Kctd7 (potassium channel tetramerization domain containing 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Kctd7 (potassium channel tetramerization domain containing 7) Heterocephalus glaber
Analyze
Symbol: Kctd7
Name: potassium channel tetramerization domain containing 7
RGD ID: 18902503
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN intracellular glutamate homeostasis (ortholog); intracellular potassium ion homeostasis (ortholog); ASSOCIATED WITH argininosuccinic aciduria (ortholog); epilepsy (ortholog); Generalized Epilepsy (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein KCTD7; potassium channel tetramerisation domain containing 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,598,309 - 8,609,696 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,588,339 - 8,609,541 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA)
membrane  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Kctd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,598,309 - 8,609,696 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,588,339 - 8,609,541 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KCTD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,628,881 - 66,643,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,628,881 - 66,649,067 (+)EnsemblGRCh38hg38GRCh38
GRCh37766,093,868 - 66,108,216 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36765,731,380 - 65,743,252 (+)NCBINCBI36Build 36hg18NCBI36
Build 34765,538,094 - 65,549,967NCBI
Celera766,008,064 - 66,022,242 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef762,278,875 - 62,293,196 (+)NCBIHuRef
CHM1_1766,189,128 - 66,203,476 (+)NCBICHM1_1
T2T-CHM13v2.0767,848,529 - 67,862,889 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2765,431,411 - 65,445,769 (+)NCBI
Kctd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,166,814 - 130,183,960 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,173,702 - 130,184,647 (+)EnsemblGRCm39 Ensembl
GRCm385130,137,978 - 130,155,119 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,144,861 - 130,155,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,620,758 - 130,631,678 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,429,591 - 130,440,511 (+)NCBIMGSCv36mm8
Celera5127,151,737 - 127,162,650 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.72NCBI
Kctd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,157,141 - 32,168,463 (-)NCBIGRCr8
mRatBN7.21226,520,969 - 26,532,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,523,142 - 26,532,138 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,671,087 - 27,680,095 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,281,596 - 28,290,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,343,186 - 27,352,200 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,024,080 - 30,033,357 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,024,081 - 30,033,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,961,818 - 31,970,830 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,564,093 - 27,573,372 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,237,507 - 28,246,407 (-)NCBICelera
Cytogenetic Map12q12NCBI
Kctd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,627,763 - 8,636,206 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,627,763 - 8,637,882 (+)NCBIChiLan1.0ChiLan1.0
KCTD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2681,942,145 - 81,988,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17130,269,315 - 130,328,801 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0759,392,366 - 59,435,993 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1773,687,965 - 73,697,728 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl773,687,952 - 73,697,728 (+)Ensemblpanpan1.1panPan2
KCTD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha62,764,741 - 2,791,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06869,955 - 896,567 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6869,908 - 986,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16804,950 - 831,471 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06807,116 - 833,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06978,947 - 1,005,464 (+)NCBIUU_Cfam_GSD_1.0
KCTD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,385,006 - 16,393,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,382,333 - 16,393,861 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,636,406 - 16,646,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,255,817 - 2,276,616 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl282,256,743 - 2,271,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607014,356,688 - 14,370,912 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026168   ⟹   ENSHGLP00000025939
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247408,598,309 - 8,609,696 (+)Ensembl
RefSeq Acc Id: XM_004839992   ⟹   XP_004840049
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247408,588,341 - 8,609,541 (+)NCBI
RefSeq Acc Id: XM_021254334   ⟹   XP_021109993
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247408,588,339 - 8,609,541 (+)NCBI
RefSeq Acc Id: XM_021254335   ⟹   XP_021109994
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247408,594,193 - 8,609,541 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840049 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109993 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109994 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025939
GenBank Protein JAN97553 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021109993   ⟸   XM_021254334
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004840049   ⟸   XM_004839992
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J2N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109994   ⟸   XM_021254335
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025939   ⟸   ENSHGLT00000026168


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018461 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026168 ENTREZGENE
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
KEGG Report hgl:101712678 UniProtKB/TrEMBL
NCBI Gene Kctd7 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD7 UniProtKB/TrEMBL
  POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A0P6J2N6 ENTREZGENE, UniProtKB/TrEMBL