SYVN1 (synoviolin 1) - Rat Genome Database

Name: SYVN1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SYVN1 (synoviolin 1) Pan paniscus

Analyze

Symbol:

SYVN1

Name:

synoviolin 1

RGD ID:

11997785

Description:

ENCODES a protein that exhibits ATPase binding (inferred); metal ion binding (inferred); protein-folding chaperone binding (inferred); INVOLVED IN ERAD pathway (ortholog); immature B cell differentiation (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase synoviolin

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYVN1 (synoviolin 1)	NCBI	Ortholog
Mus musculus (house mouse):	Syvn1 (synovial apoptosis inhibitor 1, synoviolin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Syvn1 (synoviolin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Syvn1 (synoviolin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYVN1 (synoviolin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Syvn1 (synoviolin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYVN1 (synoviolin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYVN1 (synoviolin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Syvn1 (synoviolin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,457 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	67,403,088 - 67,410,426 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	60,489,626 - 60,496,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	63,828,035 - 63,835,578 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	63,829,138 - 63,834,364 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

epilepsy (ISO)

genetic disease (ISO)

glycogen storage disease V (ISO)

high grade glioma (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ERAD pathway (IEA,ISO)

immature B cell differentiation (ISO)

in utero embryonic development (ISO)

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ISO)

negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (IEA,ISO)

protein catabolic process (ISO)

protein K48-linked ubiquitination (IEA)

protein stabilization (IEA)

protein ubiquitination (IEA)

retrograde protein transport, ER to cytosol (IEA)

ubiquitin-dependent protein catabolic process (IEA)

Cellular Component

Derlin-1 retrotranslocation complex (IEA)

endoplasmic reticulum (IEA,ISO)

endoplasmic reticulum membrane (IEA)

endoplasmic reticulum quality control compartment (IEA)

Hrd1p ubiquitin ligase ERAD-L complex (IEA)

membrane (IEA)

nucleoplasm (IEA)

smooth endoplasmic reticulum (IEA)

Molecular Function

ATPase binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

protein-folding chaperone binding (IEA)

ubiquitin protein ligase activity (IEA)

ubiquitin-specific protease binding (IEA)

unfolded protein binding (IEA)

References

Genomics

Comparative Map Data

SYVN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,457 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	67,403,088 - 67,410,426 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	60,489,626 - 60,496,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	63,828,035 - 63,835,578 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	63,829,138 - 63,834,364 (-)	Ensembl	panpan1.1		panPan2

SYVN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	65,127,279 - 65,134,519 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	65,121,780 - 65,134,532 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	64,894,751 - 64,901,990 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	64,651,327 - 64,658,579 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	62,221,052 - 62,228,305 (-)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,221,343 - 61,228,995 (-)	NCBI		HuRef
CHM1_1	11	64,778,428 - 64,785,681 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	65,120,558 - 65,127,829 (-)	NCBI		T2T-CHM13v2.0

Syvn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	6,096,586 - 6,103,748 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	6,096,606 - 6,103,742 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	6,046,576 - 6,053,718 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	6,046,576 - 6,053,712 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	6,046,576 - 6,053,718 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	6,046,662 - 6,053,709 (+)	NCBI		MGSCv36	mm8
Celera	19	5,917,424 - 5,924,577 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

Syvn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,766,736 - 212,775,426 (+)	NCBI		GRCr8
mRatBN7.2	1	203,339,235 - 203,346,137 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,339,619 - 203,346,152 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,692,443 - 211,698,961 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,784,985 - 218,791,503 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,476,053 - 211,482,571 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,409,281 - 221,416,229 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,409,271 - 221,417,886 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,344,759 - 228,351,661 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	208,684,460 - 208,690,978 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	208,837,919 - 208,844,428 (+)	NCBI
Celera	1	200,873,320 - 200,879,838 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Syvn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	20,068,848 - 20,073,850 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	20,067,933 - 20,074,947 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYVN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	52,061,284 - 52,068,672 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	52,060,347 - 52,067,582 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,668,558 - 50,676,741 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	53,102,565 - 53,110,749 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	53,102,421 - 53,110,747 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	52,197,954 - 52,206,134 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,771,728 - 51,779,906 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,566,393 - 52,574,578 (+)	NCBI		UU_Cfam_GSD_1.0

Syvn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,793,451 - 7,801,048 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	4,236,188 - 4,243,394 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	4,235,779 - 4,243,395 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYVN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	7,059,462 - 7,066,601 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	7,059,444 - 7,066,617 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	6,191,492 - 6,198,640 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYVN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	9,093,657 - 9,101,245 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	9,094,592 - 9,100,213 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	106,474,518 - 106,482,553 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syvn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	21,270,841 - 21,275,653 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	21,269,909 - 21,276,739 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003828607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008954042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000027068 ⟹ ENSPPAP00000006176

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	63,829,138 - 63,834,364 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000027072 ⟹ ENSPPAP00000006178

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	63,829,138 - 63,834,364 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000027081 ⟹ ENSPPAP00000006182

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	63,829,138 - 63,834,364 (-)	Ensembl

RefSeq Acc Id:

XM_003828607 ⟹ XP_003828655

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,457 (-)	NCBI
NHGRI_mPanPan1	11	67,403,088 - 67,410,426 (-)	NCBI
Mhudiblu_PPA_v0	11	60,489,626 - 60,496,875 (-)	NCBI
PanPan1.1	11	63,828,035 - 63,835,578 (-)	NCBI

Sequence:

show sequence

AGTCCGAGGAGGCCACTCAGCGCAGGGGCCATACCATCTGTGACTAATAAATAATAGGGGGACC
TCCGACTCCCCCCTGTTGCCTTATTACCTTCCGACCACCTCTCGGACCTCTTGCCCAGCCCTTC
CCCGTAGACAGCGCCCCAGATACGGTGGTGACACCATTGCTATGGGCCCACGTAGGGCGCAGTG
CGAGCCAGGGCAGGACGCACTTGGTACGACCCACGCCGCGCCCCGCGCCGCCGGAAGTGAGGTG
TCTGACCCCCGAAGTTCCGGTTCGCAGGGGGTGGGGAGTGTTGTTAACCGGAGGGGCAGCCGCA
GTCGCGCGGATTGAGCGGGCTCGCGGCGCTGGGTTCCTGGTCTCCGGGCCAGGGCAATGTTCCG
CACGGCAGTGATGATGGCGGCCAGCCTGGCGCTGACCGGGGCTGTGGTGGCTCACGCCTACTAC
CTCAAACACCAGTTCTACCCCACTGTGGTGTACCTGACCAAGTCCAGCCCCAGCATGGCAGTCC
TGTACATCCAGGCCTTTGTCCTTGTCTTCCTTCTGGGCAAGGTGATGGGCAAGGTGTTCTTTGG
GCAACTGAGGGCAGCAGAGATGGAGCACCTTCTGGAACGTTCCTGGTACGCCGTCACAGAGACT
TGTCTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCCCGCTTTGTTGCACTCTTCACTCTTC
TTCTCTTCCTCAAATGTTTCCACTGGCTGGCTGAGGACCGTGTGGACTTTATGGAACGCAGCCC
CAACATCTCCTGGCTCTTTCACTGCCGCATTGTCTCTCTTATGTTCCTCCTGGGCATCCTGGAC
TTCCTCTTCGTCAGCCACGCCTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTGT
TTGGCTTTGAGTATGCCATCCTGATGACGATGGTGCTCACCATCTTCATCAAGTATGTGCTGCA
CTCCGTGGACCTCCAGAGTGAGAACCCCTGGGACAACAAGGCTGTGTACATGCTCTACACAGAG
CTGTTTACAGGCTTCATCAAGGTTCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGC
ACACCTTCCCACTCTTTGCCATCCGGCCCATGTACCTGGCCATGAGACAGTTCAAGAAAGCTGT
GACAGATGCCATCATGTCTCGCCGAGCTATCCGCAACATGAACACCCTGTATCCAGATGCCACC
CCAGAGGAGCTCCAGGCAATGGACAATGTCTGCATCATCTGCCGAGAAGAGATGGTGACTGGTG
CCAAGAGACTGCCCTGCAACCACATTTTCCATACCAGCTGCCTGCGCTCCTGGTTCCAGCGGCA
GCAGACCTGCCCCACCTGCCGTATGGATGTCCTTCGTGCATCGCTGCCAGCGCAGTCACCACCA
CCCCCGGAGCCTGCGGATCAGGGGCCACCCCCTGCCCCCCACCCCCCACCACTCTTGCCTCAGC
CCCCCAACTTCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCC
CATGGGCCCCTTTCCACCTGTCCCGCCTCCCCCCAGCTCAGGAGAGGCTGTGGCTCCTCCATCC
ACCAGTGCAGCAGCCCTTTCTCGGCCCAGTGGAGCAGCTACAACCACAGCTGCTGGCACCAGTG
CTGCTGCTGCTTCTGCTTCTGCCACAGCATCTGGCCCAGGCTCTGGCTCTGCCCCAGAGGCTGG
CCCTGCCCCTGGTTTCCCCTTCCCTCCTCCCTGGATGGGTATGCCCCTGCCTCCACCCTTTGCC
TTCCCCCCAATGCCCGTGCCCCCTGCGGGCTTTGCTGGGCTGACCCCAGAGGAGCTACGAGCTC
TGGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGCCTGCGTAACATCCACACATT
GCTGGACGCCGCCATGCTGCAGATCAACCAGTACCTCACCGTGCTGGCCTCCTTGGGGCCCCCC
GGCCTGCCACTTCAGTCAGCTCCACTGAGGAGACTGCCACTACAGTTGTTGCTGCTGCCTCCTC
CACCAGCATCCCTAGCTCAGAGGCCACGACCCCAACCCCAGGAGCCTCCCCACCAGCCCCTGAA
ATGGAAAGGCCTCCAGCTCCTGAGTCAGTGGGCACAGAGGAGATGCCTGAGGATGGAGAGCCCG
ATGCAGCAGAGCTCCGCCGGCGCCGCCTGCAGAAGCTGGAGTCTCCTGTTGCCCACTGACACTG
CCCCAGCCCAGCCCCAGCCCCTGCTCTTTTGAGCAGCCCTCGCTGGAACATGTCCTGCCACCAA
GTGCCAGCTCCCTCTCTGTCTGCACCAGGGAGTAGTACCCCCAGCTCTGAGAAAGAGGCGGCAT
CCCCTAGGCCAAGTGGAAAGAGGCTGGGGTTCCCATTTGACTCCAGTCCCAGGCAGCCATGGGG
ATCTCGGGTCAGTTCCAGCCTTCCTCTCCAACTCTTCAGCCCTGTGTTCTGCTGGGGCCATGAA
GGCAGAAGGTTTAGCCTCTGAGAAGCCCTCTTCTTCCCCCACCCCTTTCCAGGAGAAGGGGCTG
CCCCTCCAAGCCCTACTTGTATGTGCGGAGTCACACTGCAGTGCCGAACAGTATTAGCTCCCGT
TCCCAAGTGTGGACTCCAGAGGGGCTGGAGGCAAGCTATGAACTTGCTCGCTGGCCCACCCCTA
AGACTGGTACCCATTTCCTTTTCTTACCCTGATCTCCCCAGAAGCCTCTTGTGGTGGTGGCTGT
GCCCCCTATGCCCTGTGGCATTTCTGCGTCTTACTGGCAACCACACAACTCAGGGAAAGGAATG
CCTGGGAGTGGGGGTGCAGGCGGGCAGCACTGAGGGACCCTGCCCCGCCCCTCCCCCCAGGCCC
CTTTCCCCTGCAGCTTCTCAAGTGAGACTGACCTGTCTCACCCAGCAGCCACTGCCCAGCCGCA
CTCCAGGCAAGGGCCAGTGCGCCTGCTCCTGACCACTGCAATCCCAGCGCCCAAGGAAGGCCAC
TTCTCAACTGGCAGAACCTCTGAAGTTTAGAATTGGAATTACTTCCTTACTAGTGTCTTTTGGC
TTAAATTTTGTCTTTTGAAGTTGAATGCTTAATCCCGGGAAAGAGGAACAGGAGTGCCAGACTC
CTGGTCTTTCCAGTTTAGAAAAGGCTCTGTGCCAAGGAGGGACCACAGGAGCTGGGACCTGCCT
GCCCCTGTCTTTTCCCCTTGGTTTTGTGTTACAAGAGTTGTTGGAGACAGTTTCAGATGATTAT
TTAATTTGTAAATATTGTACAAATTTTAATAGCTTAAATTGTATATACAGCCAAATAAAAACTT
GCATTAACAA

hide sequence

RefSeq Acc Id:

XM_008954042 ⟹ XP_008952290

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,457 (-)	NCBI
NHGRI_mPanPan1	11	67,403,088 - 67,410,292 (-)	NCBI
Mhudiblu_PPA_v0	11	60,489,626 - 60,496,888 (-)	NCBI
PanPan1.1	11	63,828,035 - 63,835,296 (-)	NCBI

Sequence:

show sequence

GGGGGTGGGGAGTGTTGTTAACCGGAGGGGCAGCCGCAGTCGCGCGGATTGAGCGGGCTCGCGG
CGCTGGGTTCCTGGTCTCCGGGCCAGGGCAATGTTCCGCACGGCAGTGATGATGGCGGCCAGCC
TGGCGCTGACCGGGGCTGTGGTGGCTCACGCCTACTACCTCAAACACCAGTTCTACCCCACTGT
GGTGTACCTGACCAAGTCCAGCCCCAGCATGGCAGTCCTGTACATCCAGGCCTTTGTCCTTGTC
TTCCTTCTGGGCAAGGTGATGGGCAAGGTGTTCTTTGGGCAACTGAGGGCAGCAGAGATGGAGC
ACCTTCTGGAACGTTCCTGGTACGCCGTCACAGAGACTTGTCTGGCCTTCACCGTTTTTCGGGA
TGACTTCAGCCCCCGCTTTGTTGCACTCTTCACTCTTCTTCTCTTCCTCAAATGTTTCCACTGG
CTGGCTGAGGACCGTGTGGACTTTATGGAACGCAGCCCCAACATCTCCTGGCTCTTTCACTGCC
GCATTGTCTCTCTTATGTTCCTCCTGGGCATCCTGGACTTCCTCTTCGTCAGCCACGCCTATCA
CAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTGTTTGGCTTTGAGTATGCCATCCTGATG
ACGATGGTGCTCACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGTGAGAACC
CCTGGGACAACAAGGCTGTGTACATGCTCTACACAGAGCTGTTTACAGGCTTCATCAAGGTTCT
GCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACCTTCCCACTCTTTGCCATCCGG
CCCATGTACCTGGCCATGAGACAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAG
CTATCCGCAACATGAACACCCTGTATCCAGATGCCACCCCAGAGGAGCTCCAGGCAATGGACAA
TGTCTGCATCATCTGCCGAGAAGAGATGGTGACTGGTGCCAAGAGACTGCCCTGCAACCACATT
TTCCATACCAGCTGCCTGCGCTCCTGGTTCCAGCGGCAGCAGACCTGCCCCACCTGCCGTATGG
ATGTCCTTCGTGCATCGCTGCCAGCGCAGTCACCACCACCCCCGGAGCCTGCGGATCAGGGGCC
ACCCCCTGCCCCCCACCCCCCACCACTCTTGCCTCAGCCCCCCAACTTCCCCCAGGGCCTCCTG
CCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCCATGGGCCCCTTTCCACCTGTCCCGC
CTCCCCCCAGCTCAGGAGAGGCTGTGGCTCCTCCATCCACCAGTGCAGCCCTTTCTCGGCCCAG
TGGAGCAGCTACAACCACAGCTGCTGGCACCAGTGCTGCTGCTGCTTCTGCTTCTGCCACAGCA
TCTGGCCCAGGCTCTGGCTCTGCCCCAGAGGCTGGCCCTGCCCCTGGTTTCCCCTTCCCTCCTC
CCTGGATGGGTATGCCCCTGCCTCCACCCTTTGCCTTCCCCCCAATGCCCGTGCCCCCTGCGGG
CTTTGCTGGGCTGACCCCAGAGGAGCTACGAGCTCTGGAGGGCCATGAGCGGCAGCACCTGGAG
GCCCGGCTGCAGAGCCTGCGTAACATCCACACATTGCTGGACGCCGCCATGCTGCAGATCAACC
AGTACCTCACCGTGCTGGCCTCCTTGGGGCCCCCCGGCCTGCCACTTCAGTCAGCTCCACTGAG
GAGACTGCCACTACAGTTGTTGCTGCTGCCTCCTCCACCAGCATCCCTAGCTCAGAGGCCACGA
CCCCAACCCCAGGAGCCTCCCCACCAGCCCCTGAAATGGAAAGGCCTCCAGCTCCTGAGTCAGT
GGGCACAGAGGAGATGCCTGAGGATGGAGAGCCCGATGCAGCAGAGCTCCGCCGGCGCCGCCTG
CAGAAGCTGGAGTCTCCTGTTGCCCACTGACACTGCCCCAGCCCAGCCCCAGCCCCTGCTCTTT
TGAGCAGCCCTCGCTGGAACATGTCCTGCCACCAAGTGCCAGCTCCCTCTCTGTCTGCACCAGG
GAGTAGTACCCCCAGCTCTGAGAAAGAGGCGGCATCCCCTAGGCCAAGTGGAAAGAGGCTGGGG
TTCCCATTTGACTCCAGTCCCAGGCAGCCATGGGGATCTCGGGTCAGTTCCAGCCTTCCTCTCC
AACTCTTCAGCCCTGTGTTCTGCTGGGGCCATGAAGGCAGAAGGTTTAGCCTCTGAGAAGCCCT
CTTCTTCCCCCACCCCTTTCCAGGAGAAGGGGCTGCCCCTCCAAGCCCTACTTGTATGTGCGGA
GTCACACTGCAGTGCCGAACAGTATTAGCTCCCGTTCCCAAGTGTGGACTCCAGAGGGGCTGGA
GGCAAGCTATGAACTTGCTCGCTGGCCCACCCCTAAGACTGGTACCCATTTCCTTTTCTTACCC
TGATCTCCCCAGAAGCCTCTTGTGGTGGTGGCTGTGCCCCCTATGCCCTGTGGCATTTCTGCGT
CTTACTGGCAACCACACAACTCAGGGAAAGGAATGCCTGGGAGTGGGGGTGCAGGCGGGCAGCA
CTGAGGGACCCTGCCCCGCCCCTCCCCCCAGGCCCCTTTCCCCTGCAGCTTCTCAAGTGAGACT
GACCTGTCTCACCCAGCAGCCACTGCCCAGCCGCACTCCAGGCAAGGGCCAGTGCGCCTGCTCC
TGACCACTGCAATCCCAGCGCCCAAGGAAGGCCACTTCTCAACTGGCAGAACCTCTGAAGTTTA
GAATTGGAATTACTTCCTTACTAGTGTCTTTTGGCTTAAATTTTGTCTTTTGAAGTTGAATGCT
TAATCCCGGGAAAGAGGAACAGGAGTGCCAGACTCCTGGTCTTTCCAGTTTAGAAAAGGCTCTG
TGCCAAGGAGGGACCACAGGAGCTGGGACCTGCCTGCCCCTGTCTTTTCCCCTTGGTTTTGTGT
TACAAGAGTTGTTGGAGACAGTTTCAGATGATTATTTAATTTGTAAATATTGTACAAATTTTAA
TAGCTTAAATTGTATATACAGCCAAATAAAAACTTGCATTAACAA

hide sequence

RefSeq Acc Id:

XM_063608555 ⟹ XP_063464625

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,457 (-)	NCBI

RefSeq Acc Id:

XM_063608556 ⟹ XP_063464626

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,457 (-)	NCBI

RefSeq Acc Id:

XM_063608557 ⟹ XP_063464627

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,457 (-)	NCBI

RefSeq Acc Id:

XM_063608558 ⟹ XP_063464628

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	66,360,131 - 66,367,291 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003828655	(Get FASTA)	NCBI Sequence Viewer
	XP_008952290	(Get FASTA)	NCBI Sequence Viewer
	XP_063464625	(Get FASTA)	NCBI Sequence Viewer
	XP_063464626	(Get FASTA)	NCBI Sequence Viewer
	XP_063464627	(Get FASTA)	NCBI Sequence Viewer
	XP_063464628	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000006176.1
	ENSPPAP00000006178.1
	ENSPPAP00000006182.1

RefSeq Acc Id:	XP_008952290 ⟸ XM_008954042
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R8ZMK6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKV FFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFME RSPNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAILMTMVLTIFIKY VLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFK KAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWF QRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPL WPPMGPFPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSAAAASASATASGPGSGSAPE AGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHERQHLEARLQSLRNIH TLLDAAMLQINQYLTVLASLGPPGLPLQSAPLRRLPLQLLLLPPPPASLAQRPRPQPQEPPHQP LKWKGLQLLSQWAQRRCLRMESPMQQSSAGAACRSWSLLLPTDTAPAQPQPLLF hide sequence

RefSeq Acc Id:	XP_003828655 ⟸ XM_003828607
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R8ZQ94 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKV FFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFME RSPNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAILMTMVLTIFIKY VLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFK KAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWF QRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPL WPPMGPFPPVPPPPSSGEAVAPPSTSAAALSRPSGAATTTAAGTSAAAASASATASGPGSGSAP EAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHERQHLEARLQSLRNI HTLLDAAMLQINQYLTVLASLGPPGLPLQSAPLRRLPLQLLLLPPPPASLAQRPRPQPQEPPHQ PLKWKGLQLLSQWAQRRCLRMESPMQQSSAGAACRSWSLLLPTDTAPAQPQPLLF hide sequence

RefSeq Acc Id:

ENSPPAP00000006176 ⟸ ENSPPAT00000027068

RefSeq Acc Id:

ENSPPAP00000006182 ⟸ ENSPPAT00000027081

RefSeq Acc Id:

ENSPPAP00000006178 ⟸ ENSPPAT00000027072

RefSeq Acc Id:	XP_063464626 ⟸ XM_063608556
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063464627 ⟸ XM_063608557
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063464625 ⟸ XM_063608555
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063464628 ⟸ XM_063608558
- Peptide Label:	isoform X1

Protein Domains

RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000024469	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000027068.1	UniProtKB/TrEMBL
	ENSPPAT00000027072.1	UniProtKB/TrEMBL
	ENSPPAT00000027081.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	SYVN1	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE SYNOVIOLIN	UniProtKB/TrEMBL
	RING ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	zf-RING_2	UniProtKB/TrEMBL
PRINTS	PRICHEXTENSN	UniProtKB/TrEMBL
PROSITE	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A2R8ZMK6	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZQ94	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZTJ1_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar