Gcgr (glucagon receptor) - Rat Genome Database

Name: Gcgr
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gcgr (glucagon receptor) Rattus norvegicus

Analyze

Symbol:

Gcgr

Name:

glucagon receptor

RGD ID:

2669

Description:

Enables glucagon receptor activity and peptide hormone binding activity. Involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; exocytosis; and hormone-mediated signaling pathway. Located in endosome. Human ortholog(s) of this gene implicated in Mahvash Disease and type 2 diabetes mellitus. Orthologous to human GCGR (glucagon receptor); PARTICIPATES IN G protein mediated signaling pathway via Galphas family; glucagon signaling pathway; INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GL-R; glucagon receptor perhaps same as Niddm3; MGC93090

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GCGR (glucagon receptor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gcgr (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gcgr (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GCGR (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GCGR (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gcgr (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GCGR (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GCGR (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gcgr (glucagon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GIPR (gastric inhibitory polypeptide receptor)	HGNC	OrthoDB
Homo sapiens (human):	GLP1R (glucagon like peptide 1 receptor)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	GCGR (glucagon receptor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gcgr (glucagon receptor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gcgra (glucagon receptor a)	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gcgrb (glucagon receptor b)	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gcgr	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	105,808,474 - 105,816,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	105,808,473 - 105,816,640 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	110,912,618 - 110,920,789 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,375,645 - 110,383,816 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,728,922 - 105,737,089 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,707,863 - 109,716,253 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,707,962 - 109,716,128 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,301,000 - 109,309,259 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	109,921,411 - 109,929,577 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	109,935,913 - 109,944,081 (+)	NCBI
Celera	10	104,352,017 - 104,360,184 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

ACTH-independent macronodular adrenal hyperplasia 1 (ISO)

genetic disease (ISO)

Mahvash disease (ISO,ISS)

maturity-onset diabetes of the young type 1 (ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1,3,5-trinitro-1,3,5-triazinane (EXP)

1-naphthyl isothiocyanate (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-acetamidofluorene (EXP)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

ammonium chloride (EXP)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (ISO)

bexarotene (EXP)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

buta-1,3-diene (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (EXP)

chlorpromazine (ISO)

chrysene (ISO)

copper atom (ISO)

copper(0) (ISO)

dibutyl phthalate (EXP)

dichlorine (EXP)

disulfiram (ISO)

endosulfan (EXP)

fenthion (ISO)

gatifloxacin (EXP)

genistein (EXP)

gentamycin (EXP)

glucagon (ISO)

graphite (EXP)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methapyrilene (ISO)

methidathion (ISO)

methimazole (EXP)

methoxychlor (EXP)

N-methyl-4-phenylpyridinium (EXP)

N-methyl-N'-nitro-N-nitrosoguanidine (EXP)

N-nitrosodiethylamine (EXP)

naphthalene (ISO)

O-methyleugenol (ISO)

ozone (EXP)

paracetamol (ISO)

paraquat (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenacetin (EXP)

phenylhydrazine (EXP)

pirinixic acid (EXP)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

propanal (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

Tesaglitazar (EXP)

tetrachloromethane (ISO)

tetraphene (ISO)

thioacetamide (EXP)

tributylstannane (ISO)

triptonide (ISO)

troglitazone (EXP)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (IBA,IDA,ISO,TAS)

adenylate cyclase-modulating G protein-coupled receptor signaling pathway (IMP,ISO)

cell surface receptor signaling pathway (IEA)

cellular response to glucagon stimulus (IEA,ISO)

cellular response to starvation (ISO)

exocytosis (IDA)

G protein-coupled receptor signaling pathway (IDA,IEA,IMP)

glucose homeostasis (ISO,ISS)

hormone-mediated signaling pathway (IDA,IMP)

positive regulation of gene expression (ISO)

regulation of glycogen metabolic process (ISO,ISS)

response to starvation (ISO,ISS)

Cellular Component

endosome (IDA)

membrane (IEA)

plasma membrane (IBA,ISO,ISS)

Molecular Function

glucagon receptor activity (IBA,IDA,IEA,IMP,ISO)

peptide hormone binding (IBA,IDA,IMP)

Molecular Pathway Annotations Click to see Annotation Detail View

G protein mediated signaling pathway via Galphas family (IDA)

glucagon signaling pathway (IDA,IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Alterations in hepatic glucagon receptor density and in Gsalpha and Gialpha2 protein content with diet-induced hepatic steatosis: effects of acute exercise.	Charbonneau A, etal., Am J Physiol Endocrinol Metab. 2005 Jul;289(1):E8-14. Epub 2005 Feb 1.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Structural and functional characterizations of the 5'-flanking region of the mouse glucagon receptor gene: comparison with the rat gene.	Geiger A, etal., Biochem Biophys Res Commun 2000 Jun 16;272(3):912-21.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	A missense mutation in the glucagon receptor gene is associated with non-insulin-dependent diabetes mellitus.	Hager J, etal., Nat Genet. 1995 Mar;9(3):299-304.
6.	Expression cloning and signaling properties of the rat glucagon receptor.	Jelinek LJ, etal., Science 1993 Mar 12;259(5101):1614-6.
7.	Glucagon stimulates exocytosis in mouse and rat pancreatic alpha-cells by binding to glucagon receptors.	Ma X, etal., Mol Endocrinol. 2005 Jan;19(1):198-212. Epub 2004 Sep 30.
8.	Glucagon-mediated internalization of serine-phosphorylated glucagon receptor and Gsalpha in rat liver.	Merlen C, etal., FEBS Lett. 2006 Oct 16;580(24):5697-704. Epub 2006 Sep 20.
9.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
10.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
11.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
12.	Online Mendelian Inheritance in Man, OMIM (TM).	Online Mendelian Inheritance in Man, OMIM (TM).
13.	Functional analysis of the glucose response element of the rat glucagon receptor gene in insulin-producing INS-1 cells.	Portois L, etal., Biochim Biophys Acta 2002 Mar 19;1574(2):175-86.
14.	Identification of a glucose response element in the promoter of the rat glucagon receptor gene.	Portois L, etal., J Biol Chem 1999 Mar 19;274(12):8181-90.
15.	GOA pipeline	RGD automated data pipeline
16.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
18.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
19.	A cDNA construct allowing the expression of rat hepatic glucagon receptors.	Svoboda M, etal., Biochem Biophys Res Commun 1993 Apr 15;192(1):135-42.
20.	Small introns in a hepatic cDNA encoding a new glucagon-like peptide 1-type receptor.	Svoboda M, etal., Biochem Biophys Res Commun 1993 Mar 15;191(2):479-86.
21.	Localization of the rat genes encoding glucagon, glucagon receptor, and insulin receptor, candidates for diabetes mellitus susceptibility loci.	Szpirer C, etal., Mamm Genome 1997 Aug;8(8):586-8
22.	Roles of specific extracellular domains of the glucagon receptor in ligand binding and signaling.	Unson CG, etal., Biochemistry 2002 Oct 1;41(39):11795-803.
23.	Antibodies against specific extracellular epitopes of the glucagon receptor block glucagon binding.	Unson CG, etal., Proc Natl Acad Sci U S A. 1996 Jan 9;93(1):310-5.

Additional References at PubMed

PMID:8082779	PMID:9287038	PMID:11853547	PMID:12552113	PMID:17053032	PMID:17462598	PMID:18787074	PMID:19046568	PMID:23209793	PMID:23918690	PMID:26975347	PMID:28514451

Genomics

Comparative Map Data

Gcgr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	105,808,474 - 105,816,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	105,808,473 - 105,816,640 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	110,912,618 - 110,920,789 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,375,645 - 110,383,816 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,728,922 - 105,737,089 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,707,863 - 109,716,253 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,707,962 - 109,716,128 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,301,000 - 109,309,259 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	109,921,411 - 109,929,577 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	109,935,913 - 109,944,081 (+)	NCBI
Celera	10	104,352,017 - 104,360,184 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

GCGR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	81,804,150 - 81,814,008 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	81,804,132 - 81,814,008 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	79,762,026 - 79,771,884 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 34	17	1,860,193 - 1,870,113	NCBI
Celera	17	76,365,499 - 76,375,377 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,168,495 - 75,173,668 (+)	NCBI		HuRef
CHM1_1	17	79,848,214 - 79,858,084 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	82,671,316 - 82,681,173 (+)	NCBI		T2T-CHM13v2.0

Gcgr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	120,420,011 - 120,429,815 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	120,421,525 - 120,429,812 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	120,529,185 - 120,538,989 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	120,530,699 - 120,538,986 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	120,392,041 - 120,400,298 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	120,345,362 - 120,355,178 (+)	NCBI		MGSCv36	mm8
Celera	11	132,266,137 - 132,274,394 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	84.24	NCBI

Gcgr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	1,340,689 - 1,344,260 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	1,340,410 - 1,348,028 (-)	NCBI	ChiLan1.0	ChiLan1.0

GCGR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	17	103,240,205 - 103,250,716 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,205,023 - 76,220,171 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	81,911,915 - 81,922,906 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	81,912,135 - 81,922,906 (+)	Ensembl	panpan1.1		panPan2

GCGR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	455,744 - 463,070 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	344,438 - 459,925 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	1,057,897 - 1,065,209 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	1,048,891 - 1,056,220 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	1,074,261 - 1,081,570 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	1,200,838 - 1,208,113 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	1,279,553 - 1,286,873 (-)	NCBI		UU_Cfam_GSD_1.0

Gcgr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	1,060,107 - 1,068,224 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	5,343,740 - 5,351,923 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936594	5,347,789 - 5,351,852 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GCGR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	1,146,069 - 1,157,234 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	1,149,589 - 1,157,234 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GCGR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	73,672,490 - 73,693,297 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	73,681,571 - 73,693,299 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	45,089,536 - 45,141,103 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gcgr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	10,678,944 - 10,682,362 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	10,674,854 - 10,682,619 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gcgr
26 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	51
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000054962
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
1558652	Bw57	Body weight QTL 57	4.2	0.0008	body mass (VT:0001259)	body weight (CMO:0000012)	10	90910316	107211142	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	96703043	107057807	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	96703043	107057807	Rat

Markers in Region

D10Mcw1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	105,813,290 - 105,813,458 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	109,712,779 - 109,712,946	NCBI	Rnor6.0
Rnor_5.0	10	109,305,909 - 109,306,076	UniSTS	Rnor5.0
RGSC_v3.4	10	109,926,227 - 109,926,395	RGD	RGSC3.4
RGSC_v3.4	10	109,926,228 - 109,926,395	UniSTS	RGSC3.4
RGSC_v3.1	10	109,940,731 - 109,940,899	RGD
Celera	10	104,356,834 - 104,357,001	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

RH142644

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	105,807,925 - 105,808,092 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	109,707,414 - 109,707,580	NCBI	Rnor6.0
Rnor_5.0	10	109,300,544 - 109,300,710	UniSTS	Rnor5.0
RGSC_v3.4	10	109,920,896 - 109,921,062	UniSTS	RGSC3.4
Celera	10	104,351,294 - 104,351,460	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

RH142648

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	105,807,953 - 105,808,117 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	109,707,442 - 109,707,605	NCBI	Rnor6.0
Rnor_5.0	10	109,300,572 - 109,300,735	UniSTS	Rnor5.0
RGSC_v3.4	10	109,920,924 - 109,921,087	UniSTS	RGSC3.4
Celera	10	104,351,322 - 104,351,485	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

RH141343

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	105,816,456 - 105,816,636 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	109,715,945 - 109,716,124	NCBI	Rnor6.0
Rnor_5.0	10	109,309,075 - 109,309,254	UniSTS	Rnor5.0
RGSC_v3.4	10	109,929,394 - 109,929,573	UniSTS	RGSC3.4
Celera	10	104,360,000 - 104,360,179	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

Gcgr

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	105,815,396 - 105,816,285 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	109,714,885 - 109,715,773	NCBI	Rnor6.0
Rnor_5.0	10	109,308,015 - 109,308,903	UniSTS	Rnor5.0
RGSC_v3.4	10	109,928,334 - 109,929,222	UniSTS	RGSC3.4
Celera	10	104,358,940 - 104,359,828	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		7	37	35	6	35				16
Low	3	18	20	6	13	6	7	9	11	13	30	11	7
Below cutoff		18					1	2	45	6	11		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_172091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_172092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_073147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF229080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH003671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB735411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV117246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L04796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M96674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X68692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000054962 ⟹ ENSRNOP00000051845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	105,808,473 - 105,816,640 (+)	Ensembl
Rnor_6.0 Ensembl	10	109,707,962 - 109,716,128 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083601 ⟹ ENSRNOP00000074929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	109,708,755 - 109,716,128 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088898 ⟹ ENSRNOP00000074632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	105,808,510 - 105,816,640 (+)	Ensembl
Rnor_6.0 Ensembl	10	109,707,998 - 109,716,128 (+)	Ensembl

RefSeq Acc Id:

NM_172091 ⟹ NP_742088

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,809,267 - 105,816,641 (+)	NCBI
Rnor_6.0	10	109,708,755 - 109,716,129 (+)	NCBI
Rnor_5.0	10	109,301,000 - 109,309,259 (+)	NCBI
RGSC_v3.4	10	109,921,411 - 109,929,577 (+)	RGD
Celera	10	104,352,810 - 104,360,184 (+)	NCBI

Sequence:

show sequence

TGCTGTTCTTCTGTCTTGGAGACATAGAAGGGGGACTCTGAGCTCACCGGAGTCGCCTGAGGAG
AGGTGCACACACCCCCAAGGACCCAGGCACCCAACCTCTGCCAGATGTGGGGGGGTGGCTACCC
AGAGGCATGCTCCTCACCCAGCTCCACTGTCCCTACCTGCTGCTGCTGCTGGTGGTGCTGTCAT
GTCTGCCAAAGGCACCCTCTGCCCAGGTAATGGACTTTTTGTTTGAGAAGTGGAAGCTCTATAG
TGACCAGTGCCACCACAACCTAAGCCTGCTGCCCCCACCTACTGAGCTGGTCTGCAACAGAACT
TTCGACAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTCCTGCCCCT
GGTACCTACCTTGGTACCACAAAGTGCAGCACCGCCTAGTGTTCAAGAGGTGTGGGCCTGATGG
GCAGTGGGTTCGAGGGCCACGGGGGCAGTCATGGCGCGACGCCTCCCAATGTCAGATGGATGAT
GACGAGATCGAGGTCCAGAAGGGGGTAGCCAAGATGTATAGCAGCTACCAGGTGATGTACACTG
TGGGCTACAGTCTGTCCCTGGGGGCCTTGCTCCTGGCGCTGGTCATCCTGCTGGGCCTCAGGAA
GCTGCACTGCACCCGGAACTACATCCACGGGAACCTGTTCGCGTCCTTCGTGCTCAAGGCTGGC
TCTGTGCTGGTCATTGATTGGCTGCTCAAGACACGCTATAGCCAGAAGATTGGAGATGACCTCA
GTGTGAGCGTCTGGCTCAGTGATGGGGCGGTGGCTGGCTGCAGAGTGGCCACAGTGATCATGCA
GTACGGCATCATAGCCAACTACTGCTGGTTGCTGGTGGAGGGTGTGTACCTGTACAGCCTGCTG
AGCATCACCACCTTCTCGGAGAAGAGCTTCTTCTCCCTCTATCTGTGCATCGGCTGGGGATCTC
CCCTGCTGTTTGTCATCCCCTGGGTGGTGGTCAAGTGTCTGTTTGAGAATGTCCAGTGCTGGAC
CAGCAATGACAATATGGGATTCTGGTGGATCCTGCGTATCCCTGTACTCCTGGCCATACTGATC
AATTTTTTCATCTTTGTCCGCATCATTCATCTTCTTGTGGCCAAGCTGCGTGCCCATCAGATGC
ACTATGCTGATTACAAGTTCCGGCTAGCCAGGTCCACGCTGACCCTCATTCCTCTGCTGGGAGT
CCACGAAGTGGTCTTTGCCTTTGTGACTGATGAGCATGCCCAGGGCACCCTGCGCTCCACCAAG
CTCTTTTTTGACCTGTTCTTCAGCTCCTTCCAGGGTCTGCTGGTGGCTGTTCTCTACTGTTTCC
TCAACAAGGAGGTGCAGGCAGAGCTACTGCGGCGTTGGAGGCGATGGCAAGAAGGCAAAGCTCT
TCAGGAGGAAAGGATGGCCAGCAGCCATGGCAGCCACATGGCCCCAGCAGGGACTTGTCATGGT
GATCCCTGTGAGAAACTTCAGCTTATGAGTGCAGGCAGCAGCAGTGGGACTGGCTGTGAGCCCT
CTGCGAAGACCTCATTGGCCAGTAGTCTCCCAAGGCTGGCTGACAGCCCCACCTGAATCTCCAC
TGGACTCCAGCCAAGTTGGATTCAGAAAGGGCCTCACAAGACAACCCAGAAACAGATGCCTGGC
CAAGGCTGAAGAGGCAAAGCAGCAAGACAGCAGCTTGTACTATCCACACTCCCCTAACCTGTCC
TGGCCGGGTACAGGCCACATTGATGGAGTAGGGGCTGGATATGATGGAGTAGCCATGCTATGAA
CTATGGGTGTTCCCATGAGTGTTGCCATGTTCCATGCACACAGATATGACCTTCAGTAAAGAGC
TCCCGTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_172092 ⟹ NP_742089

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,808,474 - 105,816,641 (+)	NCBI
Rnor_6.0	10	109,707,962 - 109,716,129 (+)	NCBI
Rnor_5.0	10	109,301,000 - 109,309,259 (+)	NCBI
RGSC_v3.4	10	109,921,411 - 109,929,577 (+)	RGD
Celera	10	104,352,017 - 104,360,184 (+)	NCBI

Sequence:

show sequence

CCGCCGGCGCCCAGATCCCAGTGCGCTCGAGGACCGCGAGGAGCCCAGTCCTAGACCCAGCAAC
CTGAGGAGAGGTGCACACACCCCCAAGGACCCAGGCACCCAACCTCTGCCAGATGTGGGGGGGT
GGCTACCCAGAGGCATGCTCCTCACCCAGCTCCACTGTCCCTACCTGCTGCTGCTGCTGGTGGT
GCTGTCATGTCTGCCAAAGGCACCCTCTGCCCAGGTAATGGACTTTTTGTTTGAGAAGTGGAAG
CTCTATAGTGACCAGTGCCACCACAACCTAAGCCTGCTGCCCCCACCTACTGAGCTGGTCTGCA
ACAGAACTTTCGACAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTC
CTGCCCCTGGTACCTACCTTGGTACCACAAAGTGCAGCACCGCCTAGTGTTCAAGAGGTGTGGG
CCTGATGGGCAGTGGGTTCGAGGGCCACGGGGGCAGTCATGGCGCGACGCCTCCCAATGTCAGA
TGGATGATGACGAGATCGAGGTCCAGAAGGGGGTAGCCAAGATGTATAGCAGCTACCAGGTGAT
GTACACTGTGGGCTACAGTCTGTCCCTGGGGGCCTTGCTCCTGGCGCTGGTCATCCTGCTGGGC
CTCAGGAAGCTGCACTGCACCCGGAACTACATCCACGGGAACCTGTTCGCGTCCTTCGTGCTCA
AGGCTGGCTCTGTGCTGGTCATTGATTGGCTGCTCAAGACACGCTATAGCCAGAAGATTGGAGA
TGACCTCAGTGTGAGCGTCTGGCTCAGTGATGGGGCGGTGGCTGGCTGCAGAGTGGCCACAGTG
ATCATGCAGTACGGCATCATAGCCAACTACTGCTGGTTGCTGGTGGAGGGTGTGTACCTGTACA
GCCTGCTGAGCATCACCACCTTCTCGGAGAAGAGCTTCTTCTCCCTCTATCTGTGCATCGGCTG
GGGATCTCCCCTGCTGTTTGTCATCCCCTGGGTGGTGGTCAAGTGTCTGTTTGAGAATGTCCAG
TGCTGGACCAGCAATGACAATATGGGATTCTGGTGGATCCTGCGTATCCCTGTACTCCTGGCCA
TACTGATCAATTTTTTCATCTTTGTCCGCATCATTCATCTTCTTGTGGCCAAGCTGCGTGCCCA
TCAGATGCACTATGCTGATTACAAGTTCCGGCTAGCCAGGTCCACGCTGACCCTCATTCCTCTG
CTGGGAGTCCACGAAGTGGTCTTTGCCTTTGTGACTGATGAGCATGCCCAGGGCACCCTGCGCT
CCACCAAGCTCTTTTTTGACCTGTTCTTCAGCTCCTTCCAGGGTCTGCTGGTGGCTGTTCTCTA
CTGTTTCCTCAACAAGGAGGTGCAGGCAGAGCTACTGCGGCGTTGGAGGCGATGGCAAGAAGGC
AAAGCTCTTCAGGAGGAAAGGATGGCCAGCAGCCATGGCAGCCACATGGCCCCAGCAGGGACTT
GTCATGGTGATCCCTGTGAGAAACTTCAGCTTATGAGTGCAGGCAGCAGCAGTGGGACTGGCTG
TGAGCCCTCTGCGAAGACCTCATTGGCCAGTAGTCTCCCAAGGCTGGCTGACAGCCCCACCTGA
ATCTCCACTGGACTCCAGCCAAGTTGGATTCAGAAAGGGCCTCACAAGACAACCCAGAAACAGA
TGCCTGGCCAAGGCTGAAGAGGCAAAGCAGCAAGACAGCAGCTTGTACTATCCACACTCCCCTA
ACCTGTCCTGGCCGGGTACAGGCCACATTGATGGAGTAGGGGCTGGATATGATGGAGTAGCCAT
GCTATGAACTATGGGTGTTCCCATGAGTGTTGCCATGTTCCATGCACACAGATATGACCTTCAG
TAAAGAGCTCCCGTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_073147

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,808,474 - 105,816,641 (+)	NCBI
Rnor_6.0	10	109,707,962 - 109,716,129 (+)	NCBI
Rnor_5.0	10	109,301,000 - 109,309,259 (+)	NCBI
Celera	10	104,352,017 - 104,360,184 (+)	NCBI

Sequence:

show sequence

CCGCCGGCGCCCAGATCCCAGTGCGCTCGAGGACCGCGAGGAGCCCAGTCCTAGACCCAGCAAC
CTGAGGAGAGGTGCACACACCCCCAAGGACCCAGGCACCCAACCTCTGCCAGATGTGGGGGGGT
GGCTACCCAGAGGCATGCTCCTCACCCAGCTCCACTGTCCCTACCTGCTGCTGCTGCTGGTGGT
GCTGTCATGTCTGCCAAAGGCACCCTCTGCCCAGGTAATGGACTTTTTGTTTGAGAAGTGGAAG
CTCTATAGTGACCAGTGCCACCACAACCTAAGCCTGCTGCCCCCACCTACTGAGCTGGTCTGCA
ACAGAACTTTCGACAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTC
CTGCCCCTGGTACCTACCTTGGTACCACAAAGTGCAGCACCGCCTAGTGTTCAAGAGGTGTGGG
CCTGATGGGCAGTGGGTTCGAGGGCCACGGGGGCAGTCATGGCGCGACGCCTCCCAATGTCAGA
TGGATGATGACGAGATCGAGGTCCAGGAAGCTGCACTGCACCCGGAACTACATCCACGGGAACC
TGTTCGCGTCCTTCGTGCTCAAGGCTGGCTCTGTGCTGGTCATTGATTGGCTGCTCAAGACACG
CTATAGCCAGAAGATTGGAGATGACCTCAGTGTGAGCGTCTGGCTCAGTGATGGGGCGGTGGCT
GGCTGCAGAGTGGCCACAGTGATCATGCAGTACGGCATCATAGCCAACTACTGCTGGTTGCTGG
TGGAGGGTGTGTACCTGTACAGCCTGCTGAGCATCACCACCTTCTCGGAGAAGAGCTTCTTCTC
CCTCTATCTGTGCATCGGCTGGGGATCTCCCCTGCTGTTTGTCATCCCCTGGGTGGTGGTCAAG
TGTCTGTTTGAGAATGTCCAGTGCTGGACCAGCAATGACAATATGGGATTCTGGTGGATCCTGC
GTATCCCTGTACTCCTGGCCATACTGATCAATTTTTTCATCTTTGTCCGCATCATTCATCTTCT
TGTGGCCAAGCTGCGTGCCCATCAGATGCACTATGCTGATTACAAGTTCCGGCTAGCCAGGTCC
ACGCTGACCCTCATTCCTCTGCTGGGAGTCCACGAAGTGGTCTTTGCCTTTGTGACTGATGAGC
ATGCCCAGGGCACCCTGCGCTCCACCAAGCTCTTTTTTGACCTGTTCTTCAGCTCCTTCCAGGG
TCTGCTGGTGGCTGTTCTCTACTGTTTCCTCAACAAGGAGGTGCAGGCAGAGCTACTGCGGCGT
TGGAGGCGATGGCAAGAAGGCAAAGCTCTTCAGGAGGAAAGGATGGCCAGCAGCCATGGCAGCC
ACATGGCCCCAGCAGGGACTTGTCATGGTGATCCCTGTGAGAAACTTCAGCTTATGAGTGCAGG
CAGCAGCAGTGGGACTGGCTGTGAGCCCTCTGCGAAGACCTCATTGGCCAGTAGTCTCCCAAGG
CTGGCTGACAGCCCCACCTGAATCTCCACTGGACTCCAGCCAAGTTGGATTCAGAAAGGGCCTC
ACAAGACAACCCAGAAACAGATGCCTGGCCAAGGCTGAAGAGGCAAAGCAGCAAGACAGCAGCT
TGTACTATCCACACTCCCCTAACCTGTCCTGGCCGGGTACAGGCCACATTGATGGAGTAGGGGC
TGGATATGATGGAGTAGCCATGCTATGAACTATGGGTGTTCCCATGAGTGTTGCCATGTTCCAT
GCACACAGATATGACCTTCAGTAAAGAGCTCCCGTAGGAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_006247877 ⟹ XP_006247939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,812,419 - 105,816,641 (+)	NCBI
Rnor_6.0	10	109,708,719 - 109,716,129 (+)	NCBI
Rnor_5.0	10	109,301,000 - 109,309,259 (+)	NCBI

Sequence:

show sequence

GTTCTCGCATCCTCCGAGGATCGGCCAGGGATATTTTGCTGTTCTTCTGTCTTGGAGACATAGA
AGGGGGACTCTGAGCTCACCGGAGTCGCCTGAGGAGAGGTGCACACACCCCCAAGGACCCAGGC
ACCCAACCTCTGCCAGATGTGGGGGGGTGGCTACCCAGAGGCATGCTCCTCACCCAGCTCCACT
GTCCCTACCTGCTGCTGCTGCTGGTGGTGCTGTCATGTCTGAGCTGGTCTGCAACAGAACTTTC
GACAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTCCTGCCCCTGGT
ACCTACCTTGGTACCACAAAGCACCGCCTAGTGTTCAAGAGGTGTGGGCCTGATGGGCAGTGGG
TTCGAGGGCCACGGGGGCAGTCATGGCGCGACGCCTCCCAATGTCAGATGGATGATGACGAGAT
CGAGGTCCAGAAGGGGGTAGCCAAGATGTATAGCAGCTACCAGGTGATGTACACTGTGGGCTAC
AGTCTGTCCCTGGGGGCCTTGCTCCTGGCGCTGGTCATCCTGCTGGGCCTCAGGAAGCTGCACT
GCACCCGGAACTACATCCACGGGAACCTGTTCGCGTCCTTCGTGCTCAAGGCTGGCTCTGTGCT
GGTCATTGATTGGCTGCTCAAGACACGCTATAGCCAGAAGATTGGAGATGACCTCAGTGTGAGC
GTCTGGCTCAGTGATGGGGCGGTGGCTGGCTGCAGAGTGGCCACAGTGATCATGCAGTACGGCA
TCATAGCCAACTACTGCTGGTTGCTGGTGGAGGGTGTGTACCTGTACAGCCTGCTGAGCATCAC
CACCTTCTCGGAGAAGAGCTTCTTCTCCCTCTATCTGTGCATCGGCTGGGGATCTCCCCTGCTG
TTTGTCATCCCCTGGGTGGTGGTCAAGTGTCTGTTTGAGAATGTCCAGTGCTGGACCAGCAATG
ACAATATGGGATTCTGGTGGATCCTGCGTATCCCTGTACTCCTGGCCATACTGATCAATTTTTT
CATCTTTGTCCGCATCATTCATCTTCTTGTGGCCAAGCTGCGTGCCCATCAGATGCACTATGCT
GATTACAAGTTCCGGCTAGCCAGGTCCACGCTGACCCTCATTCCTCTGCTGGGAGTCCACGAAG
TGGTCTTTGCCTTTGTGACTGATGAGCATGCCCAGGGCACCCTGCGCTCCACCAAGCTCTTTTT
TGACCTGTTCTTCAGCTCCTTCCAGGGTCTGCTGGTGGCTGTTCTCTACTGTTTCCTCAACAAG
GAGGTGCAGGCAGAGCTACTGCGGCGTTGGAGGCGATGGCAAGAAGGCAAAGCTCTTCAGGAGG
AAAGGATGGCCAGCAGCCATGGCAGCCACATGGCCCCAGCAGGGACTTGTCATGGTGATCCCTG
TGAGAAACTTCAGCTTATGAGTGCAGGCAGCAGCAGTGGGACTGGCTGTGAGCCCTCTGCGAAG
ACCTCATTGGCCAGTAGTCTCCCAAGGCTGGCTGACAGCCCCACCTGAATCTCCACTGGACTCC
AGCCAAGTTGGATTCAGAAAGGGCCTCACAAGACAACCCAGAAACAGATGCCTGGCCAAGGCTG
AAGAGGCAAAGCAGCAAGACAGCAGCTTGTACTATCCACACTCCCCTAACCTGTCCTGGCCGGG
TACAGGCCACATTGATGGAGTAGGGGCTGGATATGATGGAGTAGCCATGCTATGAACTATGGGT
GTTCCCATGAGTGTTGCCATGTTCCATGCACACAGATATGACCTTCAGTAAAGAGCTCCCGTAG
GA

hide sequence

RefSeq Acc Id:

XM_008768468 ⟹ XP_008766690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,811,849 - 105,816,641 (+)	NCBI
Rnor_6.0	10	109,711,347 - 109,716,253 (+)	NCBI

Sequence:

show sequence

GGAACTGAGAGTTCCACCTCTTGTTCCAAAGGTAGCTAGGAGAAGGTAGCTGATGTTCATGGTT
TCTGCTGCCCAGGATTTGTCACTGGCGATCCCACATCTTACAGAAAACATCAGGCAGAGGTGTC
CCTCATCTGGGCCCTGGCTAGAAACTGCCCTGGAATGAGGACGAGTGGCCATGGACCTGGGCAC
TGGACCCTCGCTCTCTTTATCTGAGCCTGAGGAGAGGTGCACACACCCCCAAGGACCCAGGCAC
CCAACCTCTGCCAGATGTGGGGGGGTGGCTACCCAGAGGCATGCTCCTCACCCAGCTCCACTGT
CCCTACCTGCTGCTGCTGCTGGTGGTGCTGTCATGTCTGAGCTGGTCTGCAACAGAACTTTCGA
CAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTCCTGCCCCTGGTAC
CTACCTTGGTACCACAAAGTGCAGCACCGCCTAGTGTTCAAGAGGTGTGGGCCTGATGGGCAGT
GGGTTCGAGGGCCACGGGGGCAGTCATGGCGCGACGCCTCCCAATGTCAGATGGATGATGACGA
GATCGAGGTCCAGAAGGGGGTAGCCAAGATGTATAGCAGCTACCAGGTGATGTACACTGTGGGC
TACAGTCTGTCCCTGGGGGCCTTGCTCCTGGCGCTGGTCATCCTGCTGGGCCTCAGGAAGCTGC
ACTGCACCCGGAACTACATCCACGGGAACCTGTTCGCGTCCTTCGTGCTCAAGGCTGGCTCTGT
GCTGGTCATTGATTGGCTGCTCAAGACACGCTATAGCCAGAAGATTGGAGATGACCTCAGTGTG
AGCGTCTGGCTCAGTGATGGGGCGGTGGCTGGCTGCAGAGTGGCCACAGTGATCATGCAGTACG
GCATCATAGCCAACTACTGCTGGTTGCTGGTGGAGGGTGTGTACCTGTACAGCCTGCTGAGCAT
CACCACCTTCTCGGAGAAGAGCTTCTTCTCCCTCTATCTGTGCATCGGCTGGGGATCTCCCCTG
CTGTTTGTCATCCCCTGGGTGGTGGTCAAGTGTCTGTTTGAGAATGTCCAGTGCTGGACCAGCA
ATGACAATATGGGATTCTGGTGGATCCTGCGTATCCCTGTACTCCTGGCCATACTGATCAATTT
TTTCATCTTTGTCCGCATCATTCATCTTCTTGTGGCCAAGCTGCGTGCCCATCAGATGCACTAT
GCTGATTACAAGTTCCGGCTAGCCAGGTCCACGCTGACCCTCATTCCTCTGCTGGGAGTCCACG
AAGTGGTCTTTGCCTTTGTGACTGATGAGCATGCCCAGGGCACCCTGCGCTCCACCAAGCTCTT
TTTTGACCTGTTCTTCAGCTCCTTCCAGGGTCTGCTGGTGGCTGTTCTCTACTGTTTCCTCAAC
AAGGAGGTGCAGGCAGAGCTACTGCGGCGTTGGAGGCGATGGCAAGAAGGCAAAGCTCTTCAGG
AGGAAAGGATGGCCAGCAGCCATGGCAGCCACATGGCCCCAGCAGGGACTTGTCATGGTGATCC
CTGTGAGAAACTTCAGCTTATGAGTGCAGGCAGCAGCAGTGGGACTGGCTGTGAGCCCTCTGCG
AAGACCTCATTGGCCAGTAGTCTCCCAAGGCTGGCTGACAGCCCCACCTGAATCTCCACTGGAC
TCCAGCCAAGTTGGATTCAGAAAGGGCCTCACAAGACAACCCAGAAACAGATGCCTGGCCAAGG
CTGAAGAGGCAAAGCAGCAAGACAGCAGCTTGTACTATCCACACTCCCCTAACCTGTCCTGGCC
GGGTACAGGCCACATTGATGGAGTAGGGGCTGGATATGATGGAGTAGCCATGCTATGAACTATG
GGTGTTCCCATGAGTGTTGCCATGTTCCATGCACACAGATATGACCTTCAGTAAAGAGCTCCCG
TAGGACCTGCTGTGCATATCTTGGACAGCCGGGCTTGAAGCACCAAGGAAGGTGTATGGGAGGG
TGGGTAAGCTGTGGACAGGCACCACACTCAGCAGGTAGAGAGAGCTAATGCAATCCAGGAAAGA
A

hide sequence

RefSeq Acc Id:

XM_008768469 ⟹ XP_008766691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,811,849 - 105,816,641 (+)	NCBI
Rnor_6.0	10	109,711,344 - 109,716,253 (+)	NCBI

Sequence:

show sequence

GGAGGAACTGAGAGTTCCACCTCTTGTTCCAAAGGTAGCTAGGAGAAGGTAGCTGATGTTCATG
GTTTCTGCTGCCCAGGATTTGTCACTGGCGATCCCACATCTTACAGAAAACATCAGGCAGAGGT
GTCCCTCATCTGGGCCCTGGCTAGAAACTGCCCTGGAATGAGGACGAGTGGCCATGGACCTGGG
CACTGGACCCTCGCTCTCTTTATCTGAGCCTGAGGAGAGGTGCACACACCCCCAAGGACCCAGG
CACCCAACCTCTGCCAGATGTGGGGGGGTGGCTACCCAGAGGCATGCTCCTCACCCAGCTCCAC
TGTCCCTACCTGCTGCTGCTGCTGGTGGTGCTGTCATGTCTGAGCTGGTCTGCAACAGAACTTT
CGACAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTCCTGCCCCTGG
TACCTACCTTGGTACCACAAAGTGCAGCACCGCCTAGTGTTCAAGAGGTGTGGGCCTGATGGGC
AGTGGGTTCGAGGGCCACGGGGGCAGTCATGGCGCGACGCCTCCCAATGTCAGATGGATGATGA
CGAGATCGAGGTCCAGAAGGGGGTAGCCAAGATGTATAGCAGCTACCAGGTGATGTACACTGTG
GGCTACAGTCTGTCCCTGGGGGCCTTGCTCCTGGCGCTGGTCATCCTGCTGGGCCTCAGGAAGC
TGCACTGCACCCGGAACTACATCCACGGGAACCTGTTCGCGTCCTTCGTGCTCAAGGCTGGCTC
TGTGCTGGTCATTGATTGGCTGCTCAAGACACGCTATAGCCAGAAGATTGGAGATGACCTCAGT
GTGAGCGTCTGGCTCAGTGATGGGGCGGTGGCTGGCTGCAGAGTGGCCACAGTGATCATGCAGT
ACGGCATCATAGCCAACTACTGCTGGTTGCTGGTGGAGGGTGTGTACCTGTACAGCCTGCTGAG
CATCACCACCTTCTCGGAGAAGAGCTTCTTCTCCCTCTATCTGTGCATCGGCTGGGGATCTCCC
CTGCTGTTTGTCATCCCCTGGGTGGTGGTCAAGTGTCTGTTTGAGAATGTCCAGTGCTGGACCA
GCAATGACAATATGGGATTCTGGTGGATCCTGCGTATCCCTGTACTCCTGGCCATACTGATCAA
TTTTTTCATCTTTGTCCGCATCATTCATCTTCTTGTGGCCAAGCTGCGTGCCCATCAGATGCAC
TATGCTGATTACAAGTTCCGGCTAGCCAGGTCCACGCTGACCCTCATTCCTCTGCTGGGAGTCC
ACGAAGTGGTCTTTGCCTTTGTGACTGATGAGCATGCCCAGGGCACCCTGCGCTCCACCAAGCT
CTTTTTTGACCTGTTCTTCAGCTCCTTCCAGGGTCTGCTGGTGGCTGTTCTCTACTGTTTCCTC
AACAAGGAGTTGCATGCGTCGGATGTCAGGTCCCCTAGGTCCTCAGGGAGCAGGGTTATGAGAT
GGTCCCCGCCTTTCCTGGTGACAAGTGGCCCTGCTGAACCCAATGTAAAACTTGCCTTGCTTTG
GGTCTGCTTAGATTGAGGCTAGGCACCTCAGAGTGGCCCAGTCAGGATCCTAACGAGGTGGGTT
GGCAGAGAAGCCCTACCCCTGGCTCCTCTAGGTGCAGGCAGAGCTACTGCGGCGTTGGAGGCGA
TGGCAAGAAGGCAAAGCTCTTCAGGAGGAAAGGATGGCCAGCAGCCATGGCAGCCACATGGCCC
CAGCAGGGACTTGTCATGGTGATCCCTGTGAGAAACTTCAGCTTATGAGTGCAGGCAGCAGCAG
TGGGACTGGCTGTGAGCCCTCTGCGAAGACCTCATTGGCCAGTAGTCTCCCAAGGCTGGCTGAC
AGCCCCACCTGAATCTCCACTGGACTCCAGCCAAGTTGGATTCAGAAAGGGCCTCACAAGACAA
CCCAGAAACAGATGCCTGGCCAAGGCTGAAGAGGCAAAGCAGCAAGACAGCAGCTTGTACTATC
CACACTCCCCTAACCTGTCCTGGCCGGGTACAGGCCACATTGATGGAGTAGGGGCTGGATATGA
TGGAGTAGCCATGCTATGAACTATGGGTGTTCCCATGAGTGTTGCCATGTTCCATGCACACAGA
TATGACCTTCAGTAAAGAGCTCCCGTAGGACCTGCTGTGCATATCTTGGACAGCCGGGCTTGAA
GCACCAAGGAAGGTGTATGGGAGGGTGGGTAAGCTGTGGACAGGCACCACACTCAGCAGGTAGA
GAGAGCTAATGCAATCCAGGAAAGAA

hide sequence

RefSeq Acc Id:

XM_039085243 ⟹ XP_038941171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,811,938 - 105,816,641 (+)	NCBI

RefSeq Acc Id:

XM_039085244 ⟹ XP_038941172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,812,419 - 105,816,641 (+)	NCBI

RefSeq Acc Id:

XM_039085245 ⟹ XP_038941173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,812,737 - 105,816,641 (+)	NCBI

RefSeq Acc Id:

XM_039085246 ⟹ XP_038941174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,809,186 - 105,816,641 (+)	NCBI

RefSeq Acc Id:

XM_039085247 ⟹ XP_038941175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	105,811,849 - 105,815,075 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_742088	(Get FASTA)	NCBI Sequence Viewer
	NP_742089	(Get FASTA)	NCBI Sequence Viewer
	XP_006247939	(Get FASTA)	NCBI Sequence Viewer
	XP_008766690	(Get FASTA)	NCBI Sequence Viewer
	XP_008766691	(Get FASTA)	NCBI Sequence Viewer
	XP_038941171	(Get FASTA)	NCBI Sequence Viewer
	XP_038941172	(Get FASTA)	NCBI Sequence Viewer
	XP_038941173	(Get FASTA)	NCBI Sequence Viewer
	XP_038941174	(Get FASTA)	NCBI Sequence Viewer
	XP_038941175	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA02992	(Get FASTA)	NCBI Sequence Viewer
	AAA16439	(Get FASTA)	NCBI Sequence Viewer
	AAB16800	(Get FASTA)	NCBI Sequence Viewer
	AAF44750	(Get FASTA)	NCBI Sequence Viewer
	AAH81700	(Get FASTA)	NCBI Sequence Viewer
	CAA48651	(Get FASTA)	NCBI Sequence Viewer
	EDM06848	(Get FASTA)	NCBI Sequence Viewer
	EDM06849	(Get FASTA)	NCBI Sequence Viewer
	EDM06850	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051845
	ENSRNOP00000074632
	ENSRNOP00000074632.1
GenBank Protein	P30082	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_742089 ⟸ NM_172092
- Peptide Label:	precursor
- UniProtKB:	P30082 (UniProtKB/Swiss-Prot), A6HLE4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLTQLHCPYLLLLLVVLSCLPKAPSAQVMDFLFEKWKLYSDQCHHNLSLLPPPTELVCNRTFD KYSCWPDTPPNTTANISCPWYLPWYHKVQHRLVFKRCGPDGQWVRGPRGQSWRDASQCQMDDDE IEVQKGVAKMYSSYQVMYTVGYSLSLGALLLALVILLGLRKLHCTRNYIHGNLFASFVLKAGSV LVIDWLLKTRYSQKIGDDLSVSVWLSDGAVAGCRVATVIMQYGIIANYCWLLVEGVYLYSLLSI TTFSEKSFFSLYLCIGWGSPLLFVIPWVVVKCLFENVQCWTSNDNMGFWWILRIPVLLAILINF FIFVRIIHLLVAKLRAHQMHYADYKFRLARSTLTLIPLLGVHEVVFAFVTDEHAQGTLRSTKLF FDLFFSSFQGLLVAVLYCFLNKEVQAELLRRWRRWQEGKALQEERMASSHGSHMAPAGTCHGDP CEKLQLMSAGSSSGTGCEPSAKTSLASSLPRLADSPT hide sequence

RefSeq Acc Id:	NP_742088 ⟸ NM_172091
- Peptide Label:	precursor
- UniProtKB:	P30082 (UniProtKB/Swiss-Prot), A6HLE4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLTQLHCPYLLLLLVVLSCLPKAPSAQVMDFLFEKWKLYSDQCHHNLSLLPPPTELVCNRTFD KYSCWPDTPPNTTANISCPWYLPWYHKVQHRLVFKRCGPDGQWVRGPRGQSWRDASQCQMDDDE IEVQKGVAKMYSSYQVMYTVGYSLSLGALLLALVILLGLRKLHCTRNYIHGNLFASFVLKAGSV LVIDWLLKTRYSQKIGDDLSVSVWLSDGAVAGCRVATVIMQYGIIANYCWLLVEGVYLYSLLSI TTFSEKSFFSLYLCIGWGSPLLFVIPWVVVKCLFENVQCWTSNDNMGFWWILRIPVLLAILINF FIFVRIIHLLVAKLRAHQMHYADYKFRLARSTLTLIPLLGVHEVVFAFVTDEHAQGTLRSTKLF FDLFFSSFQGLLVAVLYCFLNKEVQAELLRRWRRWQEGKALQEERMASSHGSHMAPAGTCHGDP CEKLQLMSAGSSSGTGCEPSAKTSLASSLPRLADSPT hide sequence

RefSeq Acc Id:

XP_006247939 ⟸ XM_006247877

- Peptide Label:

isoform X4

- Sequence:

show sequence

MLLTQLHCPYLLLLLVVLSCLSWSATELSTSTPAGLTPLPTPLPTFPAPGTYLGTTKHRLVFKR
CGPDGQWVRGPRGQSWRDASQCQMDDDEIEVQKGVAKMYSSYQVMYTVGYSLSLGALLLALVIL
LGLRKLHCTRNYIHGNLFASFVLKAGSVLVIDWLLKTRYSQKIGDDLSVSVWLSDGAVAGCRVA
TVIMQYGIIANYCWLLVEGVYLYSLLSITTFSEKSFFSLYLCIGWGSPLLFVIPWVVVKCLFEN
VQCWTSNDNMGFWWILRIPVLLAILINFFIFVRIIHLLVAKLRAHQMHYADYKFRLARSTLTLI
PLLGVHEVVFAFVTDEHAQGTLRSTKLFFDLFFSSFQGLLVAVLYCFLNKEVQAELLRRWRRWQ
EGKALQEERMASSHGSHMAPAGTCHGDPCEKLQLMSAGSSSGTGCEPSAKTSLASSLPRLADSP
T

hide sequence

RefSeq Acc Id:

XP_008766691 ⟸ XM_008768469

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDLGTGPSLSLSEPEERCTHPQGPRHPTSARCGGVATQRHAPHPAPLSLPAAAAGGAVMSELVC
NRTFDKYSCWPDTPPNTTANISCPWYLPWYHKVQHRLVFKRCGPDGQWVRGPRGQSWRDASQCQ
MDDDEIEVQKGVAKMYSSYQVMYTVGYSLSLGALLLALVILLGLRKLHCTRNYIHGNLFASFVL
KAGSVLVIDWLLKTRYSQKIGDDLSVSVWLSDGAVAGCRVATVIMQYGIIANYCWLLVEGVYLY
SLLSITTFSEKSFFSLYLCIGWGSPLLFVIPWVVVKCLFENVQCWTSNDNMGFWWILRIPVLLA
ILINFFIFVRIIHLLVAKLRAHQMHYADYKFRLARSTLTLIPLLGVHEVVFAFVTDEHAQGTLR
STKLFFDLFFSSFQGLLVAVLYCFLNKELHASDVRSPRSSGSRVMRWSPPFLVTSGPAEPNVKL
ALLWVCLD

hide sequence

RefSeq Acc Id:

XP_008766690 ⟸ XM_008768468

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDLGTGPSLSLSEPEERCTHPQGPRHPTSARCGGVATQRHAPHPAPLSLPAAAAGGAVMSELVC
NRTFDKYSCWPDTPPNTTANISCPWYLPWYHKVQHRLVFKRCGPDGQWVRGPRGQSWRDASQCQ
MDDDEIEVQKGVAKMYSSYQVMYTVGYSLSLGALLLALVILLGLRKLHCTRNYIHGNLFASFVL
KAGSVLVIDWLLKTRYSQKIGDDLSVSVWLSDGAVAGCRVATVIMQYGIIANYCWLLVEGVYLY
SLLSITTFSEKSFFSLYLCIGWGSPLLFVIPWVVVKCLFENVQCWTSNDNMGFWWILRIPVLLA
ILINFFIFVRIIHLLVAKLRAHQMHYADYKFRLARSTLTLIPLLGVHEVVFAFVTDEHAQGTLR
STKLFFDLFFSSFQGLLVAVLYCFLNKEVQAELLRRWRRWQEGKALQEERMASSHGSHMAPAGT
CHGDPCEKLQLMSAGSSSGTGCEPSAKTSLASSLPRLADSPT

hide sequence

RefSeq Acc Id:

ENSRNOP00000074929 ⟸ ENSRNOT00000083601

RefSeq Acc Id:

ENSRNOP00000074632 ⟸ ENSRNOT00000088898

RefSeq Acc Id:

ENSRNOP00000051845 ⟸ ENSRNOT00000054962

RefSeq Acc Id:	XP_038941174 ⟸ XM_039085246
- Peptide Label:	isoform X7
- UniProtKB:	Q66HT0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941175 ⟸ XM_039085247
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038941171 ⟸ XM_039085243
- Peptide Label:	isoform X2
- UniProtKB:	P30082 (UniProtKB/Swiss-Prot), A6HLE4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941172 ⟸ XM_039085244
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038941173 ⟸ XM_039085245
- Peptide Label:	isoform X6
- UniProtKB:	Q66HT0 (UniProtKB/TrEMBL)

Protein Domains

G-protein coupled receptors family 2 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P30082-F1-model_v2	AlphaFold	P30082	1-485	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697961

Promoter ID:

EPDNEW_R8485

Type:

initiation region

Name:

Gcgr_1

Description:

glucagon receptor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	109,707,882 - 109,707,942	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2669	AgrOrtholog
BioCyc Gene	G2FUF-22413	BioCyc
Ensembl Genes	ENSRNOG00000036692	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000054962	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000088898	ENTREZGENE
	ENSRNOT00000088898.2	UniProtKB/TrEMBL
Gene3D-CATH	4.10.1240.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7192550	IMAGE-MGC_LOAD
InterPro	GPCR_2-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_extracell_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_extracellular_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_GLP1/glucagon_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_glucagon_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_secretin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_secretin-like_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:24953	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93090	IMAGE-MGC_LOAD
NCBI Gene	24953	ENTREZGENE
PANTHER	GLUCAGON RECEPTOR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDF RECEPTOR-LIKE PROTEIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	7tm_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gcgr	PhenoGen
PRINTS	GLUCAGNFAMLY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GLUCAGONR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCRSECRETIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000036692	RatGTEx
SMART	HormR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Hormone receptor domain	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A6HLE4	ENTREZGENE, UniProtKB/TrEMBL
	A6HLE5_RAT	UniProtKB/TrEMBL
	GLR_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q66HT0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Gcgr	glucagon receptor			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_function	transduces signals leading to the accumulation of cAMP and calcium	61488
gene_other	may be a candidate gene for Niddm3	61488
gene_process	participates in glucose stimulation	625576
gene_process	controls blood glucose concentrations	61488
gene_transcript	non-coding domain from -545 and -527 nucleotides has a 19 nucleotide centered 2 G boxes	625576

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

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