma		ISO	7	57,621,756	57,625,792	RGD:1624291	RGD
G	Ifng	interferon gamma		IEA	7	57,621,756	57,625,792	RGD:1600115	ENSEMBL
G	Il1b	interleukin 1 beta		ISO	3	116,964,422	116,970,867	RGD:1624291	RGD
G	Il1b	interleukin 1 beta		IEA	3	116,964,422	116,970,867	RGD:1600115	ENSEMBL
G	Nrd1	nardilysin 1		ISO	5	130,345,980	130,408,734	RGD:1624291	RGD
G	Pacsin3	protein kinase C and casein kinase substrate in neurons 3		IEA	3	75,611,040	75,619,605	RGD:1600115	ENSEMBL
G	Pacsin3	protein kinase C and casein kinase substrate in neurons 3		ISO	3	75,611,040	75,619,605	RGD:1624291	RGD
G	Sh3d19	SH3 domain containing 19		IEA	2	178,045,383	178,083,708	RGD:1600115	ENSEMBL
G	Sh3d19	SH3 domain containing 19		ISO	2	178,045,383	178,083,708	RGD:1624291	RGD
G	Tnf	tumor necrosis factor		ISO	20	3,661,000	3,663,618	RGD:1624291	RGD
G	Tnf	tumor necrosis factor		IEA	20	3,661,000	3,663,618	RGD:1600115	ENSEMBL
G	Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b		ISO	5	163,666,541	163,697,484	RGD:1624291	RGD
G	Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b		IEA	5	163,666,541	163,697,484	RGD:1600115	ENSEMBL
positive regulation of proteasomal protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Dab2ip	DAB2 interacting protein		ISO	3	14,667,700	14,840,625	RGD:1624291	RGD
G	Dab2ip	DAB2 interacting protein		ISS	3	14,667,700	14,840,625	RGD:1600115	UniProtKB
G	Osbpl7	oxysterol binding protein-like 7		ISO	10	85,771,941	85,789,490	RGD:1624291	RGD
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Akt1	v-akt murine thymoma viral oncogene homolog 1		ISO	6	137,640,482	137,657,552	RGD:1624291	RGD
G	Akt1	v-akt murine thymoma viral oncogene homolog 1		IEA	6	137,640,482	137,657,552	RGD:1600115	ENSEMBL
G	Axin1	axin 1		ISO	10	15,409,373	15,462,726	RGD:1624291	RGD
G	Axin1	axin 1		IEA	10	15,409,373	15,462,726	RGD:1600115	ENSEMBL
G	Clu	clusterin		ISO	15	45,365,779	45,405,314	RGD:1624291	RGD
G	Clu	clusterin		IEA	15	45,365,779	45,405,314	RGD:1600115	ENSEMBL
G	Clu	clusterin		ISS	15	45,365,779	45,405,314	RGD:1600115	UniProtKB
G	Csnk1d	casein kinase 1, delta		ISO	10	110,166,244	110,197,233	RGD:1624291	RGD
G	Csnk1d	casein kinase 1, delta		ISS	10	110,166,244	110,197,233	RGD:1600115	UniProtKB
G	Csnk1e	casein kinase 1, epsilon		ISO	7	117,402,718	117,420,764	RGD:1624291	RGD
G	Csnk1e	casein kinase 1, epsilon		IEA	7	117,402,718	117,420,764	RGD:1600115	ENSEMBL
G	Dnajb2	DnaJ (Hsp40) homolog, subfamily B, member 2		ISO	9	74,517,647	74,525,857	RGD:1624291	RGD
G	Dnajb2	DnaJ (Hsp40) homolog, subfamily B, member 2		IEA	9	74,517,647	74,525,857	RGD:1600115	ENSEMBL
G	Dvl1	dishevelled, dsh homolog 1 (Drosophila)		ISO	5	172,705,951	172,717,626	RGD:1624291	RGD
G	Dvl1	dishevelled, dsh homolog 1 (Drosophila)		IEA	5	172,705,951	172,717,626	RGD:1600115	ENSEMBL
G	Fbxo22	F-box protein 22		ISO	8	58,751,584	58,767,613	RGD:1624291	RGD
G	Fbxo22	F-box protein 22		IEA	8	58,751,584	58,767,613	RGD:1600115	ENSEMBL
G	Gclc	glutamate-cysteine ligase, catalytic subunit		ISO	8	82,724,429	82,762,848	RGD:1624291	RGD
G	Gclc	glutamate-cysteine ligase, catalytic subunit		IEA	8	82,724,429	82,762,848	RGD:1600115	ENSEMBL
G	Gnb2l1	guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1		ISO	10	34,067,237	34,072,593	RGD:1624291	RGD
G	Gnb2l1	guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1		ISS	10	34,067,237	34,072,593	RGD:1600115	UniProtKB
G	Hspbp1	HSPA binding protein, cytoplasmic cochaperone 1		ISO	1	67,882,356	67,905,766	RGD:1624291	RGD
G	Hspbp1	HSPA binding protein, cytoplasmic cochaperone 1		IEA	1	67,882,356	67,905,766	RGD:1600115	ENSEMBL
G	LOC100911959	ubiquitin carboxyl-terminal hydrolase 5-like		IEA				RGD:1600115	ENSEMBL
G	Lrrk2	leucine-rich repeat kinase 2		ISO	7	130,105,902	130,267,747	RGD:1624291	RGD
G	Mdm2	p53 E3 ubiquitin protein ligase		ISO	7	56,996,694	57,020,926	RGD:1624291	RGD
G	Mdm2	p53 E3 ubiquitin protein ligase		IEA	7	56,996,694	57,020,926	RGD:1600115	ENSEMBL
G	Nkd2	naked cuticle homolog 2 (Drosophila)		IEA	1	30,252,093	30,278,933	RGD:1600115	ENSEMBL
G	Nkd2	naked cuticle homolog 2 (Drosophila)		ISO	1	30,252,093	30,278,933	RGD:1624291	RGD
G	Nub1	negative regulator of ubiquitin-like proteins 1		ISO	4	5,820,488	5,850,809	RGD:1624291	RGD
G	Plk1	polo-like kinase 1		ISO	1	181,002,811	181,012,741	RGD:1624291	RGD
G	Plk1	polo-like kinase 1		ISS	1	181,002,811	181,012,741	RGD:1600115	UniProtKB
G	Plk2	polo-like kinase 2		IMP	2	41,800,745	41,806,503	RGD:7241135	RGD
G	Prickle1	prickle homolog 1 (Drosophila)		ISO	7	131,967,220	131,986,187	RGD:1624291	RGD
G	Prickle1	prickle homolog 1 (Drosophila)		IEA	7	131,967,220	131,986,187	RGD:1600115	ENSEMBL
G	Psen1	presenilin 1		ISO	6	107,737,543	107,776,357	RGD:1624291	RGD
G	Psen1	presenilin 1		IEA	6	107,737,543	107,776,357	RGD:1600115	ENSEMBL
G	Psen2	presenilin 2		ISO	13	95,934,674	95,951,836	RGD:1624291	RGD
G	Psmd10	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10		ISO				RGD:1624291	RGD
G	Psmd10	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10		ISS				RGD:1600115	UniProtKB
G	Rchy1	ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase		ISO	14	17,683,377	17,698,982	RGD:1624291	RGD
G	Rchy1	ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase		IEA	14	17,683,377	17,698,982	RGD:1600115	ENSEMBL
G	Rnf180	ring finger protein 180		ISO	2	36,186,010	36,253,660	RGD:1624291	RGD
G	Rnf180	ring finger protein 180		IEA	2	36,186,010	36,253,660	RGD:1600115	ENSEMBL
G	Smad7	SMAD family member 7		ISO	18	72,294,803	72,323,354	RGD:1624291	RGD
G	Smad7	SMAD family member 7		IEA	18	72,294,803	72,323,354	RGD:1600115	ENSEMBL
G	Socs5	suppressor of cytokine signaling 5		ISO	6	10,552,177	10,582,783	RGD:1624291	RGD
G	Socs5	suppressor of cytokine signaling 5		IEA	6	10,552,177	10,582,783	RGD:1600115	ENSEMBL
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		IEA	10	15,096,150	15,098,431	RGD:1600115	ENSEMBL
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		ISO	10	15,096,150	15,098,431	RGD:1624291	RGD
G	Sumo1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)		ISO	9	58,212,538	58,242,760	RGD:1624291	RGD
G	Sumo1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)		IEA	9	58,212,538	58,242,760	RGD:1600115	ENSEMBL
G	Taf1	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor		ISO	X	89,590,556	89,666,569	RGD:1624291	RGD
G	Trib1	tribbles homolog 1 (Drosophila)		ISO	7	96,442,239	96,448,785	RGD:1624291	RGD
G	Trib1	tribbles homolog 1 (Drosophila)		IEA	7	96,442,239	96,448,785	RGD:1600115	ENSEMBL
G	Trib2	tribbles homolog 2 (Drosophila)		IEA	6	39,474,243	39,496,718	RGD:1600115	ENSEMBL
G	Ube2v2	ubiquitin-conjugating enzyme E2 variant 2		IMP	11	87,215,842	87,249,726	RGD:1299567	RGD
G	Usp5	ubiquitin specific peptidase 5 (isopeptidase T)		ISO	4	160,937,706	160,952,769	RGD:1624291	RGD
G	Usp5	ubiquitin specific peptidase 5 (isopeptidase T)		IEA	4	160,937,706	160,952,769	RGD:1600115	ENSEMBL
G	Vcp	valosin-containing protein		IMP	5	59,472,100	59,491,508	RGD:1599730	RGD
G	Vcp	valosin-containing protein		ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Plk3	polo-like kinase 3		ISO	5	137,443,540	137,448,715	RGD:1624291	RGD
G	Plk3	polo-like kinase 3		ISS	5	137,443,540	137,448,715	RGD:1600115	UniProtKB
positive regulation of protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apc	adenomatous polyposis coli		ISO	18	26,732,147	26,790,383	RGD:1624291	RGD
G	Apc	adenomatous polyposis coli		ISO	18	26,732,147	26,790,383	RGD:1624291	RGD
G	Apc	adenomatous polyposis coli		IEA	18	26,732,147	26,790,383	RGD:1600115	ENSEMBL
G	Asb9	ankyrin repeat and SOCS box-containing 9		ISO	X	50,712,265	50,748,863	RGD:1624291	RGD
G	Asb9	ankyrin repeat and SOCS box-containing 9		IEA	X	50,712,265	50,748,863	RGD:1600115	ENSEMBL
G	Atg4b	autophagy related 4B, cysteine peptidase		IMP	9	93,054,736	93,063,888	RGD:2301238	RGD
G	Axin1	axin 1		ISO	10	15,409,373	15,462,726	RGD:1624291	RGD
G	Cblb	Cbl proto-oncogene, E3 ubiquitin protein ligase B		ISO	11	49,690,402	49,856,762	RGD:1624291	RGD
G	Cblb	Cbl proto-oncogene, E3 ubiquitin protein ligase B		IEA	11	49,690,402	49,856,762	RGD:1600115	ENSEMBL
G	Cdkn1b	cyclin-dependent kinase inhibitor 1B		ISO	4	171,841,705	171,846,506	RGD:1624291	RGD
G	Cdkn1b	cyclin-dependent kinase inhibitor 1B		IEA	4	171,841,705	171,846,506	RGD:1600115	ENSEMBL
G	Crebrf	CREB3 regulatory factor		IEA	10	16,665,420	16,723,929	RGD:1600115	ENSEMBL
G	Crebrf	CREB3 regulatory factor		ISO	10	16,665,420	16,723,929	RGD:1624291	RGD
G	Csnk2a1	casein kinase 2, alpha 1 polypeptide		ISO	3	142,564,754	142,609,311	RGD:1624291	RGD
G	Csnk2a1	casein kinase 2, alpha 1 polypeptide		ISS	3	142,564,754	142,609,311	RGD:1600115	UniProtKB
G	Cul4b	cullin 4B		ISO	X	6,800,506	6,838,023	RGD:1624291	RGD
G	Cul4b	cullin 4B		IEA	X	6,800,506	6,838,023	RGD:1600115	ENSEMBL
G	Dab2ip	DAB2 interacting protein		ISS	3	14,667,700	14,840,625	RGD:1600115	UniProtKB
G	Dact1	dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)		ISO	6	93,402,304	93,411,668	RGD:1624291	RGD
G	Egln2	EGL nine homolog 2 (C. elegans)		ISO	1	82,233,239	82,240,990	RGD:1624291	RGD
G	Egln2	EGL nine homolog 2 (C. elegans)		IEA	1	82,233,239	82,240,990	RGD:1600115	ENSEMBL
G	Fzr1	fizzy/cell division cycle 20 related 1 (Drosophila)		IEA	7	9,816,491	9,829,006	RGD:1600115	ENSEMBL
G	Gga1	golgi associated, gamma adaptin ear containing, ARF binding protein 1		ISO	7	116,847,192	116,860,029	RGD:1624291	RGD
G	Gga3	golgi associated, gamma adaptin ear containing, ARF binding protein 3		ISO	10	105,665,476	105,684,513	RGD:1624291	RGD
G	Gja1	gap junction protein, alpha 1		IDA	20	35,409,815	35,422,262	RGD:1582696	RGD
G	Gpc3	glypican 3		ISO	X	139,192,115	139,560,649	RGD:1624291	RGD
G	Ier3	immediate early response 3		ISO	20	3,076,568	3,077,772	RGD:1624291	RGD
G	Ier3	immediate early response 3		IEA	20	3,076,568	3,077,772	RGD:1600115	ENSEMBL
G	Itch	itchy E3 ubiquitin protein ligase		ISO	3	145,644,315	145,707,190	RGD:1624291	RGD
G	Itch	itchy E3 ubiquitin protein ligase		IEA	3	145,644,315	145,707,190	RGD:1600115	ENSEMBL
G	Lpcat1	lysophosphatidylcholine acyltransferase 1		ISO	1	30,573,254	30,624,147	RGD:1624291	RGD
G	Lpcat1	lysophosphatidylcholine acyltransferase 1		IEA	1	30,573,254	30,624,147	RGD:1600115	ENSEMBL
G	Mapk15	mitogen-activated protein kinase 15		IMP	7	114,026,694	114,032,007	RGD:2304230	RGD
G	Mylip	myosin regulatory light chain interacting protein		IEA	17	25,308,147	25,329,887	RGD:1600115	ENSEMBL
G	Ndfip1	Nedd4 family interacting protein 1		ISO	18	31,351,538	31,401,736	RGD:1624291	RGD
G	Ndfip1	Nedd4 family interacting protein 1		IEA	18	31,351,538	31,401,736	RGD:1600115	ENSEMBL
G	Nedd4	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase		ISO	8	77,252,500	77,337,402	RGD:1624291	RGD
G	Nedd4	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase		ISO	8	77,252,500	77,337,402	RGD:1624291	RGD
G	Nedd4l	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase		IMP	18	61,134,242	61,477,040	RGD:6893331	RGD
G	Nkd1	naked cuticle homolog 1 (Drosophila)		ISO	19	19,759,537	19,832,877	RGD:1624291	RGD
G	Osbpl7	oxysterol binding protein-like 7		IEA	10	85,771,941	85,789,490	RGD:1600115	ENSEMBL
G	Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha		IEA	8	106,061,334	106,155,090	RGD:1600115	ENSEMBL
G	Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha		ISO	8	106,061,334	106,155,090	RGD:1624291	RGD
G	Rhbdd1	rhomboid domain containing 1		ISO	9	81,685,464	81,778,714	RGD:1624291	RGD
G	Rhbdd1	rhomboid domain containing 1		ISO	9	81,685,464	81,778,714	RGD:1624291	RGD
G	Rhbdd1	rhomboid domain containing 1		ISS	9	81,685,464	81,778,714		UniProtKB
G	Sgsm3	small G protein signaling modulator 3		ISO	7	119,259,355	119,306,023	RGD:1624291	RGD
G	Sgsm3	small G protein signaling modulator 3		IEA	7	119,259,355	119,306,023	RGD:1600115	ENSEMBL
G	Snx1	sorting nexin 1		IMP	8	70,370,336	70,408,991	RGD:68866	RGD
G	Sox17	SRY (sex determining region Y)-box 17		ISO	5	15,241,405	15,246,904	RGD:1624291	RGD
G	Sox17	SRY (sex determining region Y)-box 17		IEA	5	15,241,405	15,246,904	RGD:1600115	ENSEMBL
G	Sox9	SRY (sex determining region Y)-box 9		IDA	10	102,392,187	102,394,256	RGD:2290270	MGI
G	Sox9	SRY (sex determining region Y)-box 9		IEA	10	102,392,187	102,394,256	RGD:1600115	ENSEMBL
G	Sox9	SRY (sex determining region Y)-box 9		ISO	10	102,392,187	102,394,256	RGD:1624291	RGD
G	Trim32	tripartite motif-containing 32		ISO	5	82,380,439	82,391,290	RGD:1624291	RGD
G	Trim32	tripartite motif-containing 32		ISO	5	82,380,439	82,391,290	RGD:1624291	RGD
G	Trim32	tripartite motif-containing 32		ISS	5	82,380,439	82,391,290	RGD:1600115	BHF-UCL
G	Vcp	valosin-containing protein		ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
G	Vcp	valosin-containing protein		ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
G	Vip	vasoactive intestinal peptide		ISO	1	36,361,513	36,369,594	RGD:1624291	RGD
G	Vip	vasoactive intestinal peptide		ISO	1	36,361,513	36,369,594	RGD:1624291	RGD
G	Vip	vasoactive intestinal peptide		IDA	1	36,361,513	36,369,594		BHF-UCL
G	Wnt5a	wingless-type MMTV integration site family, member 5A		ISO	16	3,782,025	3,799,625	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		IEA	16	3,782,025	3,799,625	RGD:1600115	ENSEMBL
positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Axin1	axin 1		ISO	10	15,409,373	15,462,726	RGD:1624291	RGD
G	Axin1	axin 1		IDA	10	15,409,373	15,462,726		BHF-UCL
G	Clu	clusterin		ISO	15	45,365,779	45,405,314	RGD:1624291	RGD
G	Clu	clusterin		IEA	15	45,365,779	45,405,314	RGD:1600115	ENSEMBL
G	Clu	clusterin		ISS	15	45,365,779	45,405,314	RGD:1600115	UniProtKB
G	Disc1	disrupted in schizophrenia 1		ISO	19	55,265,116	55,449,375	RGD:1624291	RGD
G	Disc1	disrupted in schizophrenia 1		IEA	19	55,265,116	55,449,375	RGD:1600115	ENSEMBL
G	Egf	epidermal growth factor		ISO	2	227,103,900	227,195,062	RGD:1624291	RGD
G	Fbxo22	F-box protein 22		ISO	8	58,751,584	58,767,613	RGD:1624291	RGD
G	Fbxo22	F-box protein 22		IEA	8	58,751,584	58,767,613	RGD:1600115	ENSEMBL
G	Fbxw7	F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase		ISO	2	176,675,226	176,750,737	RGD:1624291	RGD
G	Pten	phosphatase and tensin homolog		ISO	1	236,771,027	236,837,261	RGD:1624291	RGD
G	Pten	phosphatase and tensin homolog		IEA	1	236,771,027	236,837,261	RGD:1600115	ENSEMBL
G	Ptk2	protein tyrosine kinase 2		ISO	7	110,933,298	111,084,554	RGD:1624291	RGD
G	Ptk2	protein tyrosine kinase 2		ISS	7	110,933,298	111,084,554	RGD:1600115	UniProtKB
G	Ptk2b	protein tyrosine kinase 2 beta		ISS	15	45,589,222	45,717,866	RGD:1600115	UniProtKB
G	Ptk2b	protein tyrosine kinase 2 beta		ISO	15	45,589,222	45,717,866	RGD:1624291	RGD
G	Sumo3	SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae)		ISO	20	11,393,957	11,404,510	RGD:1624291	RGD
G	Sumo3	SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae)		IEA	20	11,393,957	11,404,510	RGD:1600115	ENSEMBL
G	Trim67	tripartite motif-containing 67		IEA	19	54,976,864	55,011,687	RGD:1600115	ENSEMBL
G	Trim67	tripartite motif-containing 67		ISO	19	54,976,864	55,011,687	RGD:1624291	RGD
proteasomal protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1		ISO	18	62,914,845	62,918,832	RGD:1624291	RGD
G	Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1		IEA	18	62,914,845	62,918,832	RGD:1600115	ENSEMBL
G	Socs6	suppressor of cytokine signaling 6		ISO	18	85,722,868	85,725,214	RGD:1624291	RGD
G	Vhl	von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase		ISO	4	149,529,396	149,536,289	RGD:1624291	RGD
G	Vhl	von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase		IEA	4	149,529,396	149,536,289	RGD:1600115	ENSEMBL
proteasomal ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3		ISO	4	6,038,279	6,064,813	RGD:1624291	RGD
G	Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3		IEA	4	6,038,279	6,064,813	RGD:1600115	ENSEMBL
G	Arrb1	arrestin, beta 1		ISO	1	156,871,564	156,937,540	RGD:1624291	RGD
G	Arrb2	arrestin, beta 2		ISO	10	57,244,071	57,284,166	RGD:1624291	RGD
G	Arrb2	arrestin, beta 2		IEA	10	57,244,071	57,284,166	RGD:1600115	ENSEMBL
G	Atxn3	ataxin 3		ISO	6	126,196,043	126,229,844	RGD:1624291	RGD
G	Atxn3	ataxin 3		ISS	6	126,196,043	126,229,844	RGD:1600115	UniProtKB
G	Birc2	baculoviral IAP repeat-containing 2		ISO	8	4,649,559	4,667,733	RGD:1624291	RGD
G	Birc2	baculoviral IAP repeat-containing 2		IEA	8	4,649,559	4,667,733	RGD:1600115	ENSEMBL
G	Cd2ap	CD2-associated protein		IDA	9	13,827,015	13,888,338	RGD:1302417	RGD
G	Cdc34	cell division cycle 34		ISO	7	11,534,543	11,539,941	RGD:1624291	RGD
G	Cdc34	cell division cycle 34		ISO	7	11,534,543	11,539,941	RGD:1624291	RGD
G	Crbn	cereblon		ISO	4	142,135,935	142,154,730	RGD:1624291	RGD
G	Crbn	cereblon		ISS	4	142,135,935	142,154,730	RGD:1600115	UniProtKB
G	Cul3	cullin 3		ISS	9	79,574,062	79,634,396	RGD:1600115	UniProtKB
G	Cul3	cullin 3		ISO	9	79,574,062	79,634,396	RGD:1624291	RGD
G	Cul3	cullin 3		ISO	9	79,574,062	79,634,396	RGD:1624291	RGD
G	Cul3	cullin 3		ISO	9	79,574,062	79,634,396	RGD:1624291	RGD
G	Ddb1	damage-specific DNA binding protein 1, 127kDa		ISO	1	213,095,187	213,120,986	RGD:1624291	RGD
G	Ddb1	damage-specific DNA binding protein 1, 127kDa		IEA	1	213,095,187	213,120,986	RGD:1600115	ENSEMBL
G	Ddb1	damage-specific DNA binding protein 1, 127kDa		ISS	1	213,095,187	213,120,986	RGD:1600115	UniProtKB
G	Ddit3	DNA-damage inducible transcript 3		ISO	7	67,247,749	67,252,571	RGD:1624291	RGD
G	Ddit3	DNA-damage inducible transcript 3		IEA	7	67,247,749	67,252,571	RGD:1600115	ENSEMBL
G	Ddit3	DNA-damage inducible transcript 3		ISS	7	67,247,749	67,252,571	RGD:1600115	UniProtKB
G	Edem3	ER degradation enhancer, mannosidase alpha-like 3		ISO	13	66,653,931	66,712,432	RGD:1624291	RGD
G	Ercc8	excision repair cross-complementing rodent repair deficiency, complementation group 8		IEA	2	39,382,976	39,420,764	RGD:1600115	ENSEMBL
G	Fbxl3	F-box and leucine-rich repeat protein 3		ISO	15	87,093,141	87,113,003	RGD:1624291	RGD
G	Fbxw11	F-box and WD repeat domain containing 11		ISO	10	17,502,480	17,600,199	RGD:1624291	RGD
G	Fbxw5	F-box and WD repeat domain containing 5		ISO	3	3,673,918	3,677,876	RGD:1624291	RGD
G	Fbxw5	F-box and WD repeat domain containing 5		ISS	3	3,673,918	3,677,876	RGD:1600115	UniProtKB
G	Kctd10	potassium channel tetramerization domain containing 10		ISS				RGD:1600115	UniProtKB
G	Kctd13	potassium channel tetramerisation domain containing 13		ISO	1	186,104,306	186,122,853	RGD:1624291	RGD
G	Kctd13	potassium channel tetramerisation domain containing 13		IEA	1	186,104,306	186,122,853	RGD:1600115	ENSEMBL
G	Klhl20	kelch-like family member 20		ISS	13	76,655,800	76,700,630	RGD:1600115	UniProtKB
G	Klhl20	kelch-like family member 20		ISO	13	76,655,800	76,700,630	RGD:1624291	RGD
G	Klhl42	kelch-like family, member 42		ISO	4	184,688,926	184,709,859	RGD:1624291	RGD
G	LOC682704	similar to CG7220-PA, isoform A		ISS				RGD:1600115	UniProtKB
G	Nfe2l2	nuclear factor, erythroid derived 2, like 2		ISO	3	58,366,693	58,394,116	RGD:1624291	RGD
G	Nfe2l2	nuclear factor, erythroid derived 2, like 2		ISS	3	58,366,693	58,394,116	RGD:1600115	UniProtKB
G	Nhlrc1	NHL repeat containing 1		ISO	17	23,726,054	23,727,244	RGD:1624291	RGD
G	Nhlrc1	NHL repeat containing 1		ISS	17	23,726,054	23,727,244	RGD:1600115	UniProtKB
G	Nploc4	nuclear protein localization 4 homolog (S. cerevisiae)		IEA	10	109,809,121	109,878,278	RGD:1600115	UniPathway
G	Pcbp2	poly(rC) binding protein 2		ISO	7	141,232,766	141,253,910	RGD:1624291	RGD
G	Pcbp2	poly(rC) binding protein 2		IEA	7	141,232,766	141,253,910	RGD:1600115	ENSEMBL
G	Pcnp	PEST proteolytic signal containing nuclear protein		ISO	11	45,572,442	45,580,616	RGD:1624291	RGD
G	Pcnp	PEST proteolytic signal containing nuclear protein		ISS	11	45,572,442	45,580,616	RGD:1600115	HGNC
G	Pml	promyelocytic leukemia		ISO	8	62,020,438	62,051,927	RGD:1624291	RGD
G	Ppp2cb	protein phosphatase 2, catalytic subunit, beta isozyme		ISO	16	62,330,513	62,351,968	RGD:1624291	RGD
G	Ppp2cb	protein phosphatase 2, catalytic subunit, beta isozyme		IEA	16	62,330,513	62,351,968	RGD:1600115	ENSEMBL
G	Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma		ISO	6	135,204,405	135,299,068	RGD:1624291	RGD
G	Psmb5	proteasome (prosome, macropain) subunit, beta type 5		ISO	15	32,689,859	32,694,364	RGD:1624291	RGD
G	Psmb5	proteasome (prosome, macropain) subunit, beta type 5		IEA	15	32,689,859	32,694,364	RGD:1600115	ENSEMBL
G	Psmc5	proteasome (prosome, macropain) 26S subunit, ATPase, 5		ISO	10	95,650,987	95,656,921	RGD:1624291	RGD
G	Psmc5	proteasome (prosome, macropain) 26S subunit, ATPase, 5		ISS	10	95,650,987	95,656,921	RGD:1600115	UniProtKB
G	Psmd12	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12		ISS	10	96,881,373	96,907,258	RGD:1556506	RGD
G	Rad23a	RAD23 homolog A (S. cerevisiae)		IEA	19	24,971,070	24,976,901	RGD:1600115	InterPro
G	Rad23b	RAD23 homolog B (S. cerevisiae)		IEA	5	73,256,542	73,294,296	RGD:1600115	InterPro
G	Rbck1	RanBP-type and C3HC4-type zinc finger containing 1		ISO	3	142,644,156	142,660,799	RGD:1624291	RGD
G	Rbx1	ring-box 1, E3 ubiquitin protein ligase		ISO	7	119,794,976	119,805,104	RGD:1624291	RGD
G	Rbx1	ring-box 1, E3 ubiquitin protein ligase		IEA	7	119,794,976	119,805,104	RGD:1600115	ENSEMBL
G	RGD1309823	similar to hypothetical protein FLJ21156		IEA	5	137,300,780	137,310,153	RGD:1600115	ENSEMBL
G	Rnf187	ring finger protein 187		ISS	10	45,221,784	45,227,683	RGD:1600115	UniProtKB
G	Rnf187	ring finger protein 187		ISO	10	45,221,784	45,227,683	RGD:1624291	RGD
G	Rnf216	ring finger protein 216		ISO	12	11,850,549	11,968,127	RGD:1624291	RGD
G	Rnf4	ring finger protein 4		ISO	14	82,092,024	82,112,036	RGD:1624291	RGD
G	Rnf4	ring finger protein 4		ISO	14	82,092,024	82,112,036	RGD:1624291	RGD
G	Rnf4	ring finger protein 4		ISO	14	82,092,024	82,112,036	RGD:1624291	RGD
G	Rnf4	ring finger protein 4		ISS	14	82,092,024	82,112,036	RGD:1600115	UniProtKB
G	Siah1a	seven in absentia 1A		ISO	19	21,717,141	21,740,751	RGD:1624291	RGD
G	Siah1a	seven in absentia 1A		ISS	19	21,717,141	21,740,751	RGD:1600115	UniProtKB
G	Sirt1	sirtuin 1		IEA	20	25,675,302	25,686,494	RGD:1600115	ENSEMBL
G	Sirt1	sirtuin 1		ISO	20	25,675,302	25,686,494	RGD:1624291	RGD
G	Sirt2	sirtuin 2		ISO	1	83,873,578	83,896,121	RGD:1624291	RGD
G	Sirt2	sirtuin 2		ISS	1	83,873,578	83,896,121	RGD:1600115	UniProtKB
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		IEA	12	9,950,304	10,042,391	RGD:1600115	ENSEMBL
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		ISO	12	9,950,304	10,042,391	RGD:1624291	RGD
G	Spop	speckle-type POZ protein		ISO	10	84,099,990	84,185,130	RGD:1624291	RGD
G	Spopl	speckle-type POZ protein-like		ISO	3	1,518,951	1,579,141	RGD:1624291	RGD
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		ISO	10	15,096,150	15,098,431	RGD:1624291	RGD
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		IEA	10	15,096,150	15,098,431	RGD:1600115	ENSEMBL
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		ISO	10	15,096,150	15,098,431	RGD:1624291	RGD
G	Tbl1x	transducin (beta)-like 1 X-linked		ISO	X	63,310,560	63,392,534	RGD:1624291	RGD
G	Tbl1x	transducin (beta)-like 1 X-linked		IEA	X	63,310,560	63,392,534	RGD:1600115	ENSEMBL
G	Tbl1xr1	transducin (beta)-like 1 X-linked receptor 1		ISO	2	107,561,415	107,688,872	RGD:1624291	RGD
G	Tbl1xr1	transducin (beta)-like 1 X-linked receptor 1		IEA	2	107,561,415	107,688,872	RGD:1600115	ENSEMBL
G	Tnfaip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)		ISO	10	64,632,189	64,646,879	RGD:1624291	RGD
G	Tnfaip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)		ISS	10	64,632,189	64,646,879	RGD:1600115	UniProtKB
G	Topors	topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase		IEA	5	57,663,121	57,676,619	RGD:1600115	ENSEMBL
G	Topors	topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase		ISO	5	57,663,121	57,676,619	RGD:1624291	RGD
G	Trim13	tripartite motif-containing 13		ISO	15	40,743,520	40,752,138	RGD:1624291	RGD
G	Trim63	tripartite motif containing 63, E3 ubiquitin protein ligase		ISO	5	153,059,573	153,073,907	RGD:1624291	RGD
G	Trim63	tripartite motif containing 63, E3 ubiquitin protein ligase		IEA	5	153,059,573	153,073,907	RGD:1600115	ENSEMBL
G	Trim9	tripartite motif-containing 9		ISO	6	92,358,509	92,457,863	RGD:1624291	RGD
G	Trim9	tripartite motif-containing 9		ISS	6	92,358,509	92,457,863	RGD:1600115	UniProtKB
G	Ube2b	ubiquitin-conjugating enzyme E2B		ISO	10	37,509,322	37,523,900	RGD:1624291	RGD
G	Ube2b	ubiquitin-conjugating enzyme E2B		IEA	10	37,509,322	37,523,900	RGD:1600115	ENSEMBL
G	Ube2d3	ubiquitin-conjugating enzyme E2D 3		ISO	2	232,943,214	232,971,022	RGD:1624291	RGD
G	Ube2d3	ubiquitin-conjugating enzyme E2D 3		ISO	2	232,943,214	232,971,022	RGD:1624291	RGD
G	Ube2d3	ubiquitin-conjugating enzyme E2D 3		ISS	2	232,943,214	232,971,022	RGD:1600115	UniProtKB
G	Ube2i	ubiquitin-conjugating enzyme E2I		IMP	10	14,509,948	14,524,551	RGD:730030	RGD
G	Ube2w	ubiquitin-conjugating enzyme E2W		ISO				RGD:1624291	RGD
G	Ufd1l	ubiquitin fusion degradation 1 like (yeast)		IEA				RGD:1600115	UniPathway
G	Usp44	ubiquitin specific peptidase 44		IEA	7	30,898,472	30,971,342	RGD:1600115	ENSEMBL
G	Wwp1	WW domain containing E3 ubiquitin protein ligase 1		ISO	5	34,238,505	34,325,951	RGD:1624291	RGD
G	Wwp1	WW domain containing E3 ubiquitin protein ligase 1		ISO	5	34,238,505	34,325,951	RGD:1624291	RGD
G	Wwp1	WW domain containing E3 ubiquitin protein ligase 1		IEA	5	34,238,505	34,325,951	RGD:1600115	ENSEMBL
G	Wwp2	WW domain containing E3 ubiquitin protein ligase 2		ISO	19	37,302,346	37,428,377	RGD:1624291	RGD
G	Wwp2	WW domain containing E3 ubiquitin protein ligase 2		ISO	19	37,302,346	37,428,377	RGD:1624291	RGD
G	Znrf1	zinc and ring finger 1, E3 ubiquitin protein ligase		ISO	19	41,455,386	41,537,955	RGD:1624291	RGD
G	Znrf1	zinc and ring finger 1, E3 ubiquitin protein ligase		IEA	19	41,455,386	41,537,955	RGD:1600115	ENSEMBL
proteasomal ubiquitin-independent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Enc1	ectodermal-neural cortex 1		ISO	2	27,720,805	27,733,168	RGD:1624291	RGD
G	Keap1	Kelch-like ECH-associated protein 1		ISO	8	20,259,178	20,266,351	RGD:1624291	RGD
G	Keap1	Kelch-like ECH-associated protein 1		ISS	8	20,259,178	20,266,351	RGD:1600115	UniProtKB
G	Nfe2l2	nuclear factor, erythroid derived 2, like 2		ISO	3	58,366,693	58,394,116	RGD:1624291	RGD
G	Nfe2l2	nuclear factor, erythroid derived 2, like 2		ISS	3	58,366,693	58,394,116	RGD:1600115	UniProtKB
protein arginylation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ate1	arginyltransferase 1		ISO	1	189,718,854	189,835,976	RGD:1624291	RGD
G	Ate1	arginyltransferase 1		IEA	1	189,718,854	189,835,976	RGD:1600115	ENSEMBL
protein depalmitoylation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Lypla1	lysophospholipase I		ISO	5	14,882,196	14,911,284	RGD:1624291	RGD
G	Lyplal1	lysophospholipase-like 1		ISO	13	102,143,174	102,171,752	RGD:1624291	RGD
G	Ppt1	palmitoyl-protein thioesterase 1		ISO	5	142,153,498	142,173,401	RGD:1624291	RGD
G	Ppt1	palmitoyl-protein thioesterase 1		ISO	5	142,153,498	142,173,401	RGD:1624291	RGD
G	Ppt1	palmitoyl-protein thioesterase 1		ISO	5	142,153,498	142,173,401	RGD:1624291	RGD
G	Ppt1	palmitoyl-protein thioesterase 1		ISO	5	142,153,498	142,173,401	RGD:1624291	RGD
G	Ppt1	palmitoyl-protein thioesterase 1		ISS	5	142,153,498	142,173,401		UniProtKB
G	Ppt1	palmitoyl-protein thioesterase 1		ISS	5	142,153,498	142,173,401	RGD:1600115	UniProtKB
protein ubiquitination involved in ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Arel1	apoptosis resistant E3 ubiquitin protein ligase 1		IBA	6	108,963,520	108,992,271	RGD:1600115	RefGenome
G	Arih2	ariadne homolog 2 (Drosophila)		ISO	8	113,647,000	113,705,922	RGD:1624291	RGD
G	Arih2	ariadne homolog 2 (Drosophila)		IEA	8	113,647,000	113,705,922	RGD:1600115	ENSEMBL
G	Asb2	ankyrin repeat and SOCS box-containing 2		ISO	6	127,609,500	127,645,492	RGD:1624291	RGD
G	Cblc	Cbl proto-oncogene, E3 ubiquitin protein ligase C		IEA	1	79,091,412	79,108,189	RGD:1600115	ENSEMBL
G	Cblc	Cbl proto-oncogene, E3 ubiquitin protein ligase C		ISO	1	79,091,412	79,108,189	RGD:1624291	RGD
G	Ddb1	damage-specific DNA binding protein 1, 127kDa		ISO	1	213,095,187	213,120,986	RGD:1624291	RGD
G	Ddb1	damage-specific DNA binding protein 1, 127kDa		IEA	1	213,095,187	213,120,986	RGD:1600115	ENSEMBL
G	Fbxl14	F-box and leucine-rich repeat protein 14		ISO	4	155,824,662	155,826,479	RGD:1624291	RGD
G	Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1		IBA	20	49,856,040	49,973,091	RGD:1600115	RefGenome
G	Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1		ISS	20	49,856,040	49,973,091	RGD:1600115	UniProtKB
G	Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1		ISO	20	49,856,040	49,973,091	RGD:1624291	RGD
G	Hectd1	HECT domain containing E3 ubiquitin protein ligase 1		IBA	6	71,842,842	71,930,042	RGD:1600115	RefGenome
G	Hectd2	HECT domain containing 2		IBA	1	240,791,754	240,835,395	RGD:1600115	RefGenome
G	Hecw1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1		IBA	17	58,856,317	59,275,923	RGD:1600115	RefGenome
G	Hecw2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2		IBA	9	52,623,951	52,839,918	RGD:1600115	RefGenome
G	Herc2	HECT and RLD domain containing E3 ubiquitin protein ligase 2		IBA	1	107,440,126	107,645,117	RGD:1600115	RefGenome
G	Herc3	HECT and RLD domain containing E3 ubiquitin protein ligase 3		IBA	4	87,725,194	87,816,242	RGD:1600115	RefGenome
G	Herc6	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6		IBA	4	87,278,557	87,343,287	RGD:1600115	RefGenome
G	Itch	itchy E3 ubiquitin protein ligase		ISO	3	145,644,315	145,707,190	RGD:1624291	RGD
G	Itch	itchy E3 ubiquitin protein ligase		IBA	3	145,644,315	145,707,190	RGD:1600115	RefGenome
G	Lnx1	ligand of numb-protein X 1, E3 ubiquitin protein ligase		ISO	14	35,888,702	35,992,436	RGD:1624291	RGD
G	Lnx1	ligand of numb-protein X 1, E3 ubiquitin protein ligase		IEA	14	35,888,702	35,992,436	RGD:1600115	ENSEMBL
G	LOC501546	hypothetical protein LOC501546		IBA	X	41,269,837	41,397,687	RGD:1600115	RefGenome
G	Map3k1	mitogen activated protein kinase kinase kinase 1		IGI	2	43,062,252	43,126,058	RGD:729224	RGD
G	Mdm2	p53 E3 ubiquitin protein ligase		ISO	7	56,996,694	57,020,926	RGD:1624291	RGD
G	Mdm2	p53 E3 ubiquitin protein ligase		IEA	7	56,996,694	57,020,926	RGD:1600115	ENSEMBL
G	Mylip	myosin regulatory light chain interacting protein		IEA	17	25,308,147	25,329,887	RGD:1600115	ENSEMBL
G	Nedd4	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase		ISO	8	77,252,500	77,337,402	RGD:1624291	RGD
G	Nedd4	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase		ISO	8	77,252,500	77,337,402	RGD:1624291	RGD
G	Nedd4	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase		ISO	8	77,252,500	77,337,402	RGD:1624291	RGD
G	Nedd4	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase		ISO	8	77,252,500	77,337,402	RGD:1624291	RGD
G	Nedd4l	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase		IBA	18	61,134,242	61,477,040	RGD:1600115	RefGenome
G	Os9	osteosarcoma amplified 9		ISO	7	67,046,802	67,073,355	RGD:1624291	RGD
G	Park2	parkinson protein 2, E3 ubiquitin protein ligase		ISO	1	43,151,265	44,374,470	RGD:1624291	RGD
G	Rbbp6	retinoblastoma binding protein 6		ISO	1	181,818,248	181,849,942	RGD:1624291	RGD
G	Rbbp6	retinoblastoma binding protein 6		IEA	1	181,818,248	181,849,942	RGD:1600115	ENSEMBL
G	Rchy1	ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase		ISO	14	17,683,377	17,698,982	RGD:1624291	RGD
G	RGD1309762	similar to KIAA0614 protein		IBA	12	36,318,373	36,423,169	RGD:1600115	RefGenome
G	RGD1309823	similar to hypothetical protein FLJ21156		IBA	5	137,300,780	137,310,153	RGD:1600115	RefGenome
G	Rnf11	ring finger protein 11		ISO	5	130,807,625	130,830,929	RGD:1624291	RGD
G	Rnf144b	ring finger protein 144B		IEA	17	23,483,622	23,615,443	RGD:1600115	ENSEMBL
G	Rnf144b	ring finger protein 144B		ISO	17	23,483,622	23,615,443	RGD:1624291	RGD
G	Rnf146	ring finger protein 146		ISO	1	29,255,138	29,265,731	RGD:1624291	RGD
G	Rnf43	ring finger protein 43		IEA	10	75,957,792	76,027,392	RGD:1600115	ENSEMBL
G	Rnf43	ring finger protein 43		ISO	10	75,957,792	76,027,392	RGD:1624291	RGD
G	Siah1a	seven in absentia 1A		IDA	19	21,717,141	21,740,751	RGD:633984	RGD
G	Siah1a	seven in absentia 1A		ISO	19	21,717,141	21,740,751	RGD:1624291	RGD
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		IBA	12	9,950,304	10,042,391	RGD:1600115	RefGenome
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		ISO	12	9,950,304	10,042,391	RGD:1624291	RGD
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		ISO	12	9,950,304	10,042,391	RGD:1624291	RGD
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		ISO	12	9,950,304	10,042,391	RGD:1624291	RGD
G	Smurf2	SMAD specific E3 ubiquitin protein ligase 2		IBA	10	96,170,590	96,269,365	RGD:1600115	RefGenome
G	Spop	speckle-type POZ protein		ISO	10	84,099,990	84,185,130	RGD:1624291	RGD
G	Trim32	tripartite motif-containing 32		ISO	5	82,380,439	82,391,290	RGD:1624291	RGD
G	Trip12	thyroid hormone receptor interactor 12		IBA	9	83,961,411	84,085,077	RGD:1600115	RefGenome
G	Trip12	thyroid hormone receptor interactor 12		ISS	9	83,961,411	84,085,077	RGD:1600115	UniProtKB
G	Trip12	thyroid hormone receptor interactor 12		ISO	9	83,961,411	84,085,077	RGD:1624291	RGD
G	Trip12	thyroid hormone receptor interactor 12		ISO	9	83,961,411	84,085,077	RGD:1624291	RGD
G	Trip12	thyroid hormone receptor interactor 12		ISO	9	83,961,411	84,085,077	RGD:1624291	RGD
G	Ube3a	ubiquitin protein ligase E3A		IBA	1	110,729,142	110,816,491	RGD:1600115	RefGenome
G	Ube3c	ubiquitin protein ligase E3C		IBA	4	889,640	991,900	RGD:1600115	RefGenome
G	Uhrf1	ubiquitin-like with PHD and ring finger domains 1		ISO				RGD:1624291	RGD
G	Wwp1	WW domain containing E3 ubiquitin protein ligase 1		IBA	5	34,238,505	34,325,951	RGD:1600115	RefGenome
G	Wwp2	WW domain containing E3 ubiquitin protein ligase 2		IBA	19	37,302,346	37,428,377	RGD:1600115	RefGenome
proteolysis involved in cellular protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Casp8	caspase 8		ISO	9	57,389,353	57,437,803	RGD:1624291	RGD
G	Casp8	caspase 8		IEA	9	57,389,353	57,437,803	RGD:1600115	ENSEMBL
G	Clpx	ClpX caseinolytic peptidase X homolog (E. coli)		ISO	8	69,530,991	69,572,018	RGD:1624291	RGD
G	Clpx	ClpX caseinolytic peptidase X homolog (E. coli)		IEA	8	69,530,991	69,572,018	RGD:1600115	ENSEMBL
G	Cpa1	carboxypeptidase A1 (pancreatic)		TAS	4	57,549,260	57,555,361	RGD:1578424	RGD
G	Dnajc3	DnaJ (Hsp40) homolog, subfamily C, member 3		ISO	15	103,881,634	103,921,295	RGD:1624291	RGD
G	Dnajc3	DnaJ (Hsp40) homolog, subfamily C, member 3		IEA	15	103,881,634	103,921,295	RGD:1600115	ENSEMBL
G	Gzma	granzyme A		ISO	2	44,488,295	44,500,128	RGD:1624291	RGD
G	Hspa5	heat shock protein 5		ISO	3	13,783,825	13,788,022	RGD:1624291	RGD
G	Hspa5	heat shock protein 5		IEA	3	13,783,825	13,788,022	RGD:1600115	ENSEMBL
G	Ide	insulin degrading enzyme		IMP	1	241,547,869	241,646,052	RGD:1626704	RGD
G	Ide	insulin degrading enzyme		ISO	1	241,547,869	241,646,052	RGD:1624291	RGD
G	Lonp1	lon peptidase 1, mitochondrial		ISO				RGD:1624291	RGD
G	Lonp1	lon peptidase 1, mitochondrial		ISO				RGD:1624291	RGD
G	Plg	plasminogen		IDA	1	42,782,464	42,825,149	RGD:1299253	RGD
G	Plg	plasminogen		IDA	1	42,782,464	42,825,149	RGD:2301095	RGD
G	Psma6	proteasome (prosome, macropain) subunit, alpha type 6		ISO	6	75,649,844	75,667,404	RGD:1624291	RGD
G	Psma6	proteasome (prosome, macropain) subunit, alpha type 6		ISS	6	75,649,844	75,667,404	RGD:1600115	BHF-UCL
G	Psmb1	proteasome (prosome, macropain) subunit, beta type 1		IEA	1	54,369,775	54,388,816	RGD:1600115	InterPro
G	Psmb10	proteasome (prosome, macropain) subunit, beta type 10		IEA	19	35,777,710	35,780,194	RGD:1600115	InterPro
G	Psmb11	proteasome (prosome, macropain) subunit, beta type, 11		IEA	15	32,697,633	32,705,078	RGD:1600115	InterPro
G	Psmb2	proteasome (prosome, macropain) subunit, beta type 2		IEA	5	146,089,234	146,121,978	RGD:1600115	InterPro
G	Psmb3	proteasome (prosome, macropain) subunit, beta type 3		IEA	10	86,452,533	86,459,616	RGD:1600115	InterPro
G	Psmb4	proteasome (prosome, macropain) subunit, beta type 4		IEA	2	189,778,476	189,781,169	RGD:1600115	InterPro
G	Psmb5	proteasome (prosome, macropain) subunit, beta type 5		IEA	15	32,689,859	32,694,364	RGD:1600115	InterPro
G	Psmb6	proteasome (prosome, macropain) subunit, beta type 6		IEA	10	57,370,397	57,372,704	RGD:1600115	InterPro
G	Psmb7	proteasome (prosome, macropain) subunit, beta type 7		IEA	3	18,384,197	18,451,208	RGD:1600115	InterPro
G	Psmb8	proteasome (prosome, macropain) subunit, beta type, 8		IEA	20	4,786,260	4,789,223	RGD:1600115	InterPro
G	Psmb9	proteasome (prosome, macropain) subunit, beta type, 9		IEA	20	4,801,187	4,806,608	RGD:1600115	InterPro
G	RGD1564425	similar to Proteasome subunit beta type 3 (Proteasome theta chain)		IEA	3	119,160,431	119,161,048	RGD:1600115	InterPro
regulation of low-density lipoprotein particle receptor catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Mylip	myosin regulatory light chain interacting protein		IEA	17	25,308,147	25,329,887	RGD:1600115	ENSEMBL
G	Pcsk9	proprotein convertase subtilisin/kexin type 9		ISO	5	127,501,476	127,524,289	RGD:1624291	RGD
G	Pcsk9	proprotein convertase subtilisin/kexin type 9		ISO	5	127,501,476	127,524,289	RGD:1624291	RGD
G	Pcsk9	proprotein convertase subtilisin/kexin type 9		IEA	5	127,501,476	127,524,289	RGD:1600115	ENSEMBL
regulation of proteasomal protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Btrc	beta-transducin repeat containing E3 ubiquitin protein ligase		ISO	1	250,528,730	250,693,952	RGD:1624291	RGD
G	Btrc	beta-transducin repeat containing E3 ubiquitin protein ligase		IEA	1	250,528,730	250,693,952	RGD:1600115	ENSEMBL
G	Dlgap1	discs, large (Drosophila) homolog-associated protein 1		IMP	9	109,455,911	110,018,738		BHF-UCL
G	Dyx1c1	dyslexia susceptibility 1 candidate 1		ISO	8	77,702,354	77,715,547	RGD:1624291	RGD
G	Dyx1c1	dyslexia susceptibility 1 candidate 1		ISS	8	77,702,354	77,715,547	RGD:1600115	UniProtKB
G	Gpx1	glutathione peroxidase 1		ISO				RGD:1624291	RGD
G	Gpx1	glutathione peroxidase 1		IEA				RGD:1600115	ENSEMBL
G	Prkaca	protein kinase, cAMP-dependent, catalytic, alpha		ISO	19	25,840,795	25,864,786	RGD:1624291	RGD
G	Prkaca	protein kinase, cAMP-dependent, catalytic, alpha		IEA	19	25,840,795	25,864,786	RGD:1600115	ENSEMBL
G	Psmd14	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14		ISO	3	43,660,136	43,699,412	RGD:1624291	RGD
G	Psmd14	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14		IEA	3	43,660,136	43,699,412	RGD:1600115	ENSEMBL
G	Psme3	proteasome (prosome, macropain) activator subunit 3		ISO	10	90,343,493	90,351,335	RGD:1624291	RGD
G	Rhbdf1	rhomboid 5 homolog 1 (Drosophila)		ISO	10	15,653,948	15,666,851	RGD:1624291	RGD
G	Rhbdf1	rhomboid 5 homolog 1 (Drosophila)		ISS	10	15,653,948	15,666,851	RGD:1600115	UniProtKB
G	Uchl5	ubiquitin carboxyl-terminal hydrolase L5		ISO	13	57,605,912	57,643,050	RGD:1624291	RGD
G	Uchl5	ubiquitin carboxyl-terminal hydrolase L5		IEA	13	57,605,912	57,643,050	RGD:1600115	ENSEMBL
G	Usp14	ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase)		ISO	18	1,292,799	1,330,478	RGD:1624291	RGD
G	Usp14	ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase)		IEA	18	1,292,799	1,330,478	RGD:1600115	ENSEMBL
regulation of proteasomal ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Commd1	copper metabolism (Murr1) domain containing 1		IEA	14	103,571,472	103,667,692	RGD:1600115	ENSEMBL
G	Commd1	copper metabolism (Murr1) domain containing 1		ISO	14	103,571,472	103,667,692	RGD:1624291	RGD
G	Glmn	glomulin, FKBP associated protein		IEA	14	2,744,359	2,789,190	RGD:1600115	ENSEMBL
G	Glmn	glomulin, FKBP associated protein		ISO	14	2,744,359	2,789,190	RGD:1624291	RGD
G	Rad23a	RAD23 homolog A (S. cerevisiae)		ISO	19	24,971,070	24,976,901	RGD:1624291	RGD
G	Rad23a	RAD23 homolog A (S. cerevisiae)		IEA	19	24,971,070	24,976,901	RGD:1600115	ENSEMBL
G	Rad23b	RAD23 homolog B (S. cerevisiae)		ISO	5	73,256,542	73,294,296	RGD:1624291	RGD
G	Rad23b	RAD23 homolog B (S. cerevisiae)		IEA	5	73,256,542	73,294,296	RGD:1600115	ENSEMBL
G	Ube2k	ubiquitin-conjugating enzyme E2K		ISO	14	45,349,287	45,411,823	RGD:1624291	RGD
G	Ube2k	ubiquitin-conjugating enzyme E2K		ISO	14	45,349,287	45,411,823	RGD:1624291	RGD
G	Ubqln4	ubiquilin 4		IEA	2	180,669,525	180,684,724	RGD:1600115	ENSEMBL
G	Ubqln4	ubiquilin 4		ISO	2	180,669,525	180,684,724	RGD:1624291	RGD
G	Wnt10b	wingless-type MMTV integration site family, member 10B		ISO	7	137,541,197	137,547,000	RGD:1624291	RGD
regulation of protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Arntl	aryl hydrocarbon receptor nuclear translocator-like		ISO	1	171,062,181	171,162,426	RGD:1624291	RGD
G	Arntl	aryl hydrocarbon receptor nuclear translocator-like		IEA	1	171,062,181	171,162,426	RGD:1600115	ENSEMBL
G	Cast	calpastatin		TAS	2	1,495,048	1,608,477	RGD:1298731	RGD
G	Cdc42	cell division cycle 42 (GTP binding protein)		ISO	5	156,106,123	156,143,040	RGD:1624291	RGD
G	Cdc42	cell division cycle 42 (GTP binding protein)		IEA	5	156,106,123	156,143,040	RGD:1600115	ENSEMBL
G	Chek2	checkpoint kinase 2		ISO	12	45,933,900	45,965,427	RGD:1624291	RGD
G	Chek2	checkpoint kinase 2		IEA	12	45,933,900	45,965,427	RGD:1600115	ENSEMBL
G	Faf1	Fas (TNFRSF6) associated factor 1		IEA	5	131,027,463	131,394,549	RGD:1600115	ENSEMBL
G	Faf1	Fas (TNFRSF6) associated factor 1		ISO	5	131,027,463	131,394,549	RGD:1624291	RGD
G	Faf1	Fas (TNFRSF6) associated factor 1		ISS	5	131,027,463	131,394,549	RGD:1600115	UniProtKB
G	Furin	furin (paired basic amino acid cleaving enzyme)		ISO	1	136,209,969	136,222,057	RGD:1624291	RGD
G	LOC100363283	UBX domain protein 2A		IEA	6	28,187,320	28,213,193	RGD:1600115	ENSEMBL
G	Mdm2	p53 E3 ubiquitin protein ligase		ISO	7	56,996,694	57,020,926	RGD:1624291	RGD
G	Ppp2ca	protein phosphatase 2, catalytic subunit, alpha isozyme		IMP	10	37,621,256	37,641,008		MGI
G	Psmd1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1		IEA	9	84,807,822	84,882,942	RGD:1600115	InterPro
G	Psmd2	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2		IEA	11	82,478,177	82,488,804	RGD:1600115	InterPro
G	Psmd3	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3		IEA	10	87,456,442	87,468,383	RGD:1600115	InterPro
G	Serpinb1a	serine (or cysteine) proteinase inhibitor, clade B, member 1a		ISO	17	37,950,875	37,959,284	RGD:1624291	RGD
G	Serpinb1a	serine (or cysteine) proteinase inhibitor, clade B, member 1a		IEA	17	37,950,875	37,959,284	RGD:1600115	ENSEMBL
G	Serpinb1b	serine (or cysteine) peptidase inhibitor, clade B, member 1b		ISO	17	37,679,496	37,686,875	RGD:1624291	RGD
G	Ubxn2a	UBX domain protein 2A		IEA	6	29,554,836	29,558,146	RGD:1600115	ENSEMBL
G	Xpo1	exportin 1, CRM1 homolog (yeast)		ISO	14	103,943,249	103,978,717	RGD:1624291	RGD
G	Xpo1	exportin 1, CRM1 homolog (yeast)		IEA	14	103,943,249	103,978,717	RGD:1600115	ENSEMBL
regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ptk2b	protein tyrosine kinase 2 beta		ISO	15	45,589,222	45,717,866	RGD:1624291	RGD
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ccnf	cyclin F		ISO	10	13,474,659	13,500,979	RGD:1624291	RGD
G	Ccnf	cyclin F		ISS	10	13,474,659	13,500,979	RGD:1600115	UniProtKB
G	Cul1	cullin 1		ISO	4	75,636,914	75,705,724	RGD:1624291	RGD
G	Cul1	cullin 1		IEA	4	75,636,914	75,705,724	RGD:1600115	ENSEMBL
G	Cul1	cullin 1		ISO	4	75,636,914	75,705,724	RGD:1624291	RGD
G	Fbxl15	F-box and leucine-rich repeat protein 15		ISS	1	251,544,341	251,546,582	RGD:1600115	UniProtKB
G	Fbxl15	F-box and leucine-rich repeat protein 15		ISO	1	251,544,341	251,546,582	RGD:1624291	RGD
G	Fbxl3	F-box and leucine-rich repeat protein 3		IEA	15	87,093,141	87,113,003	RGD:1600115	ENSEMBL
G	Fbxl3	F-box and leucine-rich repeat protein 3		ISO	15	87,093,141	87,113,003	RGD:1624291	RGD
G	Fbxl5	F-box and leucine-rich repeat protein 5		IEA	14	72,471,063	72,510,384	RGD:1600115	ENSEMBL
G	Fbxl5	F-box and leucine-rich repeat protein 5		ISO	14	72,471,063	72,510,384	RGD:1624291	RGD
G	Fbxl5	F-box and leucine-rich repeat protein 5		ISO	14	72,471,063	72,510,384	RGD:1624291	RGD
G	Fbxl5	F-box and leucine-rich repeat protein 5		ISO	14	72,471,063	72,510,384	RGD:1624291	RGD
G	Fbxl7	F-box and leucine-rich repeat protein 7		ISO	2	78,232,361	78,610,165	RGD:1624291	RGD
G	Fbxl7	F-box and leucine-rich repeat protein 7		IEA	2	78,232,361	78,610,165	RGD:1600115	ENSEMBL
G	Fbxo2	F-box protein 2		ISO	5	165,239,080	165,244,509	RGD:1624291	RGD
G	Fbxo2	F-box protein 2		IEA	5	165,239,080	165,244,509	RGD:1600115	ENSEMBL
G	Fbxo31	F-box protein 31		ISS	19	51,836,918	51,837,223	RGD:1600115	UniProtKB
G	Fbxo31	F-box protein 31		ISO	19	51,836,918	51,837,223	RGD:1624291	RGD
G	Fbxo31	F-box protein 31		IEA	19	51,836,918	51,837,223	RGD:1600115	InterPro
G	Fbxo4	F-box protein 4		ISO	2	53,871,746	53,884,722	RGD:1624291	RGD
G	Fbxo6	F-box protein 6		ISO	5	165,223,009	165,226,420	RGD:1624291	RGD
G	Fbxo6	F-box protein 6		ISO	5	165,223,009	165,226,420	RGD:1624291	RGD
G	Fbxo6	F-box protein 6		ISS	5	165,223,009	165,226,420	RGD:1600115	UniProtKB
G	Fbxo9	f-box protein 9		ISO	8	83,056,071	83,081,992	RGD:1624291	RGD
G	Fbxo9	f-box protein 9		ISS	8	83,056,071	83,081,992	RGD:1600115	UniProtKB
G	Fbxw11	F-box and WD repeat domain containing 11		ISO	10	17,502,480	17,600,199	RGD:1624291	RGD
G	Fbxw11	F-box and WD repeat domain containing 11		IEA	10	17,502,480	17,600,199	RGD:1600115	ENSEMBL
G	Fbxw11	F-box and WD repeat domain containing 11		IEA	10	17,502,480	17,600,199	RGD:1600115	ENSEMBL
G	Fbxw11	F-box and WD repeat domain containing 11		ISO	10	17,502,480	17,600,199	RGD:1624291	RGD
G	Fbxw5	F-box and WD repeat domain containing 5		ISO	3	3,673,918	3,677,876	RGD:1624291	RGD
G	Fbxw5	F-box and WD repeat domain containing 5		ISS	3	3,673,918	3,677,876	RGD:1600115	UniProtKB
G	Fbxw7	F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase		ISO	2	176,675,226	176,750,737	RGD:1624291	RGD
G	Rbx1	ring-box 1, E3 ubiquitin protein ligase		ISO	7	119,794,976	119,805,104	RGD:1624291	RGD
G	Rbx1	ring-box 1, E3 ubiquitin protein ligase		ISO	7	119,794,976	119,805,104	RGD:1624291	RGD
G	Skp1	S-phase kinase-associated protein 1		ISO	10	37,665,417	37,680,338	RGD:1624291	RGD
G	Skp1	S-phase kinase-associated protein 1		ISO	10	37,665,417	37,680,338	RGD:1624291	RGD
G	Skp1	S-phase kinase-associated protein 1		ISO	10	37,665,417	37,680,338	RGD:1624291	RGD
G	Skp1	S-phase kinase-associated protein 1		ISS	10	37,665,417	37,680,338	RGD:1600115	UniProtKB
ubiquitin-dependent protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Amfr	autocrine motility factor receptor, E3 ubiquitin protein ligase		ISO	19	11,434,553	11,467,592	RGD:1624291	RGD
G	Amfr	autocrine motility factor receptor, E3 ubiquitin protein ligase		ISO	19	11,434,553	11,467,592	RGD:1624291	RGD
G	Anapc2	anaphase promoting complex subunit 2		IEA	3	3,436,569	3,448,278	RGD:1600115	InterPro
G	Arih1	ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)		ISO	8	63,201,871	63,305,302	RGD:1624291	RGD
G	Arih1	ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)		IEA	8	63,201,871	63,305,302	RGD:1600115	ENSEMBL
G	Arih2	ariadne homolog 2 (Drosophila)		ISO	8	113,647,000	113,705,922	RGD:1624291	RGD
G	Atxn3	ataxin 3		ISO	6	126,196,043	126,229,844	RGD:1624291	RGD
G	Bag6	BCL2-associated athanogene 6		ISO	20	3,739,593	3,752,311	RGD:1624291	RGD
G	Bag6	BCL2-associated athanogene 6		ISS	20	3,739,593	3,752,311	RGD:1600115	UniProtKB
G	Bap1	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)		IEA	16	6,684,470	6,693,296	RGD:1600115	InterPro
G	Btrc	beta-transducin repeat containing E3 ubiquitin protein ligase		IEA	1	250,528,730	250,693,952	RGD:1600115	ENSEMBL
G	Btrc	beta-transducin repeat containing E3 ubiquitin protein ligase		ISO	1	250,528,730	250,693,952	RGD:1624291	RGD
G	Cacul1	CDK2-associated, cullin domain 1		IEA	1	267,131,708	267,190,496	RGD:1600115	InterPro
G	Chfr	checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase		ISO	12	46,651,265	46,684,689	RGD:1624291	RGD
G	Chfr	checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase		IEA	12	46,651,265	46,684,689	RGD:1600115	ENSEMBL
G	Cul2	cullin 2		IEA	17	62,701,289	62,741,344	RGD:1600115	InterPro
G	Cul4a	cullin 4A		IEA	16	81,242,293	81,279,498	RGD:1600115	InterPro
G	Cul4b	cullin 4B		IEA	X	6,800,506	6,838,023	RGD:1600115	InterPro
G	Cul5	cullin 5		IEA	8	57,080,787	57,132,486	RGD:1600115	InterPro
G	Cul7	cullin 7		IEA	9	10,020,543	10,034,167	RGD:1600115	InterPro
G	Cul9	cullin 9		IEA	9	9,800,224	9,863,348	RGD:1600115	InterPro
G	Cyld	cylindromatosis (turban tumor syndrome)		IEA				RGD:1600115	InterPro
G	Dtl	denticleless E3 ubiquitin protein ligase homolog (Drosophila)		ISO	13	107,603,353	107,640,812	RGD:1624291	RGD
G	Fbxl12	F-box and leucine-rich repeat protein 12		ISO	8	19,656,937	19,661,560	RGD:1624291	RGD
G	Fbxl12	F-box and leucine-rich repeat protein 12		IEA	8	19,656,937	19,661,560	RGD:1600115	ENSEMBL
G	Fbxl2	F-box and leucine-rich repeat protein 2		ISO	8	118,621,502	118,669,052	RGD:1624291	RGD
G	Fbxl2	F-box and leucine-rich repeat protein 2		IEA	8	118,621,502	118,669,052	RGD:1600115	ENSEMBL
G	Fbxo2	F-box protein 2		ISO	5	165,239,080	165,244,509	RGD:1624291	RGD
G	Fbxo32	F-box protein 32		TAS	7	94,909,568	94,942,444	RGD:728366	RGD
G	Fbxo4	F-box protein 4		ISO	2	53,871,746	53,884,722	RGD:1624291	RGD
G	Fbxo8	F-box protein 8		ISO	16	37,093,835	37,139,103	RGD:1624291	RGD
G	Fbxo8	F-box protein 8		IEA	16	37,093,835	37,139,103	RGD:1600115	ENSEMBL
G	Hdac6	histone deacetylase 6		ISO	X	26,585,852	26,606,999	RGD:1624291	RGD
G	Herpud1	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1		ISO	19	11,036,567	11,046,914	RGD:1624291	RGD
G	Herpud1	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1		IEA	19	11,036,567	11,046,914	RGD:1600115	ENSEMBL
G	Itch	itchy E3 ubiquitin protein ligase		ISO	3	145,644,315	145,707,190	RGD:1624291	RGD
G	Itch	itchy E3 ubiquitin protein ligase		ISO	3	145,644,315	145,707,190	RGD:1624291	RGD
G	Lnx1	ligand of numb-protein X 1, E3 ubiquitin protein ligase		ISO	14	35,888,702	35,992,436	RGD:1624291	RGD
G	LOC100361067	proteasome subunit alpha type-3-like		IEA	10	64,676,282	64,677,206	RGD:1600115	InterPro
G	LOC100366198	seven in absentia homolog 3-like		IEA				RGD:1600115	InterPro
G	LOC100911860	ubiquitin carboxyl-terminal hydrolase 40-like		IEA				RGD:1600115	InterPro
G	LOC100911959	ubiquitin carboxyl-terminal hydrolase 5-like		IEA				RGD:1600115	InterPro
G	LOC100911993	ubiquitin carboxyl-terminal hydrolase 48-like		IEA				RGD:1600115	InterPro
G	LOC100912059	ubiquitin carboxyl-terminal hydrolase 12-like		IEA				RGD:1600115	InterPro
G	LOC689730	similar to ubiquitin specific peptidase 17 (homolog)		IEA	1	162,532,158	162,549,650	RGD:1600115	InterPro
G	Nub1	negative regulator of ubiquitin-like proteins 1		ISO	4	5,820,488	5,850,809	RGD:1624291	RGD
G	Pan2	PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)		IEA	7	1,592,319	1,609,170	RGD:1600115	InterPro
G	Park2	parkinson protein 2, E3 ubiquitin protein ligase		TAS	1	43,151,265	44,374,470	RGD:628414	RGD
G	Park2	parkinson protein 2, E3 ubiquitin protein ligase		ISO	1	43,151,265	44,374,470	RGD:1624291	RGD
G	Park2	parkinson protein 2, E3 ubiquitin protein ligase		ISS	1	43,151,265	44,374,470	RGD:1600115	UniProtKB
G	Psma1	proteasome (prosome, macropain) subunit, alpha type 1		IEA	1	172,237,763	172,248,782	RGD:1600115	InterPro
G	Psma2	proteasome (prosome, macropain) subunit, alpha type 2		IEA	17	58,736,300	58,746,837	RGD:1600115	InterPro
G	Psma3	proteasome (prosome, macropain) subunit, alpha type 3		IEA	6	93,092,191	93,112,167	RGD:1600115	InterPro
G	Psma3l	proteasome subunit alpha type 3-like		IEA	10	93,092,166	93,111,072	RGD:1600115	InterPro
G	Psma4	proteasome (prosome, macropain) subunit, alpha type 4		IEA	8	58,508,643	58,516,103	RGD:1600115	InterPro
G	Psma5	proteasome (prosome, macropain) subunit, alpha type 5		IEA	2	203,825,060	203,848,378	RGD:1600115	InterPro
G	Psma6	proteasome (prosome, macropain) subunit, alpha type 6		IEA	6	75,649,844	75,667,404	RGD:1600115	InterPro
G	Psma7	proteasome (prosome, macropain) subunit, alpha type 7		IEA	3	169,100,807	169,107,149	RGD:1600115	InterPro
G	Psma8	proteasome (prosome, macropain) subunit, alpha type, 8		IEA	18	6,042,097	6,047,010	RGD:1600115	InterPro
G	Psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2		ISO	4	8,704,100	8,718,351	RGD:1624291	RGD
G	Psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2		IEA	4	8,704,100	8,718,351	RGD:1600115	ENSEMBL
G	Psmd11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11		IEA	10	68,664,950	68,710,616	RGD:1600115	ENSEMBL
G	Psmd11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11		ISS	10	68,664,950	68,710,616	RGD:1600115	UniProtKB
G	Psmd11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11		ISO	10	68,664,950	68,710,616	RGD:1624291	RGD
G	Psmd4	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4		IEA	2	189,933,161	189,942,421	RGD:1600115	InterPro
G	RGD1310257	similar to RIKEN cDNA 6330408A02 gene		IEA	1	73,708,507	73,728,764	RGD:1600115	InterPro
G	RGD1561252	similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (Ubiquitin thiolesterase L3)		IEA	5	79,583,604	79,588,158	RGD:1600115	InterPro
G	RGD1565607	similar to mouse deubiquitinating enzyme 6		IEA				RGD:1600115	InterPro
G	Rlim	ring finger protein, LIM domain interacting		ISO	X	91,969,453	91,985,349	RGD:1624291	RGD
G	Rnf11	ring finger protein 11		ISO	5	130,807,625	130,830,929	RGD:1624291	RGD
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase		ISS	11	70,304,917	70,328,010	RGD:1600115	UniProtKB
G	Rnf168	ring finger protein 168, E3 ubiquitin protein ligase		ISO	11	70,304,917	70,328,010	RGD:1624291	RGD
G	Rnf20	ring finger protein 20, E3 ubiquitin protein ligase		IEA	5	66,371,470	66,397,538	RGD:1600115	ENSEMBL
G	Rnf20	ring finger protein 20, E3 ubiquitin protein ligase		ISO	5	66,371,470	66,397,538	RGD:1624291	RGD
G	Rnf40	ring finger protein 40, E3 ubiquitin protein ligase		IDA	1	186,876,103	186,890,731	RGD:633892	RGD
G	Rnf6	ring finger protein (C3H2C3 type) 6		ISO	12	9,193,659	9,203,700	RGD:1624291	RGD
G	Rnf6	ring finger protein (C3H2C3 type) 6		IEA	12	9,193,659	9,203,700	RGD:1600115	ENSEMBL
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase		ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase		ISO	20	7,929,802	7,954,697	RGD:1624291	RGD
G	Rnf8	ring finger protein 8, E3 ubiquitin protein ligase		ISS	20	7,929,802	7,954,697	RGD:1600115	UniProtKB
G	Siah2	siah E3 ubiquitin protein ligase 2		IEA	2	148,022,641	148,040,390	RGD:1600115	InterPro
G	Siah3	siah E3 ubiquitin protein ligase family member 3		IEA	15	56,320,672	56,387,549	RGD:1600115	InterPro
G	Skp2	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase		ISO	2	58,769,164	58,797,229	RGD:1624291	RGD
G	Skp2	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase		ISO	2	58,769,164	58,797,229	RGD:1624291	RGD
G	Skp2	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase		IEA	2	58,769,164	58,797,229	RGD:1600115	ENSEMBL
G	Smurf2	SMAD specific E3 ubiquitin protein ligase 2		ISO	10	96,170,590	96,269,365	RGD:1624291	RGD
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		ISO	10	15,096,150	15,098,431	RGD:1624291	RGD
G	Tceb1	transcription elongation factor B (SIII), polypeptide 1		IEA	5	1,961,106	1,966,991	RGD:1600115	InterPro
G	Topors	topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase		ISO	5	57,663,121	57,676,619	RGD:1624291	RGD
G	Trpc4ap	transient receptor potential cation channel, subfamily C, member 4 associated protein		IEA	3	146,139,493	146,206,625	RGD:1600115	ENSEMBL
G	Trpc4ap	transient receptor potential cation channel, subfamily C, member 4 associated protein		ISO	3	146,139,493	146,206,625	RGD:1624291	RGD
G	Ttc3	tetratricopeptide repeat domain 3		ISO	11	34,617,072	34,659,043	RGD:1624291	RGD
G	Uba1y	ubiquitin-activating enzyme, Chr Y		TAS				RGD:724779	RGD
G	Uba6	ubiquitin-like modifier activating enzyme 6		ISO	14	23,666,102	23,729,920	RGD:1624291	RGD
G	Uba6	ubiquitin-like modifier activating enzyme 6		ISO	14	23,666,102	23,729,920	RGD:1624291	RGD
G	Uba6	ubiquitin-like modifier activating enzyme 6		IEA	14	23,666,102	23,729,920	RGD:1600115	ENSEMBL
G	Ubc	ubiquitin C		TAS	12	32,333,211	32,337,944	RGD:625388	RGD
G	Ubd	ubiquitin D		ISO	20	1,475,944	1,477,895	RGD:1624291	RGD
G	Ubd	ubiquitin D		ISO	20	1,475,944	1,477,895	RGD:1624291	RGD
G	Ubd	ubiquitin D		ISO	20	1,475,944	1,477,895	RGD:1624291	RGD
G	Ubd	ubiquitin D		ISS	20	1,475,944	1,477,895	RGD:1600115	UniProtKB
G	Ube2b	ubiquitin-conjugating enzyme E2B		IEP	10	37,509,322	37,523,900	RGD:1299378	RGD
G	Ube2b	ubiquitin-conjugating enzyme E2B		ISO	10	37,509,322	37,523,900	RGD:1624291	RGD
G	Ube2c	ubiquitin-conjugating enzyme E2C		ISO	3	155,800,357	155,802,757	RGD:1624291	RGD
G	Ube2c	ubiquitin-conjugating enzyme E2C		ISO	3	155,800,357	155,802,757	RGD:1624291	RGD
G	Ube2d1	ubiquitin-conjugating enzyme E2D 1		ISO	20	18,040,687	18,086,179	RGD:1624291	RGD
G	Ube2d1	ubiquitin-conjugating enzyme E2D 1		IEA	20	18,040,687	18,086,179	RGD:1600115	ENSEMBL
G	Ube2d3	ubiquitin-conjugating enzyme E2D 3		IDA	2	232,943,214	232,971,022	RGD:730002	RGD
G	Ube2g1	ubiquitin-conjugating enzyme E2G 1		TAS	10	59,495,501	59,576,926	RGD:634475	RGD
G	Ube2i	ubiquitin-conjugating enzyme E2I		TAS	10	14,509,948	14,524,551	RGD:730030	RGD
G	Ube2n	ubiquitin-conjugating enzyme E2N		TAS	7	32,719,959	32,750,002	RGD:724779	RGD
G	Ube2n	ubiquitin-conjugating enzyme E2N		ISO	7	32,719,959	32,750,002	RGD:1624291	RGD
G	Ube3a	ubiquitin protein ligase E3A		ISO	1	110,729,142	110,816,491	RGD:1624291	RGD
G	Ube4a	ubiquitination factor E4A		IEA	8	47,879,266	47,918,955	RGD:1600115	InterPro
G	Ube4b	ubiquitination factor E4B		ISO	5	166,406,498	166,508,716	RGD:1624291	RGD
G	Ube4b	ubiquitination factor E4B		IEA	5	166,406,498	166,508,716	RGD:1600115	InterPro
G	Ubr1	ubiquitin protein ligase E3 component n-recognin 1		ISO	3	107,632,668	107,746,611	RGD:1624291	RGD
G	Ubr1	ubiquitin protein ligase E3 component n-recognin 1		ISO	3	107,632,668	107,746,611	RGD:1624291	RGD
G	Ubr2	ubiquitin protein ligase E3 component n-recognin 2		ISO	9	9,165,363	9,247,261	RGD:1624291	RGD
G	Uchl1	ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)		IDA	14	44,114,392	44,124,947	RGD:70392	RGD
G	Uchl3	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)		IEA	15	85,628,490	85,670,420	RGD:1600115	InterPro
G	Uchl3-ps1	ubiquitin carboxyl-terminal esterase L3, pseudogene 1		IEA	3	163,941,240	163,942,122	RGD:1600115	InterPro
G	Uchl5	ubiquitin carboxyl-terminal hydrolase L5		IEA	13	57,605,912	57,643,050	RGD:1600115	InterPro
G	Uhrf2	ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase		IEA	1	233,777,723	233,841,343	RGD:1600115	ENSEMBL
G	Uhrf2	ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase		ISO	1	233,777,723	233,841,343	RGD:1624291	RGD
G	Usp1	ubiquitin specific peptidase 1		IEA	5	119,364,515	119,375,885	RGD:1600115	InterPro
G	Usp10	ubiquitin specific peptidase 10		IEA	19	50,202,951	50,244,677	RGD:1600115	InterPro
G	Usp11	ubiquitin specific peptidase 11		TAS	X	12,890,515	12,906,686	RGD:1304526	RGD
G	Usp12	ubiquitin specific peptidase 12		IEA	12	8,757,532	8,808,106	RGD:1600115	InterPro
G	Usp13	ubiquitin specific peptidase 13		IEA	2	119,006,687	119,116,188	RGD:1600115	InterPro
G	Usp14	ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase)		IEA	18	1,292,799	1,330,478	RGD:1600115	InterPro
G	Usp15	ubiquitin specific peptidase 15		IEA	7	62,871,167	62,961,405	RGD:1600115	InterPro
G	Usp16	ubiquitin specific peptidase 16		IEA	11	27,204,766	27,233,883	RGD:1600115	InterPro
G	Usp17l5	ubiquitin specific peptidase 17-like 5		IEA	1	162,371,236	162,374,792	RGD:1600115	InterPro
G	Usp18	ubiquitin specific peptidase 18		IEA	4	157,692,720	157,694,884	RGD:1600115	InterPro
G	Usp19	ubiquitin specific peptidase 19		IEA				RGD:1600115	InterPro
G	Usp2	ubiquitin specific peptidase 2		IEA	8	47,052,085	47,076,321	RGD:1600115	InterPro
G	Usp20	ubiquitin specific peptidase 20		IEA	3	10,048,393	10,080,966	RGD:1600115	InterPro
G	Usp21	ubiquitin specific peptidase 21		IEA	13	87,175,527	87,181,024	RGD:1600115	InterPro
G	Usp22	ubiquitin specific peptidase 22		IEA	10	47,303,727	47,327,738	RGD:1600115	InterPro
G	Usp24	ubiquitin specific peptidase 24		IEA	5	127,371,225	127,500,521	RGD:1600115	InterPro
G	Usp25	ubiquitin specific peptidase 25		IEA	11	15,799,829	15,907,792	RGD:1600115	InterPro
G	Usp26	ubiquitin specific peptidase 26		IEA	X	138,625,478	138,669,690	RGD:1600115	InterPro
G	Usp27x	ubiquitin specific peptidase 27, X-linked		IEA	X	27,189,208	27,199,805	RGD:1600115	InterPro
G	Usp28	ubiquitin specific peptidase 28		IEA	8	52,245,642	52,305,922	RGD:1600115	InterPro
G	Usp29	ubiquitin specific peptidase 29		IEA	1	65,272,956	65,326,368	RGD:1600115	InterPro
G	Usp3	ubiquitin specific peptidase 3		IEA	8	70,821,429	70,897,119	RGD:1600115	InterPro
G	Usp30	ubiquitin specific peptidase 30		IEA	12	43,536,736	43,560,425	RGD:1600115	InterPro
G	Usp31	ubiquitin specific peptidase 31		IEA	1	180,465,513	180,502,558	RGD:1600115	InterPro
G	Usp32	ubiquitin specific peptidase 32		IEA	10	73,256,761	73,374,747	RGD:1600115	InterPro
G	Usp33	ubiquitin specific peptidase 33		IEA	2	250,885,728	250,920,082	RGD:1600115	InterPro
G	Usp34	ubiquitin specific peptidase 34		IEA	14	103,990,220	104,426,186	RGD:1600115	InterPro
G	Usp35	ubiquitin specific peptidase 35		IEA	1	154,549,248	154,565,892	RGD:1600115	InterPro
G	Usp36	ubiquitin specific peptidase 36		IEA	10	108,264,874	108,296,384	RGD:1600115	InterPro
G	Usp37	ubiquitin specific peptidase 37		IEA	9	73,779,925	73,880,023	RGD:1600115	InterPro
G	Usp38	ubiquitin specific peptidase 38		IEA	19	28,847,283	28,879,605	RGD:1600115	InterPro
G	Usp39	ubiquitin specific peptidase 39		IEA	4	105,623,922	105,650,275	RGD:1600115	InterPro
G	Usp4	ubiquitin specific peptidase 4 (proto-oncogene)		IEA				RGD:1600115	InterPro
G	Usp42	ubiquitin specific peptidase 42		IEA	12	11,151,534	11,170,068	RGD:1600115	InterPro
G	Usp43	ubiquitin specific peptidase 43		IEA	10	54,591,669	54,653,842	RGD:1600115	InterPro
G	Usp45	ubiquitin specific peptidase 45		IEA	5	36,517,213	36,590,986	RGD:1600115	InterPro
G	Usp46	ubiquitin specific peptidase 46		IEA	14	36,537,951	36,609,397	RGD:1600115	InterPro
G	Usp47	ubiquitin specific peptidase 47		IEA	1	169,836,253	169,920,055	RGD:1600115	InterPro
G	Usp48	ubiquitin specific peptidase 48		IEA	5	156,351,117	156,418,283	RGD:1600115	InterPro
G	Usp49	ubiquitin specific peptidase 49		IEA	9	8,774,333	8,832,285	RGD:1600115	InterPro
G	Usp5	ubiquitin specific peptidase 5 (isopeptidase T)		IEA	4	160,937,706	160,952,769	RGD:1600115	InterPro
G	Usp50	ubiquitin specific peptidase 50		IEA	3	114,287,018	114,309,429	RGD:1600115	InterPro
G	Usp51	ubiquitin specific peptidase 51		IEA	X	38,541,807	38,544,854	RGD:1600115	InterPro
G	Usp54	ubiquitin specific peptidase 54		IEA	15	3,918,087	3,983,122	RGD:1600115	InterPro
G	Usp7	ubiquitin specific peptidase 7 (herpes virus-associated)		IEA	10	6,917,612	6,963,452	RGD:1600115	InterPro
G	Usp8	ubiquitin specific peptidase 8		IEA	3	114,237,065	114,284,543	RGD:1600115	InterPro
G	Usp9x	ubiquitin specific peptidase 9, X-linked		IEA	X	21,606,330	21,718,042	RGD:1600115	InterPro
G	Uspl1	ubiquitin specific peptidase like 1		IEA	12	6,318,581	6,345,858	RGD:1600115	InterPro
G	Vcp	valosin-containing protein		ISO	5	59,472,100	59,491,508	RGD:1624291	RGD
G	Znrf3	zinc and ring finger 3		ISO	14	85,927,245	85,982,249	RGD:1624291	RGD
ubiquitin-dependent SMAD protein catabolic process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Rnf111	ring finger protein 111		ISO	8	74,909,360	74,983,363	RGD:1624291	RGD
G	Rnf111	ring finger protein 111		IEA	8	74,909,360	74,983,363	RGD:1600115	ENSEMBL
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		IEA	12	9,950,304	10,042,391	RGD:1600115	ENSEMBL
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		ISO	12	9,950,304	10,042,391	RGD:1624291	RGD
G	Smurf1	SMAD specific E3 ubiquitin protein ligase 1		ISO	12	9,950,304	10,042,391	RGD:1624291	RGD
G	Smurf2	SMAD specific E3 ubiquitin protein ligase 2		IEA	10	96,170,590	96,269,365	RGD:1600115	ENSEMBL
G	Smurf2	SMAD specific E3 ubiquitin protein ligase 2		ISO	10	96,170,590	96,269,365	RGD:1624291	RGD
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		IEA	10	15,096,150	15,098,431	RGD:1600115	ENSEMBL
G	Stub1	STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase		ISO	10	15,096,150	15,098,431	RGD:1624291	RGD
G	Tgfb1i1	transforming growth factor beta 1 induced transcript 1		ISO	1	187,504,715	187,511,512	RGD:1624291	RGD
G	Tgfb1i1	transforming growth factor beta 1 induced transcript 1		IEA	1	187,504,715	187,511,512	RGD:1600115	ENSEMBL
G	Wnt1	wingless-type MMTV integration site family, member 1		ISO	7	137,557,836	137,561,883	RGD:1624291	RGD
G	Wnt1	wingless-type MMTV integration site family, member 1		IEA	7	137,557,836	137,561,883	RGD:1600115	ENSEMBL

Term paths to the root

Path 1
Term	Annotations
biological_process	135967
metabolic process	36390
primary metabolic process	29834
protein metabolic process	10746
protein catabolic process	1036