ECRG4 (ECRG4 augurin precursor) - Rat Genome Database

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Gene: ECRG4 (ECRG4 augurin precursor) Pan paniscus
Analyze
Symbol: ECRG4
Name: ECRG4 augurin precursor
RGD ID: 11920505
Description: ENCODES a protein that exhibits neuropeptide hormone activity (ortholog); INVOLVED IN anaphase-promoting complex-dependent catabolic process (ortholog); cellular senescence (ortholog); G1 to G0 transition (ortholog); FOUND IN apical plasma membrane (ortholog); dense core granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: augurin; augurin-like; C2AH2orf40; chromosome 2A C2orf40 homolog; chromosome 2A open reading frame, human C2orf40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,649,852 - 21,664,951 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A21,652,519 - 21,667,716 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A95,762,149 - 95,774,834 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A107,141,822 - 107,152,977 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A107,140,895 - 107,152,967 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ECRG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,649,852 - 21,664,951 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A21,652,519 - 21,667,716 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A95,762,149 - 95,774,834 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A107,141,822 - 107,152,977 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A107,140,895 - 107,152,967 (+)Ensemblpanpan1.1panPan2
ECRG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382106,063,241 - 106,078,155 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2106,063,246 - 106,078,155 (+)EnsemblGRCh38hg38GRCh38
GRCh372106,682,144 - 106,694,611 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362106,048,545 - 106,061,040 (+)NCBINCBI36Build 36hg18NCBI36
Celera2100,882,549 - 100,895,038 (+)NCBICelera
Cytogenetic Map2q12.2NCBI
HuRef2100,451,504 - 100,464,588 (+)NCBIHuRef
CHM1_12106,687,184 - 106,699,693 (+)NCBICHM1_1
T2T-CHM13v2.02106,524,934 - 106,539,858 (+)NCBIT2T-CHM13v2.0
Ecrg4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,769,762 - 43,781,724 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl143,769,762 - 43,781,738 (+)EnsemblGRCm39 Ensembl
GRCm38143,730,602 - 43,742,564 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,730,602 - 43,742,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv37143,787,447 - 43,799,409 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36143,675,217 - 43,687,093 (+)NCBIMGSCv36mm8
Celera144,080,967 - 44,092,916 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.44NCBI
Ecrg4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8953,485,040 - 53,504,691 (+)NCBIGRCr8
mRatBN7.2945,992,954 - 46,012,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,992,954 - 46,012,595 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx954,505,053 - 54,524,710 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0959,627,854 - 59,647,511 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0957,908,081 - 57,927,739 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0950,526,811 - 50,548,056 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl950,526,811 - 50,548,046 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0950,191,450 - 50,212,695 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4942,931,051 - 42,950,605 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1942,932,613 - 42,952,019 (+)NCBI
Celera943,707,081 - 43,725,077 (+)NCBICelera
Cytogenetic Map9q22NCBI
Ecrg4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,645,750 - 10,659,388 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547010,646,585 - 10,655,311 (+)NCBIChiLan1.0ChiLan1.0
ECRG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11037,423,183 - 37,432,961 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1037,423,183 - 37,433,322 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1037,347,657 - 37,357,428 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01038,272,970 - 38,282,714 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1038,272,977 - 38,282,878 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11038,005,101 - 38,014,873 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01038,281,847 - 38,291,645 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01038,476,371 - 38,486,148 (-)NCBIUU_Cfam_GSD_1.0
ECRG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl348,960,429 - 48,971,511 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1348,960,413 - 48,971,878 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2351,051,816 - 51,062,808 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ECRG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1149,686,930 - 9,698,708 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl149,687,043 - 9,699,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041177,409,300 - 177,421,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ecrg4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247499,947,188 - 9,956,983 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247499,947,366 - 9,956,876 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000035238   ⟹   ENSPPAP00000012572
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A107,140,895 - 107,152,748 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000035239   ⟹   ENSPPAP00000012573
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A107,144,733 - 107,152,967 (+)Ensembl
RefSeq Acc Id: XM_034953608   ⟹   XP_034809499
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,649,852 - 21,662,889 (-)NCBI
NHGRI_mPanPan12A21,652,543 - 21,665,243 (-)NCBI
Mhudiblu_PPA_v02A95,762,149 - 95,774,834 (-)NCBI
RefSeq Acc Id: XM_055107494   ⟹   XP_054963469
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,649,852 - 21,661,517 (-)NCBI
NHGRI_mPanPan12A21,652,519 - 21,664,282 (-)NCBI
RefSeq Acc Id: XM_055107495   ⟹   XP_054963470
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,649,852 - 21,664,951 (-)NCBI
NHGRI_mPanPan12A21,652,519 - 21,667,716 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034809499 (Get FASTA)   NCBI Sequence Viewer  
  XP_054963469 (Get FASTA)   NCBI Sequence Viewer  
  XP_054963470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012572.1
  ENSPPAP00000012573.1
Reference Protein Sequences
RefSeq Acc Id: XP_034809499   ⟸   XM_034953608
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AAW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000012572   ⟸   ENSPPAT00000035238
RefSeq Acc Id: ENSPPAP00000012573   ⟸   ENSPPAT00000035239
RefSeq Acc Id: XP_054963470   ⟸   XM_055107495
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054963469   ⟸   XM_055107494
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029469 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035238.1 UniProtKB/TrEMBL
  ENSPPAT00000035239.1 UniProtKB/TrEMBL
InterPro Augurin UniProtKB/TrEMBL
NCBI Gene C2AH2orf40 ENTREZGENE
PANTHER AUGURIN UniProtKB/TrEMBL
  PTHR31613 UniProtKB/TrEMBL
Pfam Augurin UniProtKB/TrEMBL
UniProt A0A2R9A5K3_PANPA UniProtKB/TrEMBL
  A0A2R9AAW2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-23 ECRG4  ECRG4 augurin precursor  C2AH2orf40  chromosome 2A C2orf40 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C2AH2orf40  chromosome 2A C2orf40 homolog    chromosome 2A open reading frame, human C2orf40  Symbol and/or name change 5135510 APPROVED