Symbol:
Pcgf6
Name:
polycomb group ring finger 6
RGD ID:
12602749
Description:
ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN chromatin remodeling (inferred); negative regulation of DNA-templated transcription (inferred); negative regulation of transcription by RNA polymerase II (inferred); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN nucleus (inferred); PcG protein complex (inferred); PRC1 complex (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
polycomb group RING finger protein 6
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 31,111,640 - 31,138,470 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936600 2,714,843 - 2,741,697 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936600 2,714,883 - 2,741,418 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Pcgf6 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 31,111,640 - 31,138,470 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936600 2,714,843 - 2,741,697 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936600 2,714,883 - 2,741,418 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
PCGF6 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 103,302,796 - 103,351,140 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 103,302,796 - 103,351,144 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 105,062,553 - 105,110,897 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 105,052,543 - 105,100,881 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 105,052,543 - 105,100,881 NCBI Celera 10 98,802,479 - 98,850,828 (-) NCBI Celera Cytogenetic Map 10 q24.33 NCBI HuRef 10 98,693,204 - 98,741,643 (-) NCBI HuRef CHM1_1 10 105,346,724 - 105,395,054 (-) NCBI CHM1_1 T2T-CHM13v2.0 10 104,190,415 - 104,238,442 (-) NCBI T2T-CHM13v2.0
Pcgf6 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 47,022,056 - 47,039,379 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 47,022,056 - 47,039,345 (-) Ensembl GRCm39 Ensembl GRCm38 19 47,033,617 - 47,050,939 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 47,033,617 - 47,050,906 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 47,108,109 - 47,125,335 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 47,086,930 - 47,104,156 (-) NCBI MGSCv36 mm8 Celera 19 47,801,827 - 47,819,682 (-) NCBI Celera Cytogenetic Map 19 C3 NCBI cM Map 19 39.11 NCBI
Pcgf6 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 255,866,709 - 255,886,306 (-) NCBI GRCr8 mRatBN7.2 1 245,925,354 - 245,944,964 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 245,925,360 - 245,944,914 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 254,051,540 - 254,071,097 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 260,744,865 - 260,764,438 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 253,394,241 - 253,413,823 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 266,811,418 - 266,831,022 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 266,811,420 - 266,830,976 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 274,241,829 - 274,261,565 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 252,357,987 - 252,377,545 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 252,622,561 - 252,642,118 (-) NCBI Celera 1 241,697,022 - 241,716,581 (-) NCBI Celera Cytogenetic Map 1 q54 NCBI
Pcgf6 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955485 7,196,626 - 7,227,536 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955485 7,196,626 - 7,228,918 (+) NCBI ChiLan1.0 ChiLan1.0
PCGF6 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 115,188,317 - 115,236,309 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 115,193,649 - 115,241,653 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 99,901,760 - 99,949,733 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 103,353,439 - 103,426,283 (-) NCBI panpan1.1 PanPan1.1 panPan2
PCGF6 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 28 15,697,707 - 15,733,177 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 28 15,605,040 - 15,733,097 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 28 15,869,655 - 15,905,116 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 28 16,173,796 - 16,209,301 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 28 16,159,740 - 16,209,313 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 28 15,723,250 - 15,758,660 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 28 15,750,627 - 15,786,077 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 28 15,889,370 - 15,924,844 (-) NCBI UU_Cfam_GSD_1.0
PCGF6 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 114,249,820 - 114,287,434 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 114,062,457 - 114,287,458 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 124,190,350 - 124,210,490 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
PCGF6 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 96,349,418 - 96,396,083 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 96,349,423 - 96,395,650 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666048 57,462,812 - 57,509,143 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Pcgf6 (Heterocephalus glaber - naked mole-rat)
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000014519 ⟹ ENSSTOP00000013010
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936600 2,714,843 - 2,741,697 (+) Ensembl
RefSeq Acc Id:
XM_005333606 ⟹ XP_005333663
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,111,645 - 31,138,470 (+) NCBI SpeTri2.0 NW_004936600 2,714,883 - 2,741,418 (+) NCBI
Sequence:
CTGAACTCCCGCGCTCTCCCGTCGCGGCACTTAGCTTTTCAGGTCCGATTTTTGCCGGGGCCATGGAAGGGGTCGCGGCGATCACGGCAGGCAACGCGGGCGCTGCCAAGGCGGAGGGAGCCGCAGTC ATGCCGCCGCCGCCTCCCGTGTCCCCACCTGCCCTCACCCCGCCGCCCGTGGCCGGCGAGGAGGGCCCGGCTCCTCTGCCCGAGGTGGGGGCTCCAGGCTGCTCCGGCTCCCGGCCCCCTGAGTTAGA GCCCGAGCGCAGCCTGGGCCGCTTGAGGGGCCGCTTCGAAGACTACGACGAGGAGCTGGAAGAGGATGAGGAGTTGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGCTGAGCCACTTCTCGCTGAGGC TGGAAGGGGGCCGGCCGGACTCTGAGGACGAAGAGGAGCGCCTGATTAATCTTGCTGAGCTGACACCATATATCTTGTGTTCCATTTGCAAGGGTTATTTAATAGATGCAACTACCATTACAGAATGT CTTCATACGTTTTGTAAAAGCTGCATTGTAAGACATTTTTACTATAGCAACAGATGTCCAAAATGCAACGTAGTTGTACATCAGACACAACCACTTTACAATATAAGGTTGGACCGACAATTACAAGA TATAGTGTACAAATTAGTGATCAATCTAGAGGAAAGAGAAAAAAAGCAAATGCATGATTTCTATAAAGAAAGAGGTCTAGAAGTACCTAAACCTGCTGTTCCACAGTCAGTCCCTTCAAGCAAAGGAA GAACTAAGAAAGTCCTAGAATCAGTATTTCGTATTCCACCTGAACTTGACATGTCTTTATTACTGGAGTTCATTGGTGCTAATGAAGGCACGGGACATTTTAAGCCATTAGAAAAGAAGTTTGTTCGA GTTTCAGGAGAAGCCACTATTGGACATGTAGAAAAATTCCTCCGAAGAAAAATGGGTCTTGATCCAGCTTGTCAGGTAGATATCATCTGTGGTGATCACTTGCTGGAGCAGTACCAGACTCTAAGGGA GATCCGACGTGCAATAGGTGATGCAGCAATGCAAGATGGTCTGCTTGTCCTTCATTATGGTCTTGTGGTTTCTCCTCTGAAAATAACTTGAAGATGCTAGGCATATTATGAGGAAGGAAGCAAACAAA GTAAGGAAATTTCTACAGGACTGTATTTCACCAAAGATTTCCACAAAACATGTAATCACTACCACGTTGTGCTGTTCAAGACATACCTTATCTATTTTCAGCACCAAAAATCCTAAGTACAATTGGAA TGAAGGAATGCACCTGTTTCACTAGAGACTATATGTAAAAAGCACTAGAGCTCAGGGGAATTTTTCCAAAACAGCATATTTTAAAATTCCGTATACTTTGATGTTGATTTTTGCTTCCCATCTTTGAG GTAAAGTGATCACTGTTTTCTCCTTTGTTGAGCCATATCCCTTTAAAGTTGGCAGTAAGGATTCTGTTCTGTGGAACAGCATCAGTTGGACAGTCATCCTTTTGGGAAAAAGAGGTATGCTTTTGAAT GGGAGATTCAAAGCCAGTCTTTGTTAAACCACAGGGTATACTCTCAAAAGACCAAAACTACTGGCTGCTTTTGTATTTGCCATCATATTTTAAACTTGTAGAGTTTCCCCCCCCCTTAAACCAGCAAT ACTACTAAAGAAATGTTTGTTCATAAAATGGATGAATTATCATTATCTGTGTGAAGACACTGTGTCATAAGCCTTCAGTGTAATAAGACTTCTTAACATATCTTACAATAAGAGGTGCTTATTTGTGA TGACATATTTAATTTTATTTGCATACAAAGTATGATTTGTTGATAACCTGTAATGGCACTCCTTCTGAAAGTAATAATAAAACATTTCAGGTGAATTTCAGAAGTTTACAGAATACTTTTTGTTTCCT CAGCAAGTCAGCTTAATATTCA
hide sequence
RefSeq Acc Id:
XM_040273052 ⟹ XP_040128986
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,111,641 - 31,138,470 (+) NCBI
RefSeq Acc Id:
XM_040273053 ⟹ XP_040128987
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,111,642 - 31,138,470 (+) NCBI
RefSeq Acc Id:
XM_040273054 ⟹ XP_040128988
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,111,644 - 31,138,470 (+) NCBI
RefSeq Acc Id:
XR_005728240
Type:
NON-CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,111,640 - 31,133,702 (+) NCBI
RefSeq Acc Id:
XP_005333663 ⟸ XM_005333606
- Peptide Label:
isoform X4
- UniProtKB:
I3MN33 (UniProtKB/TrEMBL)
- Sequence:
MEGVAAITAGNAGAAKAEGAAVMPPPPPVSPPALTPPPVAGEEGPAPLPEVGAPGCSGSRPPELEPERSLGRLRGRFEDYDEELEEDEELEEEEEEEEEELSHFSLRLEGGRPDSEDEEERLINLAEL TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNVVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQSVPSSKGRTKKVLESVFRIPPELDMSLL LEFIGANEGTGHFKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLEQYQTLREIRRAIGDAAMQDGLLVLHYGLVVSPLKIT
hide sequence
RefSeq Acc Id:
XP_040128986 ⟸ XM_040273052
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_040128987 ⟸ XM_040273053
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_040128988 ⟸ XM_040273054
- Peptide Label:
isoform X3
Ensembl Acc Id:
ENSSTOP00000013010 ⟸ ENSSTOT00000014519