Pcgf6 (polycomb group ring finger 6) - Rat Genome Database

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Gene: Pcgf6 (polycomb group ring finger 6) Mus musculus
Analyze
Symbol: Pcgf6
Name: polycomb group ring finger 6
RGD ID: 1550599
MGI Page MGI
Description: Predicted to enable protein domain specific binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Part of PcG protein complex. Is expressed in central nervous system; eye; limb; trunk somite; and urinary system. Orthologous to human PCGF6 (polycomb group ring finger 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933407A11Rik; AI604840; MB; MBLR; Mel18 and Bmi1-like RING finger protein; Mel18- and Bmi1-like RING finger protein; MGC106622; polycomb group RING finger protein 6; ring finger protein 134; Rnf1; Rnf134
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm9785  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,022,056 - 47,039,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,022,056 - 47,039,345 (-)EnsemblGRCm39 Ensembl
GRCm381947,033,617 - 47,050,939 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,033,617 - 47,050,906 (-)EnsemblGRCm38mm10GRCm38
MGSCv371947,108,109 - 47,125,335 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,086,930 - 47,104,156 (-)NCBIMGSCv36mm8
Celera1947,801,827 - 47,819,682 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IDA,ISO)
PcG protein complex  (IDA,ISO,ISS)
PRC1 complex  (IBA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Additional References at PubMed
PMID:8521824   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12167161   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17296600  
PMID:18287559   PMID:18311137   PMID:20059953   PMID:20362541   PMID:21873635   PMID:22325148   PMID:22496869   PMID:22770845   PMID:22988430   PMID:23892456   PMID:24457600   PMID:25187489  
PMID:27247273   PMID:27498878   PMID:28049731   PMID:28304275   PMID:28596365   PMID:29727681   PMID:29795351   PMID:31029541   PMID:31041782   PMID:32482889   PMID:33821003   PMID:35422437  
PMID:37158107   PMID:38228142  


Genomics

Comparative Map Data
Pcgf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,022,056 - 47,039,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,022,056 - 47,039,345 (-)EnsemblGRCm39 Ensembl
GRCm381947,033,617 - 47,050,939 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,033,617 - 47,050,906 (-)EnsemblGRCm38mm10GRCm38
MGSCv371947,108,109 - 47,125,335 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,086,930 - 47,104,156 (-)NCBIMGSCv36mm8
Celera1947,801,827 - 47,819,682 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.11NCBI
PCGF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810103,302,796 - 103,351,140 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10103,302,796 - 103,351,144 (-)EnsemblGRCh38hg38GRCh38
GRCh3710105,062,553 - 105,110,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610105,052,543 - 105,100,881 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410105,052,543 - 105,100,881NCBI
Celera1098,802,479 - 98,850,828 (-)NCBICelera
Cytogenetic Map10q24.33NCBI
HuRef1098,693,204 - 98,741,643 (-)NCBIHuRef
CHM1_110105,346,724 - 105,395,054 (-)NCBICHM1_1
T2T-CHM13v2.010104,190,415 - 104,238,442 (-)NCBIT2T-CHM13v2.0
Pcgf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,866,709 - 255,886,306 (-)NCBIGRCr8
mRatBN7.21245,925,354 - 245,944,964 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,925,360 - 245,944,914 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1254,051,540 - 254,071,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,744,865 - 260,764,438 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,394,241 - 253,413,823 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,811,418 - 266,831,022 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,811,420 - 266,830,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,241,829 - 274,261,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41252,357,987 - 252,377,545 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11252,622,561 - 252,642,118 (-)NCBI
Celera1241,697,022 - 241,716,581 (-)NCBICelera
Cytogenetic Map1q54NCBI
Pcgf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,196,626 - 7,227,536 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,196,626 - 7,228,918 (+)NCBIChiLan1.0ChiLan1.0
PCGF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28115,188,317 - 115,236,309 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110115,193,649 - 115,241,653 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,901,760 - 99,949,733 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110103,353,439 - 103,426,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PCGF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12815,697,707 - 15,733,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2815,605,040 - 15,733,097 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,869,655 - 15,905,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02816,173,796 - 16,209,301 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2816,159,740 - 16,209,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12815,723,250 - 15,758,660 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,750,627 - 15,786,077 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,889,370 - 15,924,844 (-)NCBIUU_Cfam_GSD_1.0
Pcgf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,111,640 - 31,138,470 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,714,843 - 2,741,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,714,883 - 2,741,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCGF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14114,249,820 - 114,287,434 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114114,062,457 - 114,287,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214124,190,350 - 124,210,490 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCGF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1996,349,418 - 96,396,083 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl996,349,423 - 96,395,650 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604857,462,812 - 57,509,143 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcgf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248312,549,951 - 2,587,885 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcgf6
741 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:365
Count of miRNA genes:254
Interacting mature miRNAs:295
Transcripts:ENSMUST00000026032
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse

Markers in Region
UniSTS:237966  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381947,034,231 - 47,034,453UniSTSGRCm38
MGSCv371947,108,721 - 47,108,943UniSTSGRCm37
Celera1947,802,439 - 47,802,661UniSTS
Cytogenetic Map19C3UniSTS
AI604840  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381947,033,856 - 47,033,992UniSTSGRCm38
MGSCv371947,108,346 - 47,108,482UniSTSGRCm37
Celera1947,802,064 - 47,802,200UniSTS
Cytogenetic Map19C3UniSTS
Whitehead/MRC_RH19469.52UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_133574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001782614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_386508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB047007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000026032   ⟹   ENSMUSP00000026032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1947,022,056 - 47,039,343 (-)Ensembl
GRCm38.p6 Ensembl1947,033,617 - 47,050,904 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1947,025,242 - 47,037,926 (-)Ensembl
GRCm38.p6 Ensembl1947,036,803 - 47,049,487 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235633   ⟹   ENSMUSP00000157869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1947,022,058 - 47,039,345 (-)Ensembl
GRCm38.p6 Ensembl1947,033,619 - 47,050,906 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1947,029,263 - 47,039,329 (-)Ensembl
GRCm38.p6 Ensembl1947,040,824 - 47,050,890 (-)Ensembl
RefSeq Acc Id: NM_001360632   ⟹   NP_001347561
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,345 (-)NCBI
GRCm381947,033,617 - 47,050,906 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027654   ⟹   NP_081930
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,345 (-)NCBI
GRCm381947,033,617 - 47,050,906 (-)NCBI
MGSCv371947,108,109 - 47,125,335 (-)RGD
Celera1947,801,827 - 47,819,682 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_133574
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,345 (-)NCBI
GRCm381947,033,617 - 47,050,906 (-)NCBI
Sequence:
RefSeq Acc Id: NR_153762
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,345 (-)NCBI
GRCm381947,033,617 - 47,050,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527338   ⟹   XP_006527401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,379 (-)NCBI
GRCm381947,033,617 - 47,050,939 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251075   ⟹   XP_030106935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,378 (-)NCBI
GRCm381947,033,617 - 47,050,939 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161687   ⟹   XP_036017580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,036,409 - 47,039,374 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001782614
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,376 (-)NCBI
GRCm381947,033,617 - 47,050,938 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952814
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,376 (-)NCBI
GRCm381947,033,617 - 47,050,937 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952816
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,376 (-)NCBI
GRCm381947,033,617 - 47,050,937 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004940173
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,374 (-)NCBI
Sequence:
RefSeq Acc Id: XR_386508
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391947,022,056 - 47,039,376 (-)NCBI
GRCm381947,033,617 - 47,050,938 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081930   ⟸   NM_027654
- Peptide Label: isoform 1
- UniProtKB: Q99NA9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006527401   ⟸   XM_006527338
- Peptide Label: isoform X1
- UniProtKB: Q3V1H7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030106935   ⟸   XM_030251075
- Peptide Label: isoform X2
- UniProtKB: Q3V1H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347561   ⟸   NM_001360632
- Peptide Label: isoform 2
Ensembl Acc Id: ENSMUSP00000026032   ⟸   ENSMUST00000026032
Ensembl Acc Id: ENSMUSP00000157869   ⟸   ENSMUST00000235633
RefSeq Acc Id: XP_036017580   ⟸   XM_036161687
- Peptide Label: isoform X3
- UniProtKB: A0A494B9Z3 (UniProtKB/TrEMBL)
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99NA9-F1-model_v2 AlphaFold Q99NA9 1-353 view protein structure

Promoters
RGD ID:13679718
Promoter ID:EPDNEW_M24008
Type:initiation region
Name:Pcgf6_1
Description:Mus musculus polycomb group ring finger 6 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381947,050,892 - 47,050,952EPDNEW
RGD ID:6830280
Promoter ID:MM_KWN:27268
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_027654,   UC008HUM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361947,124,896 - 47,125,482 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918291 AgrOrtholog
Ensembl Genes ENSMUSG00000025050 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026032 ENTREZGENE
  ENSMUST00000026032.7 UniProtKB/Swiss-Prot
  ENSMUST00000235633 ENTREZGENE
  ENSMUST00000235633.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PcG_RING_finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCGF6_RAWUL UniProtKB/Swiss-Prot
  RAWUL UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71041 UniProtKB/Swiss-Prot
MGD MGI:1918291 ENTREZGENE
NCBI Gene 71041 ENTREZGENE
PANTHER POLYCOMB GROUP RING FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYCOMB GROUP RING FINGER PROTEIN 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RAWUL UniProtKB/Swiss-Prot
  zf-C3HC4_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pcgf6 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A494B9Z3 ENTREZGENE, UniProtKB/TrEMBL
  PCGF6_MOUSE UniProtKB/Swiss-Prot
  Q3V1H7 ENTREZGENE, UniProtKB/TrEMBL
  Q99NA9 ENTREZGENE