RNF122 (ring finger protein 122) - Rat Genome Database

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Gene: RNF122 (ring finger protein 122) Pan paniscus
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Symbol: RNF122
Name: ring finger protein 122
RGD ID: 12003521
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN negative regulation of mitochondrial membrane potential (inferred); positive regulation of apoptotic process (inferred); proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); FOUND IN cytoplasm (inferred); membrane (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2752,122,444 - 52,141,936 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1827,837,787 - 27,857,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0832,862,364 - 32,881,660 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1830,049,204 - 30,068,352 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl830,049,204 - 30,068,355 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
membrane  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
RNF122
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2752,122,444 - 52,141,936 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1827,837,787 - 27,857,543 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0832,862,364 - 32,881,660 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1830,049,204 - 30,068,352 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl830,049,204 - 30,068,355 (-)Ensemblpanpan1.1panPan2
RNF122
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38833,547,754 - 33,567,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl833,547,754 - 33,567,128 (-)EnsemblGRCh38hg38GRCh38
GRCh37833,405,272 - 33,424,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36833,524,815 - 33,544,185 (-)NCBINCBI36Build 36hg18NCBI36
Build 34833,524,814 - 33,544,185NCBI
Celera832,354,976 - 32,374,346 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef831,937,179 - 31,956,552 (-)NCBIHuRef
CHM1_1833,606,757 - 33,626,126 (-)NCBICHM1_1
T2T-CHM13v2.0833,819,016 - 33,838,397 (-)NCBIT2T-CHM13v2.0
Rnf122
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39831,601,855 - 31,623,346 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl831,601,848 - 31,621,510 (+)EnsemblGRCm39 Ensembl
GRCm38831,111,827 - 31,133,318 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl831,111,820 - 31,131,482 (+)EnsemblGRCm38mm10GRCm38
MGSCv37832,222,318 - 32,241,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36832,577,781 - 32,597,417 (+)NCBIMGSCv36mm8
Celera832,636,835 - 32,656,850 (+)NCBICelera
Cytogenetic Map8A3NCBI
cM Map817.97NCBI
Rnf122
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81667,712,936 - 67,730,479 (-)NCBIGRCr8
mRatBN7.21661,009,879 - 61,027,429 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1661,009,879 - 61,027,448 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1666,325,271 - 66,342,813 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01669,739,776 - 69,757,318 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01664,966,230 - 64,983,651 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01664,766,878 - 64,787,308 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1664,766,903 - 64,784,433 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01664,424,229 - 64,429,199 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41664,918,701 - 64,926,204 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1659,014,621 - 59,019,591 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
Rnf122
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554639,684,068 - 9,699,939 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554639,684,546 - 9,699,939 (-)NCBIChiLan1.0ChiLan1.0
RNF122
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11631,132,478 - 31,145,642 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1631,135,971 - 31,144,909 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1631,656,051 - 31,670,766 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01633,158,385 - 33,173,092 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11631,254,566 - 31,269,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01631,833,629 - 31,848,331 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01631,872,341 - 31,887,067 (+)NCBIUU_Cfam_GSD_1.0
Rnf122
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494354,125,361 - 54,139,844 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936766386,176 - 399,234 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936766385,769 - 400,229 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF122
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21559,504,202 - 59,520,457 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF122
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1831,630,559 - 31,650,321 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl831,630,244 - 31,650,398 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605210,400,752 - 10,421,285 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf122
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478010,391,180 - 10,408,755 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478010,391,328 - 10,415,351 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000055121   ⟹   ENSPPAP00000032255
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl830,049,204 - 30,068,355 (-)Ensembl
RefSeq Acc Id: XM_003830748   ⟹   XP_003830796
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2752,122,444 - 52,141,936 (-)NCBI
NHGRI_mPanPan1827,837,788 - 27,857,543 (-)NCBI
Mhudiblu_PPA_v0832,862,365 - 32,881,660 (-)NCBI
PanPan1.1830,049,204 - 30,068,352 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008956172   ⟹   XP_008954420
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2752,122,444 - 52,141,399 (-)NCBI
NHGRI_mPanPan1827,837,787 - 27,857,053 (-)NCBI
Mhudiblu_PPA_v0832,862,364 - 32,880,677 (-)NCBI
PanPan1.1830,049,210 - 30,067,098 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830796 (Get FASTA)   NCBI Sequence Viewer  
  XP_008954420 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000032255
  ENSPPAP00000032255.1
RefSeq Acc Id: XP_003830796   ⟸   XM_003830748
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BUX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008954420   ⟸   XM_008956172
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSPPAP00000032255   ⟸   ENSPPAT00000055121
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039012 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055121.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro HRD1_E3_ubiq-ligases UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100970877 UniProtKB/TrEMBL
NCBI Gene RNF122 ENTREZGENE
PANTHER RING FINGER PROTEIN 122 UniProtKB/TrEMBL
  RING ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A2R9BUX3 ENTREZGENE, UniProtKB/TrEMBL