Symbol:
Pcgf6
Name:
polycomb group ring finger 6
RGD ID:
1550599
MGI Page
MGI
Description:
Predicted to enable protein domain specific binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Part of PcG protein complex. Is expressed in central nervous system; eye; limb; trunk somite; and urinary system. Orthologous to human PCGF6 (polycomb group ring finger 6).
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
4933407A11Rik; AI604840; MB; MBLR; Mel18 and Bmi1-like RING finger protein; Mel18- and Bmi1-like RING finger protein; MGC106622; polycomb group RING finger protein 6; ring finger protein 134; Rnf1; Rnf134
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
PCGF6 (polycomb group ring finger 6) HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):
Pcgf6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Pcgf6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
PCGF6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
PCGF6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Pcgf6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
PCGF6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
PCGF6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Pcgf6 (polycomb group ring finger 6) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Rattus norvegicus (Norway rat):
Pcgf6 (polycomb group ring finger 6)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
PCGF6 (polycomb group ring finger 6)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
pcgf6 (polycomb group ring finger 6)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid|ZFIN)
Xenopus tropicalis (tropical clawed frog):
pcgf6
Alliance
DIOPT (Ensembl Compara|Hieranoid|OrthoInspector|PhylomeDB|SonicParanoid)
Related Pseudogenes:
Gm9785
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 47,022,056 - 47,039,379 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 47,022,056 - 47,039,345 (-) Ensembl GRCm39 Ensembl GRCm38 19 47,033,617 - 47,050,939 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 47,033,617 - 47,050,906 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 47,108,109 - 47,125,335 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 47,086,930 - 47,104,156 (-) NCBI MGSCv36 mm8 Celera 19 47,801,827 - 47,819,682 (-) NCBI Celera Cytogenetic Map 19 C3 NCBI cM Map 19 39.11 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
1.
PRC1 complex diversity: where is it taking us?
Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
2.
Mouse brain organization revealed through direct genome-scale TF expression analysis.
Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3.
Functional annotation of a full-length mouse cDNA collection.
Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4.
MGDs mouse GO annotations
MGD data from the GO Consortium
5.
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
7.
Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put.
Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Pcgf6 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 47,022,056 - 47,039,379 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 47,022,056 - 47,039,345 (-) Ensembl GRCm39 Ensembl GRCm38 19 47,033,617 - 47,050,939 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 47,033,617 - 47,050,906 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 47,108,109 - 47,125,335 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 47,086,930 - 47,104,156 (-) NCBI MGSCv36 mm8 Celera 19 47,801,827 - 47,819,682 (-) NCBI Celera Cytogenetic Map 19 C3 NCBI cM Map 19 39.11 NCBI
PCGF6 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 103,302,796 - 103,351,140 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 103,302,796 - 103,351,144 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 105,062,553 - 105,110,897 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 105,052,543 - 105,100,881 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 105,052,543 - 105,100,881 NCBI Celera 10 98,802,479 - 98,850,828 (-) NCBI Celera Cytogenetic Map 10 q24.33 NCBI HuRef 10 98,693,204 - 98,741,643 (-) NCBI HuRef CHM1_1 10 105,346,724 - 105,395,054 (-) NCBI CHM1_1 T2T-CHM13v2.0 10 104,190,415 - 104,238,442 (-) NCBI T2T-CHM13v2.0
Pcgf6 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 255,866,709 - 255,886,306 (-) NCBI GRCr8 mRatBN7.2 1 245,925,354 - 245,944,964 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 245,925,360 - 245,944,914 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 254,051,540 - 254,071,097 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 260,744,865 - 260,764,438 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 253,394,241 - 253,413,823 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 266,811,418 - 266,831,022 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 266,811,420 - 266,830,976 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 274,241,829 - 274,261,565 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 252,357,987 - 252,377,545 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 252,622,561 - 252,642,118 (-) NCBI Celera 1 241,697,022 - 241,716,581 (-) NCBI Celera Cytogenetic Map 1 q54 NCBI
Pcgf6 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955485 7,196,626 - 7,227,536 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955485 7,196,626 - 7,228,918 (+) NCBI ChiLan1.0 ChiLan1.0
PCGF6 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 115,188,317 - 115,236,309 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 115,193,649 - 115,241,653 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 99,901,760 - 99,949,733 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 103,353,439 - 103,426,283 (-) NCBI panpan1.1 PanPan1.1 panPan2
PCGF6 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 28 15,697,707 - 15,733,177 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 28 15,605,040 - 15,733,097 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 28 15,869,655 - 15,905,116 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 28 16,173,796 - 16,209,301 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 28 16,159,740 - 16,209,313 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 28 15,723,250 - 15,758,660 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 28 15,750,627 - 15,786,077 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 28 15,889,370 - 15,924,844 (-) NCBI UU_Cfam_GSD_1.0
Pcgf6 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 31,111,640 - 31,138,470 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936600 2,714,843 - 2,741,697 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936600 2,714,883 - 2,741,418 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
PCGF6 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 114,249,820 - 114,287,434 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 114,062,457 - 114,287,458 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 124,190,350 - 124,210,490 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
PCGF6 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 96,349,418 - 96,396,083 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 96,349,423 - 96,395,650 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666048 57,462,812 - 57,509,143 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Pcgf6
.
Predicted Target Of
Count of predictions: 365 Count of miRNA genes: 254 Interacting mature miRNAs: 295 Transcripts: ENSMUST00000026032 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
13506250 Renmq1_m renal mercury accumulation QTL 1 (mouse) 19 27385594 61385705 Mouse 10412251 Mnp_m modifier of Niemann Pick type C1 (mouse) Not determined 19 20234314 54234461 Mouse 1302170 Tanidd1_m tally ho associated non-insulin dependednt diabetes mellitus 1 (mouse) Not determined 19 36752597 61420004 Mouse 1301466 T2dm2_m type 2 diabetes mellitus 2 (mouse) Not determined 19 38376050 61420004 Mouse 1301336 Alcp23_m alcohol preference locus 23 (mouse) Not determined 19 15912607 49912719 Mouse 1558876 W3q14_m weight 3 weeks QTL 14 (mouse) Not determined 19 22313326 53911504 Mouse 1302104 Lfp1_m long free running period 1 (mouse) Not determined 19 39184064 61420004 Mouse 1301633 Alcp24_m alcohol preference locus 24 (mouse) Not determined 19 15912607 49912719 Mouse 1301639 Stnn_m striatal neuron number (mouse) Not determined 19 33951952 61420004 Mouse 1301451 Ath16_m atherosclerosis 16 (mouse) Not determined 19 25426917 59427005 Mouse 1300683 Fembm7_m femoral bone morphometry 7 (mouse) Not determined 19 30141224 61420004 Mouse 10043896 Bw21_m body weight QTL 21 (mouse) Not determined 19 39596066 61420004 Mouse 4141659 Pbwg20_m postnatal body weight growth 20 (mouse) Not determined 19 21378705 55378928 Mouse 4141019 Tgq29_m triglyceride QTL 29 (mouse) Not determined 34596786 61420004 Mouse 1301942 Pas13_m pulmonary adenoma susceptibility 13 (mouse) Not determined 19 30141231 61420004 Mouse 10413881 Moe2_m modifier of epilepsy 2 (mouse) 19 14923016 48923138 Mouse 1302004 Lfp2_m long free running period 2 (mouse) Not determined 19 18295162 52295381 Mouse 12790634 Ebm1_m Epidermolysis Bullosa modifier 1 (mouse) 19 24988439 58988439 Mouse 1300856 Nobq2_m New Zealand obese QTL 2 (mouse) Not determined 19 30897880 61420004 Mouse 4141138 Femwf11_m femur work to failure 11 (mouse) Not determined 28140348 61420004 Mouse 4141650 Chldq9_m cholesterol and HDL QTL 9 (mouse) Not determined 19 37882982 61420004 Mouse 1301410 Cd8mts6_m CD8 memory T cell subset 6 (mouse) Not determined 19 30141231 61420004 Mouse 4142343 Moen2_m modifier of engrailed QTL 2 (mouse) Not determined 19 20234314 54234461 Mouse 1300585 Pgia12_m proteoglycan induced arthritis 12 (mouse) Not determined 19 42586859 61420004 Mouse 1302063 Eae19_m experimental allergic encephalomyelitis 19 (mouse) Not determined 19 18295162 52295381 Mouse 1301741 Lith2_m lithogenic gene 2 (mouse) Not determined 19 32992158 61420004 Mouse
UniSTS:237966
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 19 47,034,231 - 47,034,453 UniSTS GRCm38 MGSCv37 19 47,108,721 - 47,108,943 UniSTS GRCm37 Celera 19 47,802,439 - 47,802,661 UniSTS Cytogenetic Map 19 C3 UniSTS
AI604840
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 19 47,033,856 - 47,033,992 UniSTS GRCm38 MGSCv37 19 47,108,346 - 47,108,482 UniSTS GRCm37 Celera 19 47,802,064 - 47,802,200 UniSTS Cytogenetic Map 19 C3 UniSTS Whitehead/MRC_RH 19 469.52 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSMUST00000026032 ⟹ ENSMUSP00000026032
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 47,022,056 - 47,039,343 (-) Ensembl GRCm38.p6 Ensembl 19 47,033,617 - 47,050,904 (-) Ensembl
Ensembl Acc Id:
ENSMUST00000235370
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 47,025,242 - 47,037,926 (-) Ensembl GRCm38.p6 Ensembl 19 47,036,803 - 47,049,487 (-) Ensembl
Ensembl Acc Id:
ENSMUST00000235633 ⟹ ENSMUSP00000157869
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 47,022,058 - 47,039,345 (-) Ensembl GRCm38.p6 Ensembl 19 47,033,619 - 47,050,906 (-) Ensembl
Ensembl Acc Id:
ENSMUST00000236339
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 19 47,029,263 - 47,039,329 (-) Ensembl GRCm38.p6 Ensembl 19 47,040,824 - 47,050,890 (-) Ensembl
RefSeq Acc Id:
NM_001360632 ⟹ NP_001347561
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,345 (-) NCBI GRCm38 19 47,033,617 - 47,050,906 (-) NCBI
Sequence:
ACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACGAGGCTGAGACGGACGCCACGGAAAACAAGCGCGC
hide sequence
RefSeq Acc Id:
NM_027654 ⟹ NP_081930
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,345 (-) NCBI GRCm38 19 47,033,617 - 47,050,906 (-) NCBI MGSCv37 19 47,108,109 - 47,125,335 (-) RGD Celera 19 47,801,827 - 47,819,682 (-) RGD cM Map 19 ENTREZGENE
Sequence:
ACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAAC
hide sequence
RefSeq Acc Id:
NR_133574
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,345 (-) NCBI GRCm38 19 47,033,617 - 47,050,906 (-) NCBI
Sequence:
ACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACGAGGCTGAGACGGACGCCACGGAAAACAAGCGCGC
hide sequence
RefSeq Acc Id:
NR_153762
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,345 (-) NCBI GRCm38 19 47,033,617 - 47,050,906 (-) NCBI
Sequence:
ACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAAC
hide sequence
RefSeq Acc Id:
XM_006527338 ⟹ XP_006527401
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,379 (-) NCBI GRCm38 19 47,033,617 - 47,050,939 (-) NCBI
Sequence:
GGCCTCTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACG
hide sequence
RefSeq Acc Id:
XM_030251075 ⟹ XP_030106935
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,378 (-) NCBI GRCm38 19 47,033,617 - 47,050,939 (-) NCBI
Sequence:
GCCTCTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGC
hide sequence
RefSeq Acc Id:
XM_036161687 ⟹ XP_036017580
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,036,409 - 47,039,374 (-) NCBI
Sequence:
CTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACGAGGCT
hide sequence
RefSeq Acc Id:
XR_001782614
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,376 (-) NCBI GRCm38 19 47,033,617 - 47,050,938 (-) NCBI
Sequence:
CTCTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTA
hide sequence
RefSeq Acc Id:
XR_003952814
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,376 (-) NCBI GRCm38 19 47,033,617 - 47,050,937 (-) NCBI
Sequence:
CTCTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACGAGG
hide sequence
RefSeq Acc Id:
XR_003952816
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,376 (-) NCBI GRCm38 19 47,033,617 - 47,050,937 (-) NCBI
Sequence:
CTCTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACGAGG
hide sequence
RefSeq Acc Id:
XR_004940173
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,374 (-) NCBI
Sequence:
CTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACGAGGCT
hide sequence
RefSeq Acc Id:
XR_386508
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 19 47,022,056 - 47,039,376 (-) NCBI GRCm38 19 47,033,617 - 47,050,938 (-) NCBI
Sequence:
CTCTGCGGAGCGCCGGCGCCTGCGCACTGGTACGAAAGGGGGCTCGTGCTCAACTCGCGCGCTAGCCGTCCGACTCGCCTTGCCTCGCTCTCAACTCGCCAGATTTCTGATCCCCGCCATGGACGAGG
hide sequence
RefSeq Acc Id:
NP_081930 ⟸ NM_027654
- Peptide Label:
isoform 1
- UniProtKB:
Q99NA9 (UniProtKB/Swiss-Prot)
- Sequence:
MDEAETDATENKRASEAKRASAMPPPPPPPPPISPPALIPAPAAGEEGPASLGQAGAAGCSRSRPPALEPERSLGRLRGRFEDYDEELEEEEEMEEEEEEEEEMSHFSLRLESGRADSEDEEERLINL
hide sequence
RefSeq Acc Id:
XP_006527401 ⟸ XM_006527338
- Peptide Label:
isoform X1
- UniProtKB:
Q3V1H7 (UniProtKB/TrEMBL)
- Sequence:
MDEAETDATENKRASEAKRASAMPPPPPPPPPISPPALIPAPAAGEEGPASLGQAGAAGCSRSRPPALEPERSLGRLRGRFEDYDEELEEEEEMEEEEEEEEEMSHFSLRLESGRADSEDEEERLINL
hide sequence
RefSeq Acc Id:
XP_030106935 ⟸ XM_030251075
- Peptide Label:
isoform X2
- UniProtKB:
Q3V1H7 (UniProtKB/TrEMBL)
RefSeq Acc Id:
NP_001347561 ⟸ NM_001360632
- Peptide Label:
isoform 2
Ensembl Acc Id:
ENSMUSP00000026032 ⟸ ENSMUST00000026032
Ensembl Acc Id:
ENSMUSP00000157869 ⟸ ENSMUST00000235633
RefSeq Acc Id:
XP_036017580 ⟸ XM_036161687
- Peptide Label:
isoform X3
- UniProtKB:
A0A494B9Z3 (UniProtKB/TrEMBL)
RGD ID: 13679718 Promoter ID: EPDNEW_M24008 Type: initiation region Name: Pcgf6_1 Description: Mus musculus polycomb group ring finger 6 , transcript variant3, mRNA. SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Mouse Assembly Chr Position (strand) Source GRCm38 19 47,050,892 - 47,050,952 EPDNEW
RGD ID: 6830280 Promoter ID: MM_KWN:27268 Type: CpG-Island SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen Transcripts: NM_027654, UC008HUM.1 Position: Mouse Assembly Chr Position (strand) Source MGSCv36 19 47,124,896 - 47,125,482 (-) MPROMDB
