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Gene: Stxbp4 (syntaxin binding protein 4) Rattus norvegicus

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Symbol:

Stxbp4

Name:

syntaxin binding protein 4

RGD ID:

1307903

Description:

Predicted to enable syntaxin binding activity. Predicted to be involved in several processes, including insulin receptor signaling pathway; positive regulation of keratinocyte proliferation; and protein stabilization. Predicted to act upstream of or within cellular response to type II interferon; protein targeting; and regulation of D-glucose transmembrane transport. Predicted to be located in phagocytic vesicle. Predicted to be active in cytoplasmic vesicle. Orthologous to human STXBP4 (syntaxin binding protein 4); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC303443; syntaxin-binding protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STXBP4 (syntaxin binding protein 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Stxbp4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stxbp4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STXBP4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STXBP4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stxbp4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STXBP4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STXBP4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stxbp4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stxbp4 (syntaxin binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	STXBP4 (syntaxin binding protein 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STXBP4 (syntaxin binding protein 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Stxbp4 (syntaxin binding protein 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stxbp4 (syntaxin binding protein 4)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stxbp4 (syntaxin binding protein 4)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	a	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	stxbp4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stxbp4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	75,798,938 - 75,955,817 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	75,798,938 - 75,955,737 (-)	Ensembl				GRCr8
mRatBN7.2	10	75,301,868 - 75,458,741 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	75,305,463 - 75,458,663 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	79,922,111 - 80,077,764 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	79,427,083 - 79,582,743 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	74,907,719 - 75,061,104 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	78,005,745 - 78,168,641 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	78,009,338 - 78,168,609 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	77,867,560 - 78,023,758 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	78,887,817 - 79,039,618 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	74,190,700 - 74,353,350 (-)	NCBI		Celera
RGSC_v3.1	10	78,929,358 - 79,041,280 (-)	NCBI
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

clorgyline (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

indometacin (ISO)

methoxyacetic acid (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (EXP)

Monobutylphthalate (ISO)

N-ethyl-N-nitrosourea (ISO)

paracetamol (EXP)

succimer (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cellular response to type II interferon (ISO)

DNA damage response (ISO)

insulin receptor signaling pathway (IBA,ISO)

positive regulation of cell cycle G1/S phase transition (ISO)

positive regulation of keratinocyte proliferation (ISO)

protein stabilization (ISO)

protein targeting (ISO)

regulation of D-glucose transmembrane transport (ISO)

regulation of insulin secretion involved in cellular response to glucose stimulus (ISO)

Cellular Component

cytoplasmic vesicle (IBA)

phagocytic vesicle (ISO)

Molecular Function

protein binding (ISO)

syntaxin binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

insulin responsive facilitative sugar transporter mediated glucose transport pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	GLUT4 translocation: the last 200 nanometers.	Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.

Additional References at PubMed

PMID:10394363	PMID:12855681	PMID:19056867	PMID:19144319	PMID:19451233

Genomics

Comparative Map Data

Stxbp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	75,798,938 - 75,955,817 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	75,798,938 - 75,955,737 (-)	Ensembl				GRCr8
mRatBN7.2	10	75,301,868 - 75,458,741 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	75,305,463 - 75,458,663 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	79,922,111 - 80,077,764 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	79,427,083 - 79,582,743 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	74,907,719 - 75,061,104 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	78,005,745 - 78,168,641 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	78,009,338 - 78,168,609 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	77,867,560 - 78,023,758 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	78,887,817 - 79,039,618 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	74,190,700 - 74,353,350 (-)	NCBI		Celera
RGSC_v3.1	10	78,929,358 - 79,041,280 (-)	NCBI
Cytogenetic Map	10	q26	NCBI

STXBP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	54,968,765 - 55,213,273 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	54,968,727 - 55,173,632 (+)	Ensembl			hg38	GRCh38
GRCh37	17	53,046,126 - 53,250,993 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	50,401,125 - 50,596,448 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	50,401,124 - 50,596,151	NCBI
Celera	17	49,508,379 - 49,703,707 (+)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	48,405,512 - 48,600,855 (+)	NCBI		HuRef
CHM1_1	17	53,111,024 - 53,306,373 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	55,843,691 - 56,088,281 (+)	NCBI		T2T-CHM13v2.0

Stxbp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	90,367,318 - 90,528,962 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	90,367,318 - 90,528,910 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	90,476,492 - 90,638,136 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	90,476,492 - 90,638,084 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	90,337,806 - 90,499,422 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	90,296,007 - 90,454,170 (-)	NCBI		MGSCv36	mm8
Celera	11	100,084,168 - 100,247,827 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	55.04	NCBI

Stxbp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	7,466,314 - 7,619,277 (-)	Ensembl
ChiLan1.0	NW_004955451	7,463,285 - 7,635,690 (-)	NCBI	ChiLan1.0	ChiLan1.0

STXBP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	71,153,892 - 71,350,046 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	75,963,965 - 76,159,707 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	49,058,071 - 49,253,448 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	53,923,387 - 54,118,415 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	53,923,387 - 54,118,415 (+)	Ensembl			panPan2	panpan1.1

STXBP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	30,079,797 - 30,293,750 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	30,092,289 - 30,236,135 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	29,421,439 - 29,635,785 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	30,879,296 - 31,092,978 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	30,879,341 - 31,037,683 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	29,647,143 - 29,861,823 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	29,904,584 - 30,118,631 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	30,038,038 - 30,251,693 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stxbp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	29,521,694 - 29,669,009 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	7,406,124 - 7,554,118 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	7,406,130 - 7,553,389 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STXBP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	31,277,487 - 31,472,792 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	31,277,116 - 31,478,828 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	31,875,052 - 31,996,494 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STXBP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	38,210,099 - 38,406,063 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	38,292,372 - 38,388,711 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	9,047,055 - 9,245,394 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stxbp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	10,271,351 - 10,420,153 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624795	10,255,874 - 10,497,486 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stxbp4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	80,214,076 - 80,341,424 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stxbp4
1116 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	45
Interacting mature miRNAs:	47
Transcripts:	ENSRNOT00000041119
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	56868440	76129113	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
2289982	Bp303	Blood pressure QTL 303			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	73950209	76129113	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	73695339	97272278	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
724555	Bp150	Blood pressure QTL 150		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	73950209	78707585	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	73049656	94495280	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	73695339	83061459	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	73695339	83061459	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	64139597	83061459	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61843633	83061236	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
12880053	Cm104	Cardiac mass QTL 104		0.009	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	73950209	83959619	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Got103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	75,390,474 - 75,390,722 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	78,094,505 - 78,094,752	NCBI	Rnor6.0
Rnor_5.0	10	77,955,787 - 77,956,034	UniSTS	Rnor5.0
RGSC_v3.4	10	78,975,020 - 78,975,268	RGD	RGSC3.4
RGSC_v3.4	10	78,975,021 - 78,975,268	UniSTS	RGSC3.4
Celera	10	74,275,124 - 74,275,361	UniSTS
RGSC_v3.1	10	78,989,391 - 78,989,638	RGD
RH 3.4 Map	10	683.7	UniSTS
RH 3.4 Map	10	683.7	RGD
RH 2.0 Map	10	794.8	RGD
Cytogenetic Map	10	q26	UniSTS

BE096571

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	75,361,370 - 75,361,540 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	78,065,400 - 78,065,569	NCBI	Rnor6.0
Rnor_5.0	10	77,926,682 - 77,926,851	UniSTS	Rnor5.0
RGSC_v3.4	10	78,945,356 - 78,945,525	UniSTS	RGSC3.4
Celera	10	74,246,020 - 74,246,189	UniSTS
RH 3.4 Map	10	680.9	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH138307

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	75,414,394 - 75,414,516 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	78,125,576 - 78,125,697	NCBI	Rnor6.0
Rnor_5.0	10	77,981,039 - 77,981,160	UniSTS	Rnor5.0
RGSC_v3.4	10	78,999,653 - 78,999,774	UniSTS	RGSC3.4
Celera	10	74,298,747 - 74,298,868	UniSTS
RH 3.4 Map	10	680.9	UniSTS
Cytogenetic Map	10	q26	UniSTS

AI231151

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	75,305,818 - 75,306,016 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	78,009,696 - 78,009,893	NCBI	Rnor6.0
Rnor_5.0	10	77,871,511 - 77,871,708	UniSTS	Rnor5.0
RGSC_v3.4	10	78,888,180 - 78,888,377	UniSTS	RGSC3.4
Celera	10	74,191,063 - 74,191,260	UniSTS
RH 3.4 Map	10	678.2	UniSTS
Cytogenetic Map	10	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	90	59	6	354	190	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001415095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041119 ⟹ ENSRNOP00000039777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,838,469 - 75,955,737 (-)	Ensembl
mRatBN7.2 Ensembl	10	75,305,463 - 75,458,663 (-)	Ensembl
Rnor_6.0 Ensembl	10	78,009,338 - 78,168,609 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083009 ⟹ ENSRNOP00000070285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,802,164 - 75,955,737 (-)	Ensembl
mRatBN7.2 Ensembl	10	75,305,463 - 75,458,663 (-)	Ensembl
Rnor_6.0 Ensembl	10	78,009,666 - 78,156,477 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092852 ⟹ ENSRNOP00000075974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,911,711 - 75,955,737 (-)	Ensembl
mRatBN7.2 Ensembl	10	75,414,629 - 75,458,663 (-)	Ensembl
Rnor_6.0 Ensembl	10	78,063,248 - 78,155,999 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100254 ⟹ ENSRNOP00000100226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,798,938 - 75,955,737 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117460 ⟹ ENSRNOP00000077173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,917,836 - 75,955,737 (-)	Ensembl
mRatBN7.2 Ensembl	10	75,420,754 - 75,458,663 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128106 ⟹ ENSRNOP00000104784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,798,938 - 75,955,737 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134372 ⟹ ENSRNOP00000108577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,841,763 - 75,955,737 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137524 ⟹ ENSRNOP00000107409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	75,819,104 - 75,955,737 (-)	Ensembl

RefSeq Acc Id:

NM_001415095 ⟹ NP_001402024

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,798,938 - 75,955,737 (-)	NCBI
mRatBN7.2	10	75,301,868 - 75,458,661 (-)	NCBI

RefSeq Acc Id:

XM_006247131 ⟹ XP_006247193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,842,093 - 75,955,817 (-)	NCBI
mRatBN7.2	10	75,338,567 - 75,458,741 (-)	NCBI
Rnor_6.0	10	78,048,953 - 78,168,641 (-)	NCBI
Rnor_5.0	10	77,867,560 - 78,023,758 (-)	NCBI

Sequence:

show sequence

CTCCGGCTTGAGCTCCGCTGCTGCCTTGACTACCAGATTCCACAGGTAGCAGTCGCGCTACGGA
GGCCGGGTGGCCCGAAGAGGGAAACCCGTGAGGTGGAGTAGCATGAGCTGGAGCCATACAGAAT
CTGCAGGAAGACCCTCGGGGGAGTCGGGGGGACACGGCTTTCTGCTTTCTTCACGTGGACTGTG
TAACTATTTTTCTGCTTCTGAGGAAAAGAATATTTAGACTCTCCAAGGTCTTCCTTCACATAGC
TGTTAAATCCAAGGCAACTGTGGAAGCATGGATATTGGTACATCTTCTGCACGGTCCTCCAGCC
CACTTGAAAGGGATCCTGCCTTTCGGGTGATTACAGTGGCTAAGGAAACAGGTCTAGGTCTGAA
GATCCTAGGCGGCATTGATAGGAATGAAGGACCATTGGTGTATATTCACGAAGTCACTCCTGGA
GGCGACTGTTACAAGGATGGACGTTTGAAGCCAGGAGATCAGCTTGTCTCCATAAACAAGGAAT
CTATGATTGGTGTATCATTTGAAGAAGCAAAAAACATACTTACCAGAGCCAAGTTGAGGTGGGA
ATCTCCGTTGGAGATAGCATTTATCAGACAGAAGTCTTACTGTGGTCATCCAGGAAACATTTGC
TGTCAGTCCCCACCAGTGTCAGAAGACTGTGAACCTCAAACCTCAGCATTTAATCTTCTTTCCT
CTCCCGCTGGAACACTACTTCCAAAGACTTCATCCACTCCCAGGACTCAGGACTCCATTTTACC
CTCCTGTACAGTAATTCAGACTCAACCTGAGCACAGTCAAGCAGGGCTTGCTCCAGTTCCTTCT
TTGAACAACCGCCCTACAGACACATCCAATGCAGACATTGCTCCAGCCTGGACTGATGACGCTT
CTGGACCACAAGGAAAGATTTCCCTAAATCCTTCTGCTCGCCTTAAGGCAGAGAAACTGGAAAT
GGCTCTCAATTACCTCGGTATACAGCCAACAAAGGAACAGCATGAAGCCCTGAGACAGCAAGTC
CAGGCCGACTCAGAGGGGACTGTGTCTTTTGGGGATTTCGTCCAGGTTGCCAGAAATTTGTTCT
GCTTGCAGTTGGATGAAGTAAATGTTGGTGACCATGAACTCCCCAGCGTCTTGGACTCACAGCT
TCTCCCCTGTGGTTCTCTAGAAGCAGATGAAGTGGGAAGACTGAGACAAGAAAGAAATGCTGCT
CTGGAAGAACGGGATGCGCTTAAGGAGAAATTACTCGAATCAGAGAAGCACAGGAAACAGTTGA
TAGAAGAACTCCAGAATGTGAAACAGGAAGCCAAAGCCGTAGCCGAGGAAACACGAGCTCTGCG
AAGCCGGATTCATCTTGCCGAAGCTGCACAGAGGCAGGCACGTGGGATGGAAATGGATTATGAA
GAGGTGATCCGTCTGCTAGAGGCTGAGGTCTCAGAACTAAAGGCCCGGCTCGCTGATTATTCTG
ACCAAAATAAAGAAAGTGTCCAAGACTTGAGAAAGAGAGTCACAGTTCTTGACTGCCAATTGCG
AAAATCAGAAATGGCTCGGAAAACATTTAAGTCATCCACTGAAAGGCTCCTTCGTTTTGTAGAG
GCTATTCAAGAAGTACTTTTGGACAGTTGTGCTCCTTTATCAAATTTAAGTGAAAGAAGAGCTG
TGCTTGCCTCTCAGACCTCGCTTCCGCTGCTGGGAAGGAACGGACGTAACTTCCCAGCACCCCT
GCTTCTGGAATCCAAGGAACTTCTTAGGTCTGTCCGTGCCGTACTTGATATGGACTCTGGATTC
ATGGAGATTTCAAAACTGTTAACAATCAAGGATGTCAGCGAAAGAAGACATTTTCAGGAAGGAG
GAACACAGCCCTAGTGGGTGAAACACTGAGGAATGGGTAGACGTAGTAAGGGCTGGGAGCACGG
TCAGGCTGCAGAGCTCTGGATGAGAGAAAAGGAGTGTGTCTGTGATCGCTGAAGCCCTGACACC
CAGAGAATGGATGTGACAGAAGGAGAGGTCCTCTGACACAGCTCAGAAGAGACAGCAAAGGGGC
CAGATGGGAGCATTCAAGCTGGCAGAATTAAATGAAGAGCTGATTGCTGGGGAGGGGATTCTAA
GGAGGAGAGAATTCCTGAGGACTGATTACCAGCACTAAATGCTGTGATCCAGAAGATGCATGAG
AAAGGGTGGGCTGTGAGTGTAAGCATTTTGACCTACCTCTAAGAGCCGACTTCCTGGAGATCAG
GAAGACAGAGAGACATTCAGCAATGCTGTTTCGAATGTCAGTTGAATCTCCTGTGAGTCATAAG
GCATTTCAGTGTCTGCTGGGAACTTATTTATAAATATCAGCTGTGTAACTGCGATGCAAAACTT
AACAAGATTATGGAAAACGTTATAGAATGCTGCATATTGAAAAGCTGGGTTCCAGATGCTGCTA
TACATACAGCTCAGAAACGGGCAAACGCATTGTTACACTACATATGTACATGTCAAAATATATC
ACATACAAATATGCAAAATAAAAAATAAAGAAGTATTATAAGATTCAAAAAAAAAAAAAGAGTG
GATCTTCCCATTTCAAATCATTAATACCTCCCAGGTGTGCCCAGTTGCTTGGGTTTTAGTTAAT
TCCAGAGT

hide sequence

RefSeq Acc Id:

XM_039086053 ⟹ XP_038941981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,803,030 - 75,955,817 (-)	NCBI
mRatBN7.2	10	75,301,868 - 75,458,741 (-)	NCBI

RefSeq Acc Id:

XM_039086054 ⟹ XP_038941982

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,866,526 - 75,955,817 (-)	NCBI
mRatBN7.2	10	75,369,451 - 75,458,741 (-)	NCBI

RefSeq Acc Id:

XM_063269102 ⟹ XP_063125172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,798,938 - 75,955,817 (-)	NCBI

RefSeq Acc Id:

XM_063269103 ⟹ XP_063125173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,798,938 - 75,955,817 (-)	NCBI

RefSeq Acc Id:

XM_063269104 ⟹ XP_063125174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,842,093 - 75,955,817 (-)	NCBI

RefSeq Acc Id:

XM_063269105 ⟹ XP_063125175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,798,938 - 75,955,817 (-)	NCBI

RefSeq Acc Id:

XR_005489842

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,803,047 - 75,955,817 (-)	NCBI
mRatBN7.2	10	75,305,977 - 75,458,741 (-)	NCBI

RefSeq Acc Id:

XR_005489843

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,803,047 - 75,952,113 (-)	NCBI
mRatBN7.2	10	75,305,977 - 75,455,037 (-)	NCBI

RefSeq Acc Id:

XR_005489844

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,803,047 - 75,955,817 (-)	NCBI
mRatBN7.2	10	75,305,977 - 75,458,741 (-)	NCBI

RefSeq Acc Id:

XR_005489845

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,803,047 - 75,952,113 (-)	NCBI
mRatBN7.2	10	75,305,977 - 75,455,037 (-)	NCBI

RefSeq Acc Id:

XR_005489846

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,803,047 - 75,955,812 (-)	NCBI
mRatBN7.2	10	75,305,977 - 75,458,741 (-)	NCBI

RefSeq Acc Id:

XR_005489848

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,803,047 - 75,955,813 (-)	NCBI
mRatBN7.2	10	75,305,977 - 75,458,741 (-)	NCBI

RefSeq Acc Id:

XR_005489849

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,866,592 - 75,955,817 (-)	NCBI
mRatBN7.2	10	75,369,504 - 75,458,741 (-)	NCBI

RefSeq Acc Id:

XR_005489850

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	75,860,177 - 75,955,817 (-)	NCBI
mRatBN7.2	10	75,363,091 - 75,458,741 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001402024	(Get FASTA)	NCBI Sequence Viewer
	XP_006247193	(Get FASTA)	NCBI Sequence Viewer
	XP_038941981	(Get FASTA)	NCBI Sequence Viewer
	XP_038941982	(Get FASTA)	NCBI Sequence Viewer
	XP_063125172	(Get FASTA)	NCBI Sequence Viewer
	XP_063125173	(Get FASTA)	NCBI Sequence Viewer
	XP_063125174	(Get FASTA)	NCBI Sequence Viewer
	XP_063125175	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM05670	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000039777.5
	ENSRNOP00000070285
	ENSRNOP00000070285.2
	ENSRNOP00000075974.2
	ENSRNOP00000077173.1
	ENSRNOP00000100226
	ENSRNOP00000100226.1
	ENSRNOP00000104784
	ENSRNOP00000104784.1
	ENSRNOP00000107409.1
	ENSRNOP00000108577
	ENSRNOP00000108577.1

RefSeq Acc Id:

XP_006247193 ⟸ XM_006247131

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDIGTSSARSSSPLERDPAFRVITVAKETGLGLKILGGIDRNEGPLVYIHEVTPGGDCYKDGRL
KPGDQLVSINKESMIGVSFEEAKNILTRAKLRWESPLEIAFIRQKSYCGHPGNICCQSPPVSED
CEPQTSAFNLLSSPAGTLLPKTSSTPRTQDSILPSCTVIQTQPEHSQAGLAPVPSLNNRPTDTS
NADIAPAWTDDASGPQGKISLNPSARLKAEKLEMALNYLGIQPTKEQHEALRQQVQADSEGTVS
FGDFVQVARNLFCLQLDEVNVGDHELPSVLDSQLLPCGSLEADEVGRLRQERNAALEERDALKE
KLLESEKHRKQLIEELQNVKQEAKAVAEETRALRSRIHLAEAAQRQARGMEMDYEEVIRLLEAE
VSELKARLADYSDQNKESVQDLRKRVTVLDCQLRKSEMARKTFKSSTERLLRFVEAIQEVLLDS
CAPLSNLSERRAVLASQTSLPLLGRNGRNFPAPLLLESKELLRSVRAVLDMDSGFMEISKLLTI
KDVSERRHFQEGGTQP

hide sequence

Ensembl Acc Id:

ENSRNOP00000039777 ⟸ ENSRNOT00000041119

Ensembl Acc Id:

ENSRNOP00000075974 ⟸ ENSRNOT00000092852

Ensembl Acc Id:

ENSRNOP00000070285 ⟸ ENSRNOT00000083009

RefSeq Acc Id:	XP_038941981 ⟸ XM_039086053
- Peptide Label:	isoform X4
- UniProtKB:	A6HI15 (UniProtKB/TrEMBL), D3Z9G8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941982 ⟸ XM_039086054
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000077173 ⟸ ENSRNOT00000117460

RefSeq Acc Id:	NP_001402024 ⟸ NM_001415095
- UniProtKB:	A0A0G2JXI5 (UniProtKB/TrEMBL), A6HI15 (UniProtKB/TrEMBL), D3Z9G8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125173 ⟸ XM_063269103
- Peptide Label:	isoform X2
- UniProtKB:	A6HI15 (UniProtKB/TrEMBL), D3Z9G8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125172 ⟸ XM_063269102
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXI5 (UniProtKB/TrEMBL), A6HI15 (UniProtKB/TrEMBL), D3Z9G8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125175 ⟸ XM_063269105
- Peptide Label:	isoform X5
- UniProtKB:	A6HI15 (UniProtKB/TrEMBL), D3Z9G8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125174 ⟸ XM_063269104
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000108577 ⟸ ENSRNOT00000134372

Ensembl Acc Id:

ENSRNOP00000107409 ⟸ ENSRNOT00000137524

Ensembl Acc Id:

ENSRNOP00000104784 ⟸ ENSRNOT00000128106

Ensembl Acc Id:

ENSRNOP00000100226 ⟸ ENSRNOT00000100254

Protein Domains

PDZ WW

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXI5-F1-model_v2	AlphaFold	A0A0G2JXI5	1-557	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697587

Promoter ID:

EPDNEW_R8112

Type:

multiple initiation site

Name:

Stxbp4_1

Description:

syntaxin binding protein 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	78,168,607 - 78,168,667	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307903	AgrOrtholog
BioCyc Gene	G2FUF-23677	BioCyc
Ensembl Genes	ENSRNOG00000032768	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041119.7	UniProtKB/TrEMBL
	ENSRNOT00000083009	ENTREZGENE
	ENSRNOT00000083009.3	UniProtKB/TrEMBL
	ENSRNOT00000092852.3	UniProtKB/TrEMBL
	ENSRNOT00000100254	ENTREZGENE
	ENSRNOT00000100254.2	UniProtKB/TrEMBL
	ENSRNOT00000117460.2	UniProtKB/TrEMBL
	ENSRNOT00000128106	ENTREZGENE
	ENSRNOT00000128106.1	UniProtKB/TrEMBL
	ENSRNOT00000134372	ENTREZGENE
	ENSRNOT00000134372.1	UniProtKB/TrEMBL
	ENSRNOT00000137524.1	UniProtKB/TrEMBL
Gene3D-CATH	2.20.70.10	UniProtKB/TrEMBL
	2.30.42.10	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PDZ_scaffold	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	WW_dom_sf	UniProtKB/TrEMBL
	WW_Rsp5_WWP	UniProtKB/TrEMBL
NCBI Gene	303443	ENTREZGENE
PANTHER	MULTIPLE PDZ DOMAIN PROTEIN	UniProtKB/TrEMBL
	SYNTAXIN-BINDING PROTEIN 4	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
	PF00397	UniProtKB/TrEMBL
PhenoGen	Stxbp4	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
	WW_DOMAIN_1	UniProtKB/TrEMBL
	WW_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000032768	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
	SM00456	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
	SSF50156	UniProtKB/TrEMBL
	WW_Rsp5_WWP	UniProtKB/TrEMBL
UniProt	A0A0G2JXI5	ENTREZGENE, UniProtKB/TrEMBL
	A0A1B0GWP6_RAT	UniProtKB/TrEMBL
	A0A8I5ZJE6_RAT	UniProtKB/TrEMBL
	A0ABK0KYS9_RAT	UniProtKB/TrEMBL
	A0ABK0LQX1_RAT	UniProtKB/TrEMBL
	A0ABK0LRI1_RAT	UniProtKB/TrEMBL
	A0ABK0LS06_RAT	UniProtKB/TrEMBL
	A6HI15	ENTREZGENE, UniProtKB/TrEMBL
	D3Z9G8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Stxbp4	syntaxin binding protein 4	Stxbp4_predicted	syntaxin binding protein 4 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Stxbp4_predicted	syntaxin binding protein 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)