Notch2 (notch receptor 2) - Rat Genome Database

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Gene: Notch2 (notch receptor 2) Rattus norvegicus
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Symbol: Notch2
Name: notch receptor 2
RGD ID: 3188
Description: Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; NF-kappaB binding activity; and cis-regulatory region sequence-specific DNA binding activity. Involved in cell fate determination; tissue regeneration; and wound healing. Is active in glutamatergic synapse and postsynaptic density membrane. Human ortholog(s) of this gene implicated in Alagille syndrome and Hajdu-Cheney syndrome. Orthologous to human NOTCH2 (notch receptor 2); PARTICIPATES IN Notch signaling pathway; Notch signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: neurogenic locus notch homolog protein 2; notch 2; notch gene homolog 2; notch gene homolog 2 (Drosophila); Notch homolog 2; Notch homolog 2 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82188,299,336 - 188,432,823 (+)NCBIGRCr8
mRatBN7.22185,610,594 - 185,744,088 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2185,610,589 - 185,744,088 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2193,258,974 - 193,392,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02191,067,260 - 191,200,638 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02185,891,558 - 186,025,066 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02200,187,184 - 200,320,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2200,187,179 - 200,320,215 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,597,473 - 207,599,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02219,662,511 - 219,793,306 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42192,839,350 - 192,986,589 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2178,101,416 - 178,234,556 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methyladenine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-naphthoflavone  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
androgen antagonist  (EXP)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
buspirone  (EXP)
Butylparaben  (EXP)
butyric acid  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calciol  (EXP)
carbamazepine  (ISO)
chlorpyrifos  (EXP,ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clozapine  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cypermethrin  (EXP)
DAPT  (EXP,ISO)
DDE  (EXP)
deguelin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dieldrin  (EXP,ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
entinostat  (ISO)
enzacamene  (EXP)
enzalutamide  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
folic acid  (ISO)
genistein  (EXP)
gentamycin  (EXP)
indometacin  (ISO)
lead diacetate  (ISO)
lead(0)  (EXP)
leflunomide  (EXP)
linuron  (EXP)
melatonin  (ISO)
methoxychlor  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
monocrotaline  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
ochratoxin A  (ISO)
omacetaxine mepesuccinate  (ISO)
oxaliplatin  (EXP)
oxycodone  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
phenethyl caffeate  (EXP)
phenethyl isothiocyanate  (ISO)
pirinixic acid  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
progesterone  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
retinyl acetate  (ISO)
sarin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (EXP)
trovafloxacin  (EXP)
tungsten  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ morphogenesis  (ISO,ISS)
apoptotic process  (IEA)
atrial septum morphogenesis  (IEA,ISO)
BMP signaling pathway  (IEA,ISO)
bone remodeling  (IEA,ISO)
cell differentiation  (IEA)
cell fate determination  (IDA)
cell population proliferation  (ISO)
cellular response to tumor cell  (IEA,ISO,ISS)
cholangiocyte proliferation  (IEA,ISO)
ciliary body morphogenesis  (IEA,ISO)
defense response to bacterium  (IEA,ISO)
determination of left/right symmetry  (ISO)
developmental growth  (IEA)
embryonic limb morphogenesis  (IEA,ISO)
glial cell differentiation  (IBA)
glomerular capillary formation  (IEA,ISO)
heart looping  (IEA,ISO)
hepatocyte proliferation  (IEA,ISO)
humoral immune response  (IEA,ISO)
in utero embryonic development  (IEA,ISO)
inflammatory response to antigenic stimulus  (IEA,ISO)
intracellular signal transduction  (IEA,ISO,ISS)
intrahepatic bile duct development  (IEA,ISO)
left/right axis specification  (IEA,ISO)
liver development  (ISO)
liver morphogenesis  (ISO)
marginal zone B cell differentiation  (IEA,ISO,ISS)
morphogenesis of an epithelial sheet  (IEA,ISO)
multicellular organism growth  (IEA,ISO)
myeloid dendritic cell differentiation  (IEA,ISO)
negative regulation of gene expression  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
Notch signaling pathway  (IEA,ISO,ISS)
placenta blood vessel development  (IEA,ISO)
placenta development  (ISO)
podocyte development  (IEA,ISO)
positive regulation of apoptotic process  (IEA,ISO)
positive regulation of BMP signaling pathway  (IEA,ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of ERK1 and ERK2 cascade  (IEA,ISO)
positive regulation of keratinocyte proliferation  (IEA,ISO,ISS)
positive regulation of miRNA transcription  (IEA,ISO)
positive regulation of neuroblast proliferation  (IBA)
positive regulation of osteoclast differentiation  (IEA,ISO)
positive regulation of Ras protein signal transduction  (IEA,ISO,ISS)
positive regulation of smooth muscle cell differentiation  (IEA,ISO)
positive regulation of transcription by RNA polymerase II  (IBA,IEA,ISO)
proximal tubule development  (IEA,ISO)
pulmonary valve morphogenesis  (IEA,ISO)
regulation of developmental process  (IEA)
regulation of DNA-templated transcription  (IEA)
regulation of osteoclast development  (IEA,ISO,ISS)
regulation of transcription by RNA polymerase II  (ISO)
tissue regeneration  (IEP)
wound healing  (IEA,IEP,ISO)

Cellular Component
cell surface  (IEA,ISO,ISS,TAS)
cilium  (IEA,ISO)
cytosol  (TAS)
extracellular region  (TAS)
glutamatergic synapse  (EXP,IDA,IEP)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO,ISS)
plasma membrane  (IBA,IEA,ISO,ISS,TAS)
postsynaptic density membrane  (EXP,IDA,IEP)
receptor complex  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Notch signaling pathway  (IEA,ISO,TAS)

References

References - curated
# Reference Title Reference Citation
1. Cell and molecular biology of Notch. Fiuza UM and Arias AM, J Endocrinol. 2007 Sep;194(3):459-74.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Jagged1-induced Notch signaling drives proliferation of multiple myeloma cells. Jundt F, etal., Blood. 2004 May 1;103(9):3511-5. Epub 2004 Jan 15.
5. Members of the Jagged/Notch gene families are expressed in injured arteries and regulate cell phenotype via alterations in cell matrix and cell-cell interaction. Lindner V, etal., Am J Pathol. 2001 Sep;159(3):875-83. doi: 10.1016/S0002-9440(10)61763-4.
6. Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts. Loh KH, etal., Cell. 2016 Aug 25;166(5):1295-1307.e21. doi: 10.1016/j.cell.2016.07.041.
7. NOTCH2 mutations cause Alagille syndrome, a heterogeneous disorder of the notch signaling pathway. McDaniell R, etal., Am J Hum Genet. 2006 Jul;79(1):169-73. Epub 2006 May 10.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. Amyloid precursor protein interacts with notch receptors. Oh SY, etal., J Neurosci Res. 2005 Oct 1;82(1):32-42.
11. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. GOA pipeline RGD automated data pipeline
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
18. Coordinate Notch3-hairy-related transcription factor pathway regulation in response to arterial injury. Mediator role of platelet-derived growth factor and ERK. Wang W, etal., J Biol Chem 2002 Jun 28;277(26):23165-71.
19. Notch2: a second mammalian Notch gene. Weinmaster G, etal., Development 1992 Dec;116(4):931-41.
Additional References at PubMed
PMID:1303260   PMID:9244302   PMID:11306509   PMID:11438922   PMID:11577080   PMID:11861489   PMID:12477932   PMID:12496659   PMID:12531696   PMID:12730124   PMID:15821257   PMID:16169548  
PMID:16641100   PMID:17219215   PMID:17359302   PMID:17573339   PMID:17658279   PMID:18311147   PMID:18469519   PMID:18710934   PMID:18801907   PMID:18838555   PMID:19217325   PMID:19828677  
PMID:19946888   PMID:20643108   PMID:21332343   PMID:21378985   PMID:21378989   PMID:21703454   PMID:23232913   PMID:23382219   PMID:23589286   PMID:23676271   PMID:23913046   PMID:25446530  
PMID:25985737   PMID:27942853   PMID:28495268   PMID:29063319   PMID:29149593   PMID:29329397   PMID:31217737   PMID:32866557   PMID:34581980   PMID:36348269   PMID:38148075  


Genomics

Comparative Map Data
Notch2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82188,299,336 - 188,432,823 (+)NCBIGRCr8
mRatBN7.22185,610,594 - 185,744,088 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2185,610,589 - 185,744,088 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2193,258,974 - 193,392,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02191,067,260 - 191,200,638 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02185,891,558 - 186,025,066 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02200,187,184 - 200,320,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2200,187,179 - 200,320,215 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,597,473 - 207,599,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02219,662,511 - 219,793,306 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42192,839,350 - 192,986,589 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2178,101,416 - 178,234,556 (+)NCBICelera
Cytogenetic Map2q34NCBI
NOTCH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,911,553 - 120,069,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,911,553 - 120,100,779 (-)EnsemblGRCh38hg38GRCh38
GRCh371120,454,176 - 120,612,276 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,255,699 - 120,413,799 (-)NCBINCBI36Build 36hg18NCBI36
Build 341120,166,219 - 120,324,318NCBI
Celera1118,684,898 - 118,760,431 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1118,312,713 - 118,398,477 (-)NCBIHuRef
CHM1_11120,569,670 - 120,727,793 (-)NCBICHM1_1
T2T-CHM13v2.01119,924,810 - 120,082,923 (-)NCBIT2T-CHM13v2.0
Notch2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39397,920,854 - 98,057,683 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl397,920,843 - 98,057,677 (+)EnsemblGRCm39 Ensembl
GRCm38398,013,538 - 98,150,367 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl398,013,527 - 98,150,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37397,817,461 - 97,954,290 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36398,098,943 - 98,232,854 (+)NCBIMGSCv36mm8
Celera399,412,506 - 99,549,473 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map342.42NCBI
Notch2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555681,660,731 - 1,809,173 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555681,660,357 - 1,812,285 (+)NCBIChiLan1.0ChiLan1.0
NOTCH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21112,490,679 - 112,716,322 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11112,158,059 - 112,315,530 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0182,457,829 - 82,615,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11117,537,162 - 117,612,840 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1117,538,243 - 117,612,840 (+)Ensemblpanpan1.1panPan2
NOTCH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11756,854,825 - 57,020,157 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1756,860,429 - 57,020,857 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1756,476,088 - 56,659,161 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01757,717,260 - 57,900,443 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1757,739,989 - 57,996,124 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11756,764,520 - 56,924,479 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01756,800,478 - 56,960,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01757,426,245 - 57,608,931 (-)NCBIUU_Cfam_GSD_1.0
LOC101965998
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050582,620,590 - 2,684,163 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936872390,852 - 536,321 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936872454,273 - 539,544 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOTCH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4100,981,636 - 101,150,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14100,951,522 - 101,152,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24110,927,023 - 110,985,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOTCH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12013,712,140 - 13,871,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2013,712,292 - 13,871,784 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603816,342,675 - 16,501,918 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Notch2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477215,571,998 - 15,726,426 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477215,572,350 - 15,726,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Notch2
437 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:57
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000025718
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2184114274202447032Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
7488929Bp366Blood pressure QTL 3660.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2184974550193094998Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat

Markers in Region
RH138723  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,609,809 - 185,609,964 (+)MAPPERmRatBN7.2
Rnor_6.02200,186,400 - 200,186,554NCBIRnor6.0
Rnor_5.02219,661,727 - 219,661,881UniSTSRnor5.0
RGSC_v3.42192,854,503 - 192,854,657UniSTSRGSC3.4
Celera2178,100,632 - 178,100,786UniSTS
RH 3.4 Map21255.2UniSTS
Cytogenetic Map2q34UniSTS
Notch2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,739,686 - 185,739,973 (+)MAPPERmRatBN7.2
Rnor_6.02200,316,002 - 200,316,288NCBIRnor6.0
Rnor_5.02219,791,687 - 219,791,973UniSTSRnor5.0
RGSC_v3.42192,984,970 - 192,985,256UniSTSRGSC3.4
Celera2178,230,155 - 178,230,441UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 46 30 19 30 2 2 58 28 35 11 2
Low 3 23 11 11 11 6 9 16 7 6 6
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000025718   ⟹   ENSRNOP00000025718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2185,610,594 - 185,744,088 (+)Ensembl
Rnor_6.0 Ensembl2200,187,184 - 200,320,215 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093564   ⟹   ENSRNOP00000076101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2185,610,589 - 185,612,201 (+)Ensembl
Rnor_6.0 Ensembl2200,187,179 - 200,188,792 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095490   ⟹   ENSRNOP00000095918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2185,644,226 - 185,744,088 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105572   ⟹   ENSRNOP00000097589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2185,644,226 - 185,744,088 (+)Ensembl
RefSeq Acc Id: NM_024358   ⟹   NP_077334
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,299,336 - 188,432,823 (+)NCBI
mRatBN7.22185,610,594 - 185,744,088 (+)NCBI
Rnor_6.02200,187,184 - 200,320,403 (+)NCBI
Rnor_5.02207,597,473 - 207,599,560 (-)NCBI
Rnor_5.02219,662,511 - 219,793,306 (+)NCBI
RGSC_v3.42192,839,350 - 192,986,589 (+)RGD
Celera2178,101,416 - 178,234,556 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_077334 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL85571 (Get FASTA)   NCBI Sequence Viewer  
  EDL85572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025718
  ENSRNOP00000025718.2
  ENSRNOP00000076101.1
  ENSRNOP00000095918.1
  ENSRNOP00000097589.1
GenBank Protein Q9QW30 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_077334   ⟸   NM_024358
- Peptide Label: precursor
- UniProtKB: Q9QW30 (UniProtKB/Swiss-Prot),   G3V8G9 (UniProtKB/TrEMBL),   A6K3C8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000076101   ⟸   ENSRNOT00000093564
RefSeq Acc Id: ENSRNOP00000025718   ⟸   ENSRNOT00000025718
RefSeq Acc Id: ENSRNOP00000097589   ⟸   ENSRNOT00000105572
RefSeq Acc Id: ENSRNOP00000095918   ⟸   ENSRNOT00000095490
Protein Domains
EGF-like   LNR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QW30-F1-model_v2 AlphaFold Q9QW30 1-2471 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691600
Promoter ID:EPDNEW_R2125
Type:initiation region
Name:Notch2_1
Description:notch 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02200,187,188 - 200,187,248EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3188 AgrOrtholog
BioCyc Gene G2FUF-51921 BioCyc
Ensembl Genes ENSRNOG00000018835 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025718 ENTREZGENE
  ENSRNOT00000025718.5 UniProtKB/TrEMBL
  ENSRNOT00000093564.2 UniProtKB/TrEMBL
  ENSRNOT00000095490.1 UniProtKB/TrEMBL
  ENSRNOT00000105572.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.300.320 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.3310 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3454_notch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch_NOD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch_NODP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29492 UniProtKB/TrEMBL
NCBI Gene 29492 ENTREZGENE
PANTHER CRUMBS FAMILY MEMBER UniProtKB/TrEMBL
  PROTEIN CRUMBS HOMOLOG 1 UniProtKB/TrEMBL
  PROTEIN SLIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLIT HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hEGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NODP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Notch2 PhenoGen
PIRSF Notch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS EGFBLOOD UniProtKB/TrEMBL
  LNOTCHREPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOTCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOTCH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASX_HYDROXYL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LNR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018835 RatGTEx
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3454 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NODP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57184 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC203288
UniProt A0A1W2Q619_RAT UniProtKB/TrEMBL
  A0A8I6B3I0_RAT UniProtKB/TrEMBL
  A0A8I6GM47_RAT UniProtKB/TrEMBL
  A6K3C8 ENTREZGENE, UniProtKB/TrEMBL
  A6K3C9_RAT UniProtKB/TrEMBL
  G3V8G9 ENTREZGENE, UniProtKB/TrEMBL
  NOTC2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-04 Notch2  notch receptor 2  Notch2  notch 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Notch2  notch 2  Notch2  Notch homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-08-29 Notch2  Notch homolog 2 (Drosophila)  Notch2  notch gene homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Notch2  notch gene homolog 2, (Drosophila)      Name updated 70584 APPROVED
2001-10-23 Notch2  Notch gene homolog 2, (Drosophila)      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression highly expressed in spleen, kidney and liver 69906
gene_process Drosophila homolog controls ectodermal and neural cell fate 69906