Kctd7 (potassium channel tetramerization domain containing 7) - Rat Genome Database

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Gene: Kctd7 (potassium channel tetramerization domain containing 7) Rattus norvegicus
Analyze
Symbol: Kctd7
Name: potassium channel tetramerization domain containing 7
RGD ID: 1582914
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including intracellular glutamate homeostasis; intracellular potassium ion homeostasis; and membrane hyperpolarization. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 3. Orthologous to human KCTD7 (potassium channel tetramerization domain containing 7); INTERACTS WITH 17alpha-ethynylestradiol; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BTB/POZ domain-containing protein KCTD7; LOC687365; LOC688993; MGC188043; potassium channel tetramerisation domain containing 7; similar to potassium channel tetramerisation domain containing 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,157,141 - 32,168,463 (-)NCBIGRCr8
mRatBN7.21226,520,969 - 26,532,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,523,142 - 26,532,138 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,671,087 - 27,680,095 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,281,596 - 28,290,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,343,186 - 27,352,200 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,024,080 - 30,033,357 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,024,081 - 30,033,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,961,818 - 31,970,830 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,564,093 - 27,573,372 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,237,507 - 28,246,407 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:16751776   PMID:22748208   PMID:27742667  


Genomics

Comparative Map Data
Kctd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,157,141 - 32,168,463 (-)NCBIGRCr8
mRatBN7.21226,520,969 - 26,532,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,523,142 - 26,532,138 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,671,087 - 27,680,095 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,281,596 - 28,290,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,343,186 - 27,352,200 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,024,080 - 30,033,357 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,024,081 - 30,033,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,961,818 - 31,970,830 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,564,093 - 27,573,372 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,237,507 - 28,246,407 (-)NCBICelera
Cytogenetic Map12q12NCBI
KCTD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,628,881 - 66,643,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,628,881 - 66,649,067 (+)EnsemblGRCh38hg38GRCh38
GRCh37766,093,868 - 66,108,216 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36765,731,380 - 65,743,252 (+)NCBINCBI36Build 36hg18NCBI36
Build 34765,538,094 - 65,549,967NCBI
Celera766,008,064 - 66,022,242 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef762,278,875 - 62,293,196 (+)NCBIHuRef
CHM1_1766,189,128 - 66,203,476 (+)NCBICHM1_1
T2T-CHM13v2.0767,848,529 - 67,862,889 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2765,431,411 - 65,445,769 (+)NCBI
Kctd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,166,814 - 130,183,960 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,173,702 - 130,184,647 (+)EnsemblGRCm39 Ensembl
GRCm385130,137,978 - 130,155,119 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,144,861 - 130,155,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,620,758 - 130,631,678 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,429,591 - 130,440,511 (+)NCBIMGSCv36mm8
Celera5127,151,737 - 127,162,650 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.72NCBI
Kctd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,627,763 - 8,636,206 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,627,763 - 8,637,882 (+)NCBIChiLan1.0ChiLan1.0
KCTD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2681,942,145 - 81,988,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17130,269,315 - 130,328,801 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0759,392,366 - 59,435,993 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1773,687,965 - 73,697,728 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl773,687,952 - 73,697,728 (+)Ensemblpanpan1.1panPan2
KCTD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha62,764,741 - 2,791,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06869,955 - 896,567 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6869,908 - 986,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16804,950 - 831,471 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06807,116 - 833,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06978,947 - 1,005,464 (+)NCBIUU_Cfam_GSD_1.0
KCTD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,385,006 - 16,393,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,382,333 - 16,393,861 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,636,406 - 16,646,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,255,817 - 2,276,616 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl282,256,743 - 2,271,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607014,356,688 - 14,370,912 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,598,309 - 8,609,696 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,588,339 - 8,609,541 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kctd7
87 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:67
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000001198
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134044726024Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134043551788Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat

Markers in Region
RH137475  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,523,154 - 26,523,357 (+)MAPPERmRatBN7.2
Rnor_6.01230,024,094 - 30,024,296NCBIRnor6.0
Rnor_5.01231,961,832 - 31,962,034UniSTSRnor5.0
RGSC_v3.41227,564,107 - 27,564,309UniSTSRGSC3.4
Celera1228,237,521 - 28,237,723UniSTS
Cytogenetic Map12q13UniSTS
RH135160  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,528,005 - 26,528,216 (+)MAPPERmRatBN7.2
Rnor_6.01230,029,226 - 30,029,436NCBIRnor6.0
Rnor_5.01231,966,699 - 31,966,909UniSTSRnor5.0
RGSC_v3.41227,569,241 - 27,569,451UniSTSRGSC3.4
Celera1228,242,276 - 28,242,486UniSTS
RH 3.4 Map12450.0UniSTS
Cytogenetic Map12q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000001198   ⟹   ENSRNOP00000001198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,523,142 - 26,532,138 (-)Ensembl
Rnor_6.0 Ensembl1230,024,081 - 30,033,357 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104418   ⟹   ENSRNOP00000083749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,523,142 - 26,529,695 (-)Ensembl
RefSeq Acc Id: NM_001128194   ⟹   NP_001121666
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,159,296 - 32,168,292 (-)NCBI
mRatBN7.21226,523,141 - 26,532,138 (-)NCBI
Rnor_6.01230,024,080 - 30,033,357 (-)NCBI
Rnor_5.01231,961,818 - 31,970,830 (-)NCBI
RGSC_v3.41227,564,093 - 27,573,372 (-)RGD
Celera1228,237,507 - 28,246,407 (-)RGD
Sequence:
RefSeq Acc Id: XR_005491672
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,157,141 - 32,168,463 (-)NCBI
mRatBN7.21226,520,969 - 26,532,327 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001121666 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI62055 (Get FASTA)   NCBI Sequence Viewer  
  B1WC97 (Get FASTA)   NCBI Sequence Viewer  
  EDM13466 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001198.3
  ENSRNOP00000083749.1
  ENSRNOP00055000330
  ENSRNOP00060014267
  ENSRNOP00065001507
RefSeq Acc Id: NP_001121666   ⟸   NM_001128194
- UniProtKB: B1WC97 (UniProtKB/Swiss-Prot),   A0A8I6G9F0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001198   ⟸   ENSRNOT00000001198
Ensembl Acc Id: ENSRNOP00000083749   ⟸   ENSRNOT00000104418
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC97-F1-model_v2 AlphaFold B1WC97 1-289 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698577
Promoter ID:EPDNEW_R9102
Type:initiation region
Name:Kctd7_1
Description:potassium channel tetramerization domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01230,033,414 - 30,033,474EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1582914 AgrOrtholog
BioCyc Gene G2FUF-19525 BioCyc
Ensembl Genes ENSRNOG00000042384 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055000279 UniProtKB/Swiss-Prot
  ENSRNOG00060010811 UniProtKB/Swiss-Prot
  ENSRNOG00065001608 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001198.5 UniProtKB/Swiss-Prot
  ENSRNOT00000104418.1 UniProtKB/TrEMBL
  ENSRNOT00055000467 UniProtKB/Swiss-Prot
  ENSRNOT00060018307 UniProtKB/Swiss-Prot
  ENSRNOT00065002158 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7114289 IMAGE-MGC_LOAD
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:688993 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188043 IMAGE-MGC_LOAD
NCBI Gene 688993 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kctd7 PhenoGen
RatGTEx ENSRNOG00000042384 RatGTEx
  ENSRNOG00055000279 RatGTEx
  ENSRNOG00060010811 RatGTEx
  ENSRNOG00065001608 RatGTEx
SMART BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6G9F0 ENTREZGENE, UniProtKB/TrEMBL
  B1WC97 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Kctd7  potassium channel tetramerization domain containing 7  Kctd7  potassium channel tetramerisation domain containing 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-09 Kctd7  potassium channel tetramerisation domain containing 7  LOC687365  similar to potassium channel tetramerisation domain containing 7  Data merged from RGD:1586532 737654 APPROVED
2008-03-06 Kctd7  potassium channel tetramerisation domain containing 7  LOC688993  similar to potassium channel tetramerisation domain containing 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC687365  similar to potassium channel tetramerisation domain containing 7      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688993  similar to potassium channel tetramerisation domain containing 7      Symbol and Name status set to provisional 70820 PROVISIONAL