Syt1 (synaptotagmin I) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Syt1 (synaptotagmin I) Mus musculus
Analyze
Symbol: Syt1
Name: synaptotagmin I
RGD ID: 736945
MGI Page MGI
Description: Enables several functions, including calcium ion sensor activity; calcium-dependent phospholipid binding activity; and syntaxin-1 binding activity. Involved in modulation of chemical synaptic transmission; regulation of dopamine secretion; and synaptic vesicle exocytosis. Acts upstream of or within calcium ion-regulated exocytosis of neurotransmitter; spontaneous neurotransmitter secretion; and synchronous neurotransmitter secretion. Located in several cellular components, including Golgi apparatus; presynaptic membrane; and secretory vesicle. Is active in glutamatergic synapse. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; peripheral nervous system ganglion; and sensory organ. Orthologous to human SYT1 (synaptotagmin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW124717; G630098F17Rik; p65; synaptotagmin 1; synaptotagmin-1; SytI
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910108,333,511 - 108,846,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10108,333,511 - 108,846,843 (-)EnsemblGRCm39 Ensembl
GRCm3810108,497,650 - 109,010,980 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10108,497,650 - 109,010,982 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710107,935,305 - 108,447,675 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610107,902,359 - 108,414,729 (-)NCBIMGSCv36mm8
Celera10110,439,113 - 110,956,164 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1056.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acrylamide  (EXP,ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Brodifacoum  (ISO)
cadmium dichloride  (ISO)
calcidiol  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (ISO)
D-glucose  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
diallyl disulfide  (ISO)
disodium selenite  (EXP)
dorsomorphin  (ISO)
ethanol  (EXP)
fenamidone  (EXP)
fenthion  (EXP)
folic acid  (EXP,ISO)
formaldehyde  (EXP)
gentamycin  (ISO)
glucose  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
heroin  (ISO)
Indeno[1,2,3-cd]pyrene  (EXP)
inulin  (EXP)
irinotecan  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
methidathion  (EXP)
methotrexate  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
Ptaquiloside  (EXP)
sarin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Synaptotagmin IX regulates Ca2+-dependent secretion in PC12 cells. Fukuda M, etal., J Biol Chem. 2002 Feb 15;277(7):4601-4. Epub 2001 Dec 21.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Ca(2+)-dependent and -independent activities of neural and non-neural synaptotagmins. Li C, etal., Nature 1995 Jun 15;375(6532):594-9.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Two synaptotagmin genes, Syt1 and Syt4, are differentially regulated in adult brain and during postnatal development following kainic acid-induced seizures. Tocco G, etal., Brain Res Mol Brain Res 1996 Sep 1;40(2):229-39.
12. The synaptotagmins: calcium sensors for vesicular trafficking. Yoshihara M and Montana ES, Neuroscientist. 2004 Dec;10(6):566-74.
Additional References at PubMed
PMID:7553862   PMID:7601440   PMID:7749232   PMID:7954835   PMID:7961887   PMID:8058779   PMID:8168438   PMID:8626542   PMID:8653788   PMID:8738414   PMID:8747928   PMID:8816702  
PMID:8889548   PMID:9194562   PMID:9736654   PMID:9914469   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11172053   PMID:11242035   PMID:11544199   PMID:11562488   PMID:11753414  
PMID:12047557   PMID:12089155   PMID:12145198   PMID:12351718   PMID:12477932   PMID:12526776   PMID:12801916   PMID:12897243   PMID:12939392   PMID:14504267   PMID:14559220   PMID:14622145  
PMID:14681479   PMID:14715936   PMID:14726597   PMID:15033168   PMID:15066271   PMID:15071120   PMID:15082773   PMID:15123599   PMID:15145078   PMID:15197251   PMID:15226823   PMID:15240804  
PMID:15350218   PMID:15456828   PMID:15466855   PMID:15489334   PMID:15492212   PMID:15529118   PMID:15561725   PMID:15647478   PMID:15774481   PMID:15820695   PMID:15862624   PMID:15886015  
PMID:15920476   PMID:16093350   PMID:16141072   PMID:16141073   PMID:16301172   PMID:16352718   PMID:16407561   PMID:16407767   PMID:16512683   PMID:16595652   PMID:16602821   PMID:16923961  
PMID:16930531   PMID:16990140   PMID:17124501   PMID:17135417   PMID:17179206   PMID:17360631   PMID:17492637   PMID:17500595   PMID:17521570   PMID:18158333   PMID:18308932   PMID:18374609  
PMID:18468511   PMID:18622390   PMID:18703708   PMID:18832148   PMID:18953334   PMID:19234194   PMID:19412166   PMID:19451201   PMID:19666558   PMID:19716167   PMID:19805322   PMID:19926819  
PMID:20071530   PMID:20219474   PMID:20392954   PMID:20410110   PMID:20808911   PMID:20824061   PMID:20926654   PMID:21040848   PMID:21129439   PMID:21145004   PMID:21267068   PMID:21307259  
PMID:21451027   PMID:21496647   PMID:21521611   PMID:21576241   PMID:21645620   PMID:21677750   PMID:21816209   PMID:21873635   PMID:22036572   PMID:22079573   PMID:22184197   PMID:22197832  
PMID:22313732   PMID:22405208   PMID:22423098   PMID:22731840   PMID:22794259   PMID:22810233   PMID:22908222   PMID:23345244   PMID:23648184   PMID:23961995   PMID:24005294   PMID:24192035  
PMID:24267651   PMID:24501351   PMID:24657966   PMID:24658003   PMID:24687280   PMID:24744148   PMID:24952961   PMID:24973144   PMID:25242442   PMID:25349050   PMID:25374362   PMID:25673844  
PMID:25735570   PMID:26195798   PMID:26202512   PMID:26280336   PMID:26302206   PMID:26400647   PMID:26437117   PMID:26490858   PMID:26709651   PMID:26857994   PMID:27001899   PMID:27036734  
PMID:27052163   PMID:27091977   PMID:27210552   PMID:27325702   PMID:27399837   PMID:27466336   PMID:27507650   PMID:27881774   PMID:28173138   PMID:28193235   PMID:28355182   PMID:28363983  
PMID:28511701   PMID:28598330   PMID:28671696   PMID:28686803   PMID:28746398   PMID:28794184   PMID:28813412   PMID:29059194   PMID:29068313   PMID:29230057   PMID:29262337   PMID:29274147  
PMID:29382714   PMID:29403034   PMID:29445148   PMID:29518331   PMID:29536590   PMID:29539633   PMID:29754754   PMID:30562941   PMID:30811985   PMID:30973865   PMID:31172949   PMID:31235642  
PMID:31383906   PMID:31501440   PMID:31587282   PMID:31787133   PMID:32015138   PMID:32098902   PMID:32325033   PMID:32341095   PMID:32490813   PMID:32515733   PMID:32771460   PMID:32831174  
PMID:33571908   PMID:33730593   PMID:33753311   PMID:33903230   PMID:34065662   PMID:34151409   PMID:34321999   PMID:35193927   PMID:35361702   PMID:35537054   PMID:35701163   PMID:36280223  
PMID:36284453   PMID:36293380   PMID:36417873   PMID:36579890   PMID:36640316   PMID:36732068   PMID:36808153   PMID:37142655   PMID:37289842   PMID:37393619   PMID:37433762   PMID:37723322  
PMID:37738980   PMID:37964089   PMID:38321119   PMID:38355793   PMID:38402028   PMID:38647453   PMID:39043703  


Genomics

Comparative Map Data
Syt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910108,333,511 - 108,846,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10108,333,511 - 108,846,843 (-)EnsemblGRCm39 Ensembl
GRCm3810108,497,650 - 109,010,980 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10108,497,650 - 109,010,982 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710107,935,305 - 108,447,675 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610107,902,359 - 108,414,729 (-)NCBIMGSCv36mm8
Celera10110,439,113 - 110,956,164 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1056.52NCBI
SYT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381278,863,982 - 79,452,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1278,863,993 - 79,452,008 (+)EnsemblGRCh38hg38GRCh38
GRCh371279,257,762 - 79,845,788 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361278,135,414 - 78,368,974 (+)NCBINCBI36Build 36hg18NCBI36
Build 341278,113,750 - 78,347,311NCBI
Celera1278,924,230 - 79,512,467 (+)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1276,312,006 - 76,901,927 (+)NCBIHuRef
CHM1_11279,224,059 - 79,812,179 (+)NCBICHM1_1
T2T-CHM13v2.01278,842,458 - 79,430,647 (+)NCBIT2T-CHM13v2.0
Syt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8745,699,649 - 46,244,460 (-)NCBIGRCr8
mRatBN7.2743,813,204 - 44,358,020 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl743,815,785 - 44,357,803 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx745,726,193 - 46,271,079 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0747,929,286 - 48,474,187 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0747,707,065 - 48,251,959 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0750,084,063 - 50,638,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl750,084,060 - 50,638,798 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0750,097,034 - 50,289,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4747,243,375 - 47,795,496 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1747,261,066 - 47,815,950 (-)NCBI
Celera740,680,324 - 41,216,966 (-)NCBICelera
RH 3.4 Map7348.01RGD
Cytogenetic Map7q21NCBI
Syt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540517,839,884 - 18,372,566 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540517,840,012 - 18,372,156 (+)NCBIChiLan1.0ChiLan1.0
SYT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21086,913,025 - 87,501,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11286,909,416 - 87,498,045 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01276,392,955 - 76,981,800 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11279,240,646 - 79,829,923 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1279,595,704 - 79,829,923 (+)Ensemblpanpan1.1panPan2
SYT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11521,629,061 - 22,042,734 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1521,834,763 - 22,042,732 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1521,934,859 - 22,469,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01521,856,608 - 22,392,551 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1521,856,444 - 22,390,979 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11521,446,653 - 21,981,053 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01521,507,116 - 22,042,283 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01521,747,161 - 22,282,182 (+)NCBIUU_Cfam_GSD_1.0
Syt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494538,336,962 - 38,847,320 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936698377,179 - 575,802 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493669865,210 - 575,538 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5101,871,314 - 102,215,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15101,871,313 - 102,394,310 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25106,815,507 - 107,335,980 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11174,442,890 - 75,032,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1174,795,207 - 75,032,915 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037170,421,409 - 171,012,159 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475018,774,570 - 18,989,659 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475018,774,670 - 19,313,932 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Syt1
18870 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2584
Count of miRNA genes:630
Interacting mature miRNAs:792
Transcripts:ENSMUST00000064054, ENSMUST00000105276, ENSMUST00000126278, ENSMUST00000146618, ENSMUST00000147593, ENSMUST00000156979
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
26884388Skwq7_mskull length QTL 7, 10 week (mouse)10101735861113735905Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92729941111568319Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse

Markers in Region
AW124717  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810108,497,861 - 108,497,997UniSTSGRCm38
MGSCv3710107,934,917 - 107,935,053UniSTSGRCm37
Celera10110,438,725 - 110,438,861UniSTS
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS
Whitehead/MRC_RH101184.8UniSTS
RH94645  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810108,497,723 - 108,497,905UniSTSGRCm38
MGSCv3710107,934,779 - 107,934,961UniSTSGRCm37
Celera10110,438,587 - 110,438,769UniSTS
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS
Syt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS
cM Map1058.0UniSTS
RH140034  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810108,500,339 - 108,500,525UniSTSGRCm38
MGSCv3710107,937,395 - 107,937,581UniSTSGRCm37
Celera10110,441,201 - 110,441,387UniSTS
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS
D37792  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810108,500,202 - 108,500,358UniSTSGRCm38
MGSCv3710107,937,258 - 107,937,414UniSTSGRCm37
Celera10110,441,064 - 110,441,220UniSTS
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS
Whitehead_YAC10 UniSTS
RH78549  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810108,497,830 - 108,497,995UniSTSGRCm38
MGSCv3710107,934,886 - 107,935,051UniSTSGRCm37
Celera10110,438,694 - 110,438,859UniSTS
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS
UniSTS:492877  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810108,699,193 - 108,700,160UniSTSGRCm38
MGSCv3710108,136,249 - 108,137,216UniSTSGRCm37
Celera10110,644,727 - 110,645,694UniSTS
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS
Syt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Syt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
cM Map1058.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC141899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI842617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB624461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY238701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY259903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY268027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD774438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS667543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EL605393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FR827897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000064054   ⟹   ENSMUSP00000063293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10108,333,513 - 108,846,843 (-)Ensembl
GRCm38.p6 Ensembl10108,497,652 - 109,010,982 (-)Ensembl
Ensembl Acc Id: ENSMUST00000105276   ⟹   ENSMUSP00000100912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10108,333,511 - 108,846,836 (-)Ensembl
GRCm38.p6 Ensembl10108,497,650 - 109,010,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10108,735,293 - 108,844,961 (-)Ensembl
GRCm38.p6 Ensembl10108,899,432 - 109,009,100 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10108,735,076 - 108,846,823 (-)Ensembl
GRCm38.p6 Ensembl10108,899,215 - 109,010,962 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10108,463,147 - 108,472,825 (-)Ensembl
GRCm38.p6 Ensembl10108,627,286 - 108,636,964 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10108,463,203 - 108,844,972 (-)Ensembl
GRCm38.p6 Ensembl10108,627,342 - 109,009,111 (-)Ensembl
RefSeq Acc Id: NM_001252341   ⟹   NP_001239270
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,846,836 (-)NCBI
GRCm3810108,497,650 - 109,010,975 (-)NCBI
Celera10110,438,514 - 110,956,520 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252342   ⟹   NP_001239271
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,846,836 (-)NCBI
GRCm3810108,497,650 - 109,010,975 (-)NCBI
Celera10110,438,514 - 110,956,520 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358501   ⟹   NP_001345430
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,844,972 (-)NCBI
GRCm3810108,497,650 - 109,009,111 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358502   ⟹   NP_001345431
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,844,972 (-)NCBI
GRCm3810108,497,650 - 109,009,111 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358503   ⟹   NP_001345432
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,844,972 (-)NCBI
GRCm3810108,497,650 - 109,009,111 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358504   ⟹   NP_001345433
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,846,836 (-)NCBI
GRCm3810108,497,650 - 109,010,975 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358506   ⟹   NP_001345435
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,844,972 (-)NCBI
GRCm3810108,497,650 - 109,009,111 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009306   ⟹   NP_033332
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,846,836 (-)NCBI
GRCm3810108,497,650 - 109,010,975 (-)NCBI
MGSCv3710107,935,305 - 108,447,675 (-)RGD
Celera10110,438,514 - 110,956,520 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513447   ⟹   XP_006513510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,537,251 (-)NCBI
GRCm3810108,497,650 - 108,701,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513448   ⟹   XP_006513511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,546,670 (-)NCBI
GRCm3810108,497,650 - 108,710,809 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244984   ⟹   XP_030100844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,846,852 (-)NCBI
GRCm3810108,497,650 - 109,010,980 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244985   ⟹   XP_030100845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,844,946 (-)NCBI
GRCm3810108,497,650 - 109,009,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244986   ⟹   XP_030100846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910108,333,511 - 108,844,946 (-)NCBI
GRCm3810108,497,650 - 109,009,088 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033332   ⟸   NM_009306
- Peptide Label: isoform 1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239271   ⟸   NM_001252342
- Peptide Label: isoform 2
- UniProtKB: Q3TPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239270   ⟸   NM_001252341
- Peptide Label: isoform 1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513511   ⟸   XM_006513448
- Peptide Label: isoform X1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513510   ⟸   XM_006513447
- Peptide Label: isoform X1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030100844   ⟸   XM_030244984
- Peptide Label: isoform X1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345433   ⟸   NM_001358504
- Peptide Label: isoform 2
- UniProtKB: Q3TPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345430   ⟸   NM_001358501
- Peptide Label: isoform 2
- UniProtKB: Q3TPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345432   ⟸   NM_001358503
- Peptide Label: isoform 1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345435   ⟸   NM_001358506
- Peptide Label: isoform 2
- UniProtKB: Q3TPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345431   ⟸   NM_001358502
- Peptide Label: isoform 1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030100845   ⟸   XM_030244985
- Peptide Label: isoform X1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030100846   ⟸   XM_030244986
- Peptide Label: isoform X1
- UniProtKB: P46096 (UniProtKB/Swiss-Prot),   H6RXZ1 (UniProtKB/TrEMBL),   Q3TPT3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000100912   ⟸   ENSMUST00000105276
Ensembl Acc Id: ENSMUSP00000063293   ⟸   ENSMUST00000064054
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P46096-F1-model_v2 AlphaFold P46096 1-421 view protein structure

Promoters
RGD ID:6818813
Promoter ID:MM_KWN:5578
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:AK148661_5330428N10RIK,   OTTMUST00000039009
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610108,073,361 - 108,073,861 (-)MPROMDB
RGD ID:6819989
Promoter ID:MM_KWN:5586
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000105276,   OTTMUST00000039007,   OTTMUST00000047565,   UC007GZI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610108,447,801 - 108,448,301 (-)MPROMDB
RGD ID:8673224
Promoter ID:EPDNEW_M14643
Type:initiation region
Name:Syt1_1
Description:Mus musculus synaptotagmin I , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810109,010,946 - 109,011,006EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99667 AgrOrtholog
Ensembl Genes ENSMUSG00000035864 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000064054 ENTREZGENE
  ENSMUST00000064054.14 UniProtKB/Swiss-Prot
  ENSMUST00000105276 ENTREZGENE
  ENSMUST00000105276.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20979 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99667 ENTREZGENE
NCBI Gene 20979 ENTREZGENE
PANTHER PTHR10024:SF239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOTAGMIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syt1 PhenoGen
PRINTS C2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt H6RXZ1 ENTREZGENE, UniProtKB/TrEMBL
  P46096 ENTREZGENE
  Q3TPT3 ENTREZGENE, UniProtKB/TrEMBL
  SYT1_MOUSE UniProtKB/Swiss-Prot