Spacdr (sperm acrosome developmental regulator)

Gene: Spacdr (sperm acrosome developmental regulator) Rattus norvegicus

Analyze

Symbol:

Spacdr (Ensembl: Tsc22d4)

Name:

sperm acrosome developmental regulator (Ensembl:TSC22 domain family, member 4)

RGD ID:

11442159

Description:

Predicted to be involved in spermatid development. Predicted to act upstream of or within response to osmotic stress. Predicted to be located in acrosomal vesicle and nucleus. Orthologous to human SPACDR (sperm acrosome developmental regulator); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; cadmium dichloride; gentamycin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C12H7orf61; chromosome 12 open reading frame, human C7orf61; LOC100362783; uncharacterized protein C7orf61 homolog; uncharacterized protein LOC100362783

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	24,567,407 - 24,573,586 (-)	NCBI		GRCr8
mRatBN7.2	12	18,930,608 - 18,936,787 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	18,914,398 - 18,952,008 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	20,085,748 - 20,091,916 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	20,698,623 - 20,704,791 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	19,762,952 - 19,769,120 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	21,740,057 - 21,746,236 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	21,722,075 - 21,761,487 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	12	22,000,805 - 22,006,533 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	23,760,925 - 23,767,104 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	19,828,641 - 19,834,821 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	20,736,519 - 20,742,694 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

cadmium dichloride (EXP)

chlorpyrifos (ISO)

copper atom (ISO)

copper(0) (ISO)

disulfiram (ISO)

gentamycin (EXP)

Licochalcone B (ISO)

methidathion (ISO)

methylisothiazolinone (ISO)

paracetamol (EXP)

Theaflavin 3,3'-digallate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IEA)

response to osmotic stress (ISO)

spermatid development (ISO,ISS)

Cellular Component

acrosomal vesicle (ISO,ISS)

cytoplasm (ISO)

nucleus (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:21630459

Genomics

Comparative Map Data

Spacdr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	24,567,407 - 24,573,586 (-)	NCBI		GRCr8
mRatBN7.2	12	18,930,608 - 18,936,787 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	18,914,398 - 18,952,008 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	20,085,748 - 20,091,916 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	20,698,623 - 20,704,791 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	19,762,952 - 19,769,120 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	21,740,057 - 21,746,236 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	21,722,075 - 21,761,487 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	12	22,000,805 - 22,006,533 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	23,760,925 - 23,767,104 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	19,828,641 - 19,834,821 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	20,736,519 - 20,742,694 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

SPACDR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	100,456,620 - 100,464,260 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	100,456,620 - 100,464,260 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	100,054,243 - 100,061,883 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	99,892,174 - 99,899,830 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	94,784,037 - 94,791,693 (-)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	94,687,679 - 94,695,295 (-)	NCBI		HuRef
CHM1_1	7	99,984,854 - 99,992,509 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	101,696,698 - 101,704,342 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	99,414,322 - 99,421,978 (-)	NCBI

Tsc22d4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	137,759,963 - 137,766,715 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	137,743,992 - 137,766,712 (+)	Ensembl		GRCm39 Ensembl
Cytogenetic Map	5	G2	NCBI

Spacdr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955410	31,509,985 - 31,513,231 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPACDR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	118,369,929 - 118,379,613 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	166,634,561 - 166,644,245 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	92,485,588 - 92,493,539 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1 Ensembl	7	105,887,295 - 105,894,117 (-)	Ensembl	panpan1.1		panPan2

TSC22D4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	9,207,925 - 9,211,888 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	9,197,197 - 9,211,885 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	10,912,469 - 10,916,431 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	9,141,984 - 9,145,946 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	9,126,041 - 9,145,943 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	8,994,455 - 8,998,407 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	8,972,008 - 8,975,962 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	9,154,375 - 9,158,336 (+)	NCBI		UU_Cfam_GSD_1.0

Spacdr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,498,425 - 133,502,616 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	533,916 - 538,031 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	533,982 - 538,847 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPACDR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	12,749,326 - 12,752,096 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	12,749,795 - 12,751,957 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	3,543,057 - 3,550,599 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spacdr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624739	497,784 - 539,722 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spacdr
16 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13008296	19212979	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	15025183	20794014	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	15550826	38478808	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	15872653	32974238	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000001869 ⟹ ENSRNOP00000001869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	18,930,608 - 18,936,787 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000039280 ⟹ ENSRNOP00000033658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	18,939,150 - 18,952,008 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000059592 ⟹ ENSRNOP00000056350

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	18,939,158 - 18,940,736 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000059593 ⟹ ENSRNOP00000056351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	22,000,805 - 22,006,533 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082910 ⟹ ENSRNOP00000071995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	18,930,608 - 18,952,008 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105126 ⟹ ENSRNOP00000079951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	18,914,398 - 18,952,008 (-)	Ensembl

RefSeq Acc Id:

NM_001271236 ⟹ NP_001258165

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	24,567,407 - 24,573,586 (-)	NCBI
mRatBN7.2	12	18,930,608 - 18,936,787 (-)	NCBI

Sequence:

show sequence

AGGGAGGGGAGGAAGGGCCTGTCATGAGTCATTGGGGGGCACGCCCCTTTTGGATTTCTTATTT
CTTCCTTCGATACCGTGCTTGAAACTCCTCAGTACCCGCAAGTCCTCTCTGGTGGTGGCCATTG
GCCCATAGCCTTTCCCACCTACACCTCAAATGCTCACTTTGTACTATACTTTGGACTTGTGTCA
AGAGAGATAGCTGTGTGGTCATGAGGTTCTTGAGATGGATTAGGCAAATTTGGCGAAAGGTCCC
CAATTGGGTCCTGTTCTGGAAACACCTAGCCAAGCCAGGCCTGTCTGATCAGCGTGAGAAGCAT
CTGTTGAAGGGACCGGAGAAGACTTCCAAGGACTTTGACACTGTAAAGTTGGCCAACGCCCAAA
AAGAGGACATGGTCTCAGACCTGGATGTGTGCCCAGGGGTGCTGCGCTCAGTCAAGGAAAGATC
TCCTTTGCATGATCGAGAGAGCCGTTCCAGTCGTGACAGCCGTTCCCTGATGACCGTAGTCAAT
TCAGTTTCTACGTTCATGTTCTCGGTGCTGCAGTCCGGCTGGCGATTGTGTAGGTGGAAGTCTT
CTATGAGTACTGGCAAAGTTTCCTCCCATACGAGGACCGGGTCAGCCTTGGGGACGCCAGAGGC
TGAGATGCTGCGGGAAGTGTACTTGGTGCTCTGGGTCATTCGCAAACAACTAAGAGAGCTGGCT
CGCAGGCAAGAGAGGCGCAGACGGCGCCGTATGCGGTCTCATGCCTCCCATACTTCCCGTCACT
CCGAATCAGTGCAGGGCCTCAAACATGATGCCCGAAGTCCCCTCTAGGCAGGGGAGCCCCAGAT
CCTTTGAAAGTCTCCACCTCACTCTTACGGAAGGTTGACAGGAAGGGTTCAGTGGCCGTCAGGC
CAGAACTGCTGGTGAGGAGACCATGGTGTCATATCTCACTGGAACCCCAAGACCAGGCCTGGGG
TTGAACACGCTCCCCTTCTCTGTGTTTATTCAAAATTTTTTTAAAAAATAAATTATCTAAATTT
TGAGAAATAAATACCGGATGTTTCTGAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001258165	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79190	(Get FASTA)	NCBI Sequence Viewer
	EDM13239	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001869
	ENSRNOP00000001869.5
	ENSRNOP00000056350.3
	ENSRNOP00000071995.2
	ENSRNOP00000079951.1
GenBank Protein	Q6AY52	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

ENSRNOP00000056351 ⟸ ENSRNOT00000059593

RefSeq Acc Id:

NP_001258165 ⟸ NM_001271236

- UniProtKB:

Q6AY52 (UniProtKB/Swiss-Prot), A0A8L2UHH4 (UniProtKB/TrEMBL), A6J000 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRFLRWIRQIWRKVPNWVLFWKHLAKPGLSDQREKHLLKGPEKTSKDFDTVKLANAQKEDMVSD
LDVCPGVLRSVKERSPLHDRESRSSRDSRSLMTVVNSVSTFMFSVLQSGWRLCRWKSSMSTGKV
SSHTRTGSALGTPEAEMLREVYLVLWVIRKQLRELARRQERRRRRRMRSHASHTSRHSESVQGL
KHDARSPL

hide sequence

RefSeq Acc Id:

ENSRNOP00000071995 ⟸ ENSRNOT00000082910

RefSeq Acc Id:

ENSRNOP00000001869 ⟸ ENSRNOT00000001869

RefSeq Acc Id:

ENSRNOP00000079951 ⟸ ENSRNOT00000105126

RefSeq Acc Id:

ENSRNOP00000056350 ⟸ ENSRNOT00000059592

RefSeq Acc Id:

ENSRNOP00000033658 ⟸ ENSRNOT00000039280

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AY52-F1-model_v2	AlphaFold	Q6AY52	1-200	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:11442159	AgrOrtholog
Ensembl Genes	ENSRNOG00000024616	Ensembl
	ENSRNOG00000046006	Ensembl
	ENSRNOG00000050805	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001869	ENTREZGENE
	ENSRNOT00000001869.6	UniProtKB/TrEMBL
	ENSRNOT00000059592.3	UniProtKB/TrEMBL
	ENSRNOT00000082910.2	UniProtKB/TrEMBL
	ENSRNOT00000105126.1	UniProtKB/TrEMBL
Gene3D-CATH	Single helix bin	UniProtKB/TrEMBL
InterPro	DUF4703	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TSC-22_Dip_Bun	UniProtKB/TrEMBL
	TSC22/BUN_CS	UniProtKB/TrEMBL
	TSC22D4	UniProtKB/TrEMBL
KEGG Report	rno:100362783	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	Spacdr	ENTREZGENE
PANTHER	CHROMOSOME 7 OPEN READING FRAME 61	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN CBG15980	UniProtKB/TrEMBL
	PTHR39221	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR47610	UniProtKB/TrEMBL
	TSC22	UniProtKB/TrEMBL
	TSC22 DOMAIN FAMILY PROTEIN 4	UniProtKB/TrEMBL
Pfam	DUF4703	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TSC22	UniProtKB/TrEMBL
PhenoGen	Spacdr	PhenoGen
PROSITE	TSC22	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024616	RatGTEx
	ENSRNOG00000046006	RatGTEx
	ENSRNOG00000050805	RatGTEx
Superfamily-SCOP	Delta-sleep-inducing peptide immunoreactive peptide	UniProtKB/TrEMBL
UniProt	A0A0G2K1V1_RAT	UniProtKB/TrEMBL
	A0A8I5ZNP1_RAT	UniProtKB/TrEMBL
	A0A8L2QRK4_RAT	UniProtKB/TrEMBL
	A0A8L2UHH4	ENTREZGENE, UniProtKB/TrEMBL
	A6J000	ENTREZGENE, UniProtKB/TrEMBL
	CG061_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-07-29	Spacdr	sperm acrosome developmental regulator	C12H7orf61	chromosome 12 open reading frame, human C7orf61	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2021-03-09	C12H7orf61	chromosome 12 open reading frame, human C7orf61	LOC100362783	Uncharacterized protein C7orf61 homolog	Data merged from RGD:2324075	737654	PROVISIONAL
2016-08-02	C12H7orf61	chromosome 12 open reading frame, human C7orf61			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-06	LOC100362783	Uncharacterized protein C7orf61 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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