Pcgf6 (polycomb group ring finger 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Pcgf6 (polycomb group ring finger 6) Rattus norvegicus
Analyze
Symbol: Pcgf6
Name: polycomb group ring finger 6
RGD ID: 1306904
Description: Predicted to enable metal ion binding activity. Predicted to be involved in chromatin remodeling and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Orthologous to human PCGF6 (polycomb group ring finger 6); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC309457; polycomb group RING finger protein 6; ring finger protein 134; Rnf134
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,866,709 - 255,886,306 (-)NCBIGRCr8
mRatBN7.21245,925,354 - 245,944,964 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,925,360 - 245,944,914 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1254,051,540 - 254,071,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,744,865 - 260,764,438 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,394,241 - 253,413,823 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,811,418 - 266,831,022 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,811,420 - 266,830,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,241,829 - 274,261,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41252,357,987 - 252,377,545 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11252,622,561 - 252,642,118 (-)NCBI
Celera1241,697,022 - 241,716,581 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA,ISO)
PcG protein complex  (IEA,ISO,ISS)
PRC1 complex  (IBA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8521824   PMID:12167161   PMID:15489334   PMID:19636380   PMID:21282530   PMID:26151332   PMID:28596365  


Genomics

Comparative Map Data
Pcgf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,866,709 - 255,886,306 (-)NCBIGRCr8
mRatBN7.21245,925,354 - 245,944,964 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,925,360 - 245,944,914 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1254,051,540 - 254,071,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,744,865 - 260,764,438 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,394,241 - 253,413,823 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,811,418 - 266,831,022 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,811,420 - 266,830,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,241,829 - 274,261,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41252,357,987 - 252,377,545 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11252,622,561 - 252,642,118 (-)NCBI
Celera1241,697,022 - 241,716,581 (-)NCBICelera
Cytogenetic Map1q54NCBI
PCGF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810103,302,796 - 103,351,140 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10103,302,796 - 103,351,144 (-)EnsemblGRCh38hg38GRCh38
GRCh3710105,062,553 - 105,110,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610105,052,543 - 105,100,881 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410105,052,543 - 105,100,881NCBI
Celera1098,802,479 - 98,850,828 (-)NCBICelera
Cytogenetic Map10q24.33NCBI
HuRef1098,693,204 - 98,741,643 (-)NCBIHuRef
CHM1_110105,346,724 - 105,395,054 (-)NCBICHM1_1
T2T-CHM13v2.010104,190,415 - 104,238,442 (-)NCBIT2T-CHM13v2.0
Pcgf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,022,056 - 47,039,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,022,056 - 47,039,345 (-)EnsemblGRCm39 Ensembl
GRCm381947,033,617 - 47,050,939 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,033,617 - 47,050,906 (-)EnsemblGRCm38mm10GRCm38
MGSCv371947,108,109 - 47,125,335 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,086,930 - 47,104,156 (-)NCBIMGSCv36mm8
Celera1947,801,827 - 47,819,682 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.11NCBI
Pcgf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,196,626 - 7,227,536 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,196,626 - 7,228,918 (+)NCBIChiLan1.0ChiLan1.0
PCGF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28115,188,317 - 115,236,309 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110115,193,649 - 115,241,653 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,901,760 - 99,949,733 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110103,353,439 - 103,426,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PCGF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12815,697,707 - 15,733,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2815,605,040 - 15,733,097 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,869,655 - 15,905,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02816,173,796 - 16,209,301 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2816,159,740 - 16,209,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12815,723,250 - 15,758,660 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,750,627 - 15,786,077 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,889,370 - 15,924,844 (-)NCBIUU_Cfam_GSD_1.0
Pcgf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,111,640 - 31,138,470 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,714,843 - 2,741,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,714,883 - 2,741,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCGF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14114,249,820 - 114,287,434 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114114,062,457 - 114,287,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214124,190,350 - 124,210,490 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCGF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1996,349,418 - 96,396,083 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl996,349,423 - 96,395,650 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604857,462,812 - 57,509,143 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcgf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248312,549,951 - 2,587,885 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcgf6
52 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:89
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000027450
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1245907761257976495Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat

Markers in Region
RH127851  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,925,573 - 245,925,776 (+)MAPPERmRatBN7.2
Rnor_6.01266,811,632 - 266,811,834NCBIRnor6.0
Rnor_5.01274,242,043 - 274,242,245UniSTSRnor5.0
RGSC_v3.41252,358,201 - 252,358,403UniSTSRGSC3.4
Celera1241,697,236 - 241,697,438UniSTS
RH 3.4 Map11631.8UniSTS
Cytogenetic Map1q54UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 8 24 18 10 18 66 18 39
Low 35 33 23 9 23 8 10 8 17 2 11 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000027450   ⟹   ENSRNOP00000027450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,925,360 - 245,944,914 (-)Ensembl
Rnor_6.0 Ensembl1266,811,420 - 266,830,976 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094399   ⟹   ENSRNOP00000077535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,925,360 - 245,944,914 (-)Ensembl
RefSeq Acc Id: NM_001013154   ⟹   NP_001013172
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,866,709 - 255,886,266 (-)NCBI
mRatBN7.21245,925,360 - 245,944,920 (-)NCBI
Rnor_6.01266,811,418 - 266,830,976 (-)NCBI
Rnor_5.01274,241,829 - 274,261,565 (-)NCBI
RGSC_v3.41252,357,987 - 252,377,545 (-)RGD
Celera1241,697,022 - 241,716,581 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231509   ⟹   XP_006231571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,866,709 - 255,886,304 (-)NCBI
mRatBN7.21245,925,354 - 245,944,961 (-)NCBI
Rnor_6.01266,811,418 - 266,831,021 (-)NCBI
Rnor_5.01274,241,829 - 274,261,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760437   ⟹   XP_008758659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,866,709 - 255,886,304 (-)NCBI
mRatBN7.21245,925,354 - 245,944,961 (-)NCBI
Rnor_6.01266,811,418 - 266,831,022 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760438   ⟹   XP_008758660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,866,709 - 255,886,306 (-)NCBI
mRatBN7.21245,925,354 - 245,944,964 (-)NCBI
Rnor_6.01266,811,418 - 266,831,022 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005487580
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,881,350 - 255,886,304 (-)NCBI
mRatBN7.21245,940,001 - 245,944,961 (-)NCBI
RefSeq Acc Id: XR_005487581
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,883,340 - 255,886,304 (-)NCBI
mRatBN7.21245,941,994 - 245,944,960 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001013172   ⟸   NM_001013154
- UniProtKB: Q5XI70 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006231571   ⟸   XM_006231509
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008758660   ⟸   XM_008760438
- Peptide Label: isoform X1
- UniProtKB: A0A8I5XW83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758659   ⟸   XM_008760437
- Peptide Label: isoform X2
- UniProtKB: A0A8L2QF06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027450   ⟸   ENSRNOT00000027450
RefSeq Acc Id: ENSRNOP00000077535   ⟸   ENSRNOT00000094399
Protein Domains
RAWUL   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI70-F1-model_v2 AlphaFold Q5XI70 1-351 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690975
Promoter ID:EPDNEW_R1499
Type:initiation region
Name:Pcgf6_1
Description:polycomb group ring finger 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01266,830,988 - 266,831,048EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306904 AgrOrtholog
BioCyc Gene G2FUF-55493 BioCyc
Ensembl Genes ENSRNOG00000020250 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027450.5 UniProtKB/TrEMBL
  ENSRNOT00000094399.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7111130 IMAGE-MGC_LOAD
InterPro PCGF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCGF6_RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:309457 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94892 IMAGE-MGC_LOAD
NCBI Gene 309457 ENTREZGENE
PANTHER POLYCOMB GROUP RING FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYCOMB GROUP RING FINGER PROTEIN 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pcgf6 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020250 RatGTEx
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5XW83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QF06 ENTREZGENE, UniProtKB/TrEMBL
  A6JHP3_RAT UniProtKB/TrEMBL
  PCGF6_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Pcgf6  polycomb group ring finger 6  Rnf134  ring finger protein 134  Symbol and Name updated 1299863 APPROVED
2005-12-06 Rnf134  ring finger protein 134  Rnf134_predicted  ring finger protein 134 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rnf134_predicted  ring finger protein 134 (predicted)      Symbol and Name status set to approved 70820 APPROVED