TP63 (tumor protein p63) - Rat Genome Database

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Gene: TP63 (tumor protein p63) Homo sapiens
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Symbol: TP63
Name: tumor protein p63
RGD ID: 1604844
HGNC Page HGNC
Description: Enables several functions, including MDM2/MDM4 family protein binding activity; WW domain binding activity; and p53 binding activity. Involved in several processes, including negative regulation of cellular senescence; positive regulation of fibroblast apoptotic process; and regulation of transcription, DNA-templated. Located in chromatin; cytoplasm; and nucleoplasm. Implicated in several diseases, including ADULT syndrome; EEC syndrome (multiple); ectodermal dysplasia (multiple); orofacial cleft 8; and split hand-foot malformation 4. Biomarker of cervix uteri carcinoma in situ; prostate carcinoma in situ; and urinary bladder cancer.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AIS; amplified in squamous cell carcinoma; B(p51A); B(p51B); chronic ulcerative stomatitis protein; CUSP; EEC3; keratinocyte transcription factor KET; KET; LMS; NBP; OFC8; p40; p51; p53CP; p63; p73H; p73L; RHS; SHFM4; TP53CP; TP53L; TP73L; transformation-related protein 63; tumor protein 63; tumor protein p53-competing protein; tumor protein p53-like; tumor protein p63 deltaN isoform delta; tumor protein p73-like
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3189,631,389 - 189,897,276 (+)EnsemblGRCh38hg38GRCh38
GRCh383189,596,746 - 189,897,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373189,314,535 - 189,615,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363190,831,910 - 191,097,759 (+)NCBINCBI36hg18NCBI36
Celera3187,783,803 - 188,042,610 (+)NCBI
Cytogenetic Map3q28NCBI
HuRef3186,752,882 - 187,012,887 (+)NCBIHuRef
CHM1_13189,312,090 - 189,577,623 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
adenocarcinoma  (EXP)
ADULT syndrome  (IAGP)
amenorrhea  (IAGP)
ankyloblepharon-ectodermal defects-cleft lip/palate syndrome  (EXP,IAGP)
bladder exstrophy  (ISS)
bladder exstrophy-epispadias-cloacal exstrophy complex  (IAGP)
breast disease  (EXP)
Breast Neoplasms  (ISO)
carcinoma  (EXP)
cervix uteri carcinoma in situ  (IEP)
cleft lip  (EXP,IAGP)
cleft palate  (EXP)
Colorectal Neoplasms  (EXP)
Congenital Foot Deformities  (EXP)
Congenital Hand Deformities  (EXP)
Congenital Limb Deformities  (EXP,IAGP)
Corneal Injuries  (ISO)
Craniofacial Abnormalities  (EXP)
ectodermal dysplasia  (IAGP)
ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3  (EXP,IAGP)
EEC syndrome  (EXP,IAGP,ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Neoplasms  (ISO)
Female Urogenital Diseases  (EXP)
gastroesophageal reflux disease  (ISS)
genetic disease  (IAGP)
Limb-Mammary Syndrome  (EXP,IAGP)
lung adenocarcinoma  (EXP)
Lung Neoplasms  (EXP)
Multiple Abnormalities  (EXP)
muscular dystrophy  (IAGP)
Neoplasm Metastasis  (EXP)
Neoplastic Cell Transformation  (EXP)
orofacial cleft 8  (IAGP)
Ovarian Neoplasms  (EXP,IAGP)
pancreatic cancer  (EXP)
primary ovarian insufficiency  (IAGP)
prostate cancer  (IAGP)
prostate carcinoma in situ  (IEP,ISO)
Prostatic Neoplasms  (IEP,ISO)
Rapp-Hodgkin syndrome  (EXP,IAGP)
schizophrenia  (IAGP)
Skin Abnormalities  (EXP)
split hand-foot malformation  (IAGP)
split hand-foot malformation 4  (EXP,IAGP)
squamous cell carcinoma  (EXP)
squamous cell neoplasm  (EXP)
Sweat Gland Neoplasms  (EXP)
transitional cell carcinoma  (IMP)
urinary bladder cancer  (IEP)
Urologic Neoplasms  (IEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dibromoethane  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2-hydroxypropanoic acid  (EXP)
3,4-dichloroaniline  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (EXP)
4-vinylcyclohexene dioxide  (ISO)
acrylamide  (ISO)
afimoxifene  (EXP)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (EXP)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antimonite  (EXP)
antirheumatic drug  (EXP)
apigenin  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
butan-1-ol  (EXP)
butane-2,3-dione  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calcitriol  (EXP)
camptothecin  (EXP)
carbon nanotube  (ISO)
chloropicrin  (EXP)
chrysin  (EXP)
cisplatin  (EXP)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
crocidolite asbestos  (EXP)
cycloheximide  (EXP)
diarsenic trioxide  (EXP)
dibenzo[a,l]pyrene  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (EXP)
diuron  (ISO)
dorsomorphin  (EXP)
emodin  (ISO)
entinostat  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (EXP)
ethylenediaminetetraacetic acid  (EXP)
eugenol  (EXP)
formaldehyde  (EXP)
Fusarenone X  (ISO)
genistein  (EXP,ISO)
glycidol  (ISO)
graphite  (ISO)
hydroxyurea  (ISO)
isobutanol  (EXP)
kaempferol  (EXP)
ketoconazole  (ISO)
lactacystin  (EXP)
lead diacetate  (ISO)
leptomycin B  (EXP)
lithium chloride  (EXP)
luteolin  (EXP)
melphalan  (EXP)
methyl methanesulfonate  (EXP)
methylmercury chloride  (ISO)
myricetin  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
nickel dichloride  (EXP)
panobinostat  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (EXP)
PhIP  (ISO)
progesterone  (EXP)
quercetin  (EXP)
quercitrin  (EXP)
quinolin-8-ol  (ISO)
rac-lactic acid  (EXP)
resveratrol  (EXP)
SB 431542  (EXP)
silicon dioxide  (EXP)
sirolimus  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (ISO)
trichostatin A  (EXP)
trimellitic anhydride  (ISO)
troglitazone  (EXP)
urethane  (EXP)
valproic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (IEA,ISO)
anatomical structure formation involved in morphogenesis  (IEA,ISO)
animal organ morphogenesis  (IEA,ISO)
apoptotic process  (IEA,TAS)
cell aging  (IEA,ISO)
cell differentiation  (IEA,ISO)
cell population proliferation  (IEA,ISO)
cellular response to DNA damage stimulus  (IDA)
chromatin remodeling  (IEA,ISO)
cloacal septation  (IEA,ISO)
cranial skeletal system development  (IEA,ISO)
developmental process  (IEA)
ectoderm and mesoderm interaction  (IEA,ISO)
embryonic forelimb morphogenesis  (IEA,ISO)
embryonic hindlimb morphogenesis  (IEA,ISO)
embryonic limb morphogenesis  (IEA,ISO)
epidermal cell differentiation  (IEA,ISO)
epidermal cell division  (IEA,ISO)
epidermis development  (IEA,ISO)
epithelial cell development  (IEA,ISO)
epithelial cell differentiation  (IEA,ISO)
establishment of planar polarity  (IEA,ISO)
establishment of skin barrier  (IEA,ISS)
female genitalia morphogenesis  (IEA,ISO)
hair follicle development  (IEA,ISO)
hair follicle morphogenesis  (IEA,ISO)
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  (IEA,ISO)
keratinocyte differentiation  (IEA,ISO)
keratinocyte proliferation  (ISO)
morphogenesis of a polarized epithelium  (IEA,ISO)
multicellular organism aging  (IEA,ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cellular senescence  (IMP)
negative regulation of intracellular estrogen receptor signaling pathway  (IEA)
negative regulation of keratinocyte differentiation  (IEA,ISO)
negative regulation of mesoderm development  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
negative regulation of transcription, DNA-templated  (IDA)
neuron apoptotic process  (IEA,ISO)
Notch signaling pathway  (IEA)
odontogenesis of dentin-containing tooth  (IEA,ISO)
pattern specification process  (IEA,ISO)
polarized epithelial cell differentiation  (IEA,ISO)
positive regulation of apoptotic signaling pathway  (IEA,ISO)
positive regulation of cell cycle G1/S phase transition  (IMP)
positive regulation of cell population proliferation  (IEA,ISO)
positive regulation of fibroblast apoptotic process  (IDA)
positive regulation of keratinocyte proliferation  (IEA,ISO)
positive regulation of mesenchymal cell proliferation  (ISO)
positive regulation of Notch signaling pathway  (IDA,IEA,ISO)
positive regulation of osteoblast differentiation  (IMP)
positive regulation of somatic stem cell population maintenance  (IEA)
positive regulation of transcription by RNA polymerase II  (IDA,IEA,ISO)
positive regulation of transcription, DNA-templated  (IDA,IEA,IMP,NAS)
post-anal tail morphogenesis  (IEA,ISO)
prostate gland development  (IEA,ISO)
prostatic bud formation  (IEA,ISO)
protein tetramerization  (IEA)
proximal/distal pattern formation  (IEA,ISO)
regulation of cysteine-type endopeptidase activity involved in apoptotic process  (IEA,ISO)
regulation of epidermal cell division  (IEA,ISS)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transcription, DNA-templated  (IEA)
skeletal system development  (IEA,ISO)
skin epidermis development  (IEA,ISO)
skin morphogenesis  (IEA,ISO)
smooth muscle tissue development  (ISO)
spermatogenesis  (IEA,ISO)
squamous basal epithelial stem cell differentiation involved in prostate gland acinus development  (IEA,ISO)
sympathetic nervous system development  (IEA,ISO)
urinary bladder development  (ISO)

Cellular Component
chromatin  (IDA,ISA)
cytoplasm  (IDA,IEA)
dendrite  (IEA,ISO)
neuron projection  (IEA,ISO)
nucleoplasm  (IDA,TAS)
nucleus  (IDA,IEA,ISO,NAS)
protein-containing complex  (IEA,ISO)
rough endoplasmic reticulum  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
2-3 toe syndactyly  (IAGP)
3-4 finger cutaneous syndactyly  (IAGP)
Abnormal dental enamel morphology  (IAGP)
Abnormal nasal morphology  (IAGP)
Abnormal nasopharynx morphology  (IAGP)
Abnormal number of permanent teeth  (IAGP)
Abnormal pattern of respiration  (IAGP)
Abnormality of dental eruption  (IAGP)
Abnormality of dental morphology  (IAGP)
Abnormality of masticatory muscle  (IAGP)
Abnormality of the anus  (IAGP)
Abnormality of the clitoris  (IAGP)
Abnormality of the Eustachian tube  (IAGP)
Abnormality of the inner ear  (IAGP)
Abnormality of the middle ear  (IAGP)
Abnormality of the nasal septum  (IAGP)
Abnormality of the nervous system  (IAGP)
Abnormality of the voice  (IAGP)
Absence of Stensen duct  (IAGP)
Absent eyelashes  (IAGP)
Absent hand  (IAGP)
Absent lacrimal punctum  (IAGP)
Absent nipple  (IAGP)
Adermatoglyphia  (IAGP)
Agenesis of lateral incisor  (IAGP)
Alopecia  (IAGP)
Alopecia of scalp  (IAGP)
Anhidrosis  (IAGP)
Anhidrotic ectodermal dysplasia  (IAGP)
Aniridia  (IAGP)
Ankyloblepharon  (IAGP)
Anonychia  (IAGP)
Aplasia of the ovary  (IAGP)
Aplasia of the uterus  (IAGP)
Aplasia/Hypoplasia involving the metacarpal bones  (IAGP)
Aplasia/Hypoplasia of metatarsal bones  (IAGP)
Aplasia/Hypoplasia of the breasts  (IAGP)
Aplasia/Hypoplasia of the nipples  (IAGP)
Aplasia/Hypoplasia of the phalanges of the hand  (IAGP)
Aplasia/Hypoplasia of the phalanges of the toes  (IAGP)
Aplasia/Hypoplasia of the skin  (IAGP)
Aplasia/Hypoplasia of the thumb  (IAGP)
Atresia of the external auditory canal  (IAGP)
Autosomal dominant inheritance  (IAGP)
Bifid uvula  (IAGP)
Bilateral breast hypoplasia  (IAGP)
Bilateral cleft lip  (IAGP)
Bilateral cleft palate  (IAGP)
Bladder diverticulum  (IAGP)
Bladder exstrophy  (IAGP)
Blepharitis  (IAGP)
Blepharophimosis  (IAGP)
Blue irides  (IAGP)
Bowel incontinence  (IAGP)
Breast aplasia  (IAGP)
Breast hypoplasia  (IAGP)
Camptodactyly  (IAGP)
Carious teeth  (IAGP)
Central diabetes insipidus  (IAGP)
Choanal atresia  (IAGP)
Chronic irritative conjunctivitis  (IAGP)
Chronic otitis media  (IAGP)
Cleft hard palate  (IAGP)
Cleft lip  (IAGP)
Cleft palate  (IAGP)
Cleft upper lip  (IAGP)
Clinodactyly of the 5th finger  (IAGP)
Coarse hair  (IAGP)
Conductive hearing impairment  (IAGP)
Conical tooth  (IAGP)
Conjunctivitis  (IAGP)
Corneal erosion  (IAGP)
Cryptorchidism  (IAGP)
Cutaneous photosensitivity  (IAGP)
Dacryocystitis  (IAGP)
Decreased number of sweat glands  (IAGP)
Decreased response to growth hormone stimulation test  (IAGP)
Delayed eruption of teeth  (IAGP)
Delayed speech and language development  (IAGP)
Dental malocclusion  (IAGP)
Depressed nasal bridge  (IAGP)
Depressed nasal tip  (IAGP)
Dermal atrophy  (IAGP)
Disturbance of facial expression  (IAGP)
Dry skin  (IAGP)
Duplicated collecting system  (IAGP)
Dysphagia  (IAGP)
Dystrophic fingernails  (IAGP)
Dystrophic toenail  (IAGP)
Ectodermal dysplasia  (IAGP)
Ectrodactyly  (IAGP)
Eczema  (IAGP)
Entropion  (IAGP)
Epispadias  (IAGP)
External ear malformation  (IAGP)
Fair hair  (IAGP)
Fine hair  (IAGP)
Finger syndactyly  (IAGP)
Fingernail dysplasia  (IAGP)
Freckling  (IAGP)
Generalized hyperpigmentation  (IAGP)
Generalized hypopigmentation  (IAGP)
Hallux valgus  (IAGP)
Hearing impairment  (IAGP)
High forehead  (IAGP)
Hydronephrosis  (IAGP)
Hydroureter  (IAGP)
Hyperconvex fingernails  (IAGP)
Hyperconvex nail  (IAGP)
Hyperkeratosis  (IAGP)
Hyperpigmentation of the skin  (IAGP)
Hypodontia  (IAGP)
Hypogonadotropic hypogonadism  (IAGP)
Hypohidrosis  (IAGP)
Hypoplasia of penis  (IAGP)
Hypoplasia of the maxilla  (IAGP)
Hypoplasia of the thymus  (IAGP)
Hypoplastic labia majora  (IAGP)
Hypoplastic nipples  (IAGP)
Hypospadias  (IAGP)
Impaired mastication  (IAGP)
Inguinal hernia  (IAGP)
Intellectual disability  (IAGP)
Intestinal malrotation  (IAGP)
Joint contracture of the hand  (IAGP)
Keratitis  (IAGP)
Lacrimal duct atresia  (IAGP)
Lacrimation abnormality  (IAGP)
Lip pit  (IAGP)
Low self esteem  (IAGP)
Lymphoma  (IAGP)
Macrodontia  (IAGP)
Malar flattening  (IAGP)
Malnutrition  (IAGP)
Maternal teratogenic exposure  (IAGP)
Megacystis  (IAGP)
Melanocytic nevus  (IAGP)
Microdontia  (IAGP)
Micrognathia  (IAGP)
Micropenis  (IAGP)
Microtia  (IAGP)
Multiple cafe-au-lait spots  (IAGP)
Muscular dystrophy  (IAGP)
Nail dysplasia  (IAGP)
Nail dystrophy  (IAGP)
Nail pits  (IAGP)
Narrow mouth  (IAGP)
Narrow nose  (IAGP)
Nasal speech  (IAGP)
Nasolacrimal duct obstruction  (IAGP)
Nevus  (IAGP)
Non-midline cleft lip  (IAGP)
Oligodactyly  (IAGP)
Oligodontia  (IAGP)
Omphalocele  (IAGP)
Onychogryposis  (IAGP)
Oral cleft  (IAGP)
Oral-pharyngeal dysphagia  (IAGP)
Oval face  (IAGP)
Palate fistula  (IAGP)
Palmoplantar keratoderma  (IAGP)
Patchy alopecia  (IAGP)
Patent ductus arteriosus  (IAGP)
Peg-shaped maxillary lateral incisors  (IAGP)
Photophobia  (IAGP)
Pili canaliculi  (IAGP)
Polyhydramnios  (IAGP)
Poor suck  (IAGP)
Premature loss of permanent teeth  (IAGP)
Premature ovarian insufficiency  (IAGP)
Primary amenorrhea  (IAGP)
Progressive alopecia  (IAGP)
Prominent nasal bridge  (IAGP)
Prostate cancer  (IAGP)
Protruding ear  (IAGP)
Proximal placement of thumb  (IAGP)
Psoriasiform dermatitis  (IAGP)
Ptosis  (IAGP)
Recurrent otitis media  (IAGP)
Recurrent urinary tract infections  (IAGP)
Renal agenesis  (IAGP)
Renal dysplasia  (IAGP)
Renal hypoplasia/aplasia  (IAGP)
Schizophrenia  (IAGP)
Selective tooth agenesis  (IAGP)
Sensorineural hearing impairment  (IAGP)
Short stature  (IAGP)
Situs inversus totalis  (IAGP)
Skin ulcer  (IAGP)
Slow-growing hair  (IAGP)
Small for gestational age  (IAGP)
Small nail  (IAGP)
Small, conical teeth  (IAGP)
Sparse and thin eyebrow  (IAGP)
Sparse axillary hair  (IAGP)
Sparse body hair  (IAGP)
Sparse eyebrow  (IAGP)
Sparse eyelashes  (IAGP)
Sparse hair  (IAGP)
Sparse pubic hair  (IAGP)
Sparse scalp hair  (IAGP)
Specific learning disability  (IAGP)
Speech articulation difficulties  (IAGP)
Split foot  (IAGP)
Split hand  (IAGP)
Submucous cleft hard palate  (IAGP)
Submucous cleft soft palate  (IAGP)
Supernumerary maxillary incisor  (IAGP)
Supernumerary nipple  (IAGP)
Syndactyly  (IAGP)
Talipes equinovarus  (IAGP)
Taurodontia  (IAGP)
Thick eyebrow  (IAGP)
Thin skin  (IAGP)
Toe syndactyly  (IAGP)
Toenail dysplasia  (IAGP)
Tooth agenesis  (IAGP)
Transverse vaginal septum  (IAGP)
Triphalangeal thumb  (IAGP)
Umbilical hernia  (IAGP)
Underdeveloped nasal alae  (IAGP)
Unilateral cleft palate  (IAGP)
Ureterocele  (IAGP)
Urethral atresia  (IAGP)
Urethral stenosis  (IAGP)
Vaginal dryness  (IAGP)
Velopharyngeal insufficiency  (IAGP)
Ventricular septal defect  (IAGP)
Vesicoureteral reflux  (IAGP)
Wide intermamillary distance  (IAGP)
Wide nasal bridge  (IAGP)
Widely spaced teeth  (IAGP)
Xerostomia  (IAGP)
References

References - curated
1. Alves LU, etal., Genet Mol Biol. 2015 Mar;38(1):37-41. doi: 10.1590/S1415-475738120140125. Epub 2014 Mar 17.
2. Arcolino FO, etal., Int J Exp Pathol. 2010 Apr;91(2):144-54. doi: 10.1111/j.1365-2613.2009.00696.x. Epub 2009 Dec 22.
3. Barrow LL, etal., J Med Genet. 2002 Aug;39(8):559-66.
4. Celli J, etal., Cell. 1999 Oct 15;99(2):143-53.
5. Clements SE, etal., Br J Dermatol. 2010 Jan;162(1):201-7. doi: 10.1111/j.1365-2133.2009.09496.x. Epub 2009 Nov 9.
6. Eisenkraft A, etal., Fetal Pediatr Pathol. 2015;34(6):400-6. doi: 10.3109/15513815.2015.1095261. Epub 2015 Oct 16.
7. Freed-Pastor WA and Prives C, Genes Dev. 2012 Jun 15;26(12):1268-86. doi: 10.1101/gad.190678.112.
8. He Y, etal., J Korean Med Sci. 2008 Oct;23(5):825-32.
9. Kruslin B, etal., Pathol Oncol Res. 2006;12(4):205-9. Epub 2006 Dec 25.
10. Lin Z, etal., J Cancer Res Clin Oncol. 2006 Dec;132(12):811-6. Epub 2006 Jun 28.
11. Marchini S, etal., Ann Oncol. 2008 Mar;19(3):501-7. Epub 2007 Nov 12.
12. McGrath JA, etal., Hum Mol Genet. 2001 Feb 1;10(3):221-9.
13. Moore JE, etal., DNA Cell Biol. 2002 May-Jun;21(5-6):443-51.
14. Muller PA and Vousden KH, Nat Cell Biol. 2013 Jan;15(1):2-8. doi: 10.1038/ncb2641.
15. OMIM Disease Annotation Pipeline
16. Ray AK, etal., Clin Genet. 2004 Sep;66(3):217-22.
17. Reiner T, etal., Mol Cancer Res. 2007 Nov;5(11):1171-9. Epub 2007 Nov 2.
18. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. RGD automated import pipeline for gene-chemical interactions
20. RGD automated import pipeline for human HPO-to-gene-to-disease annotations
21. South AP, etal., Br J Dermatol. 2002 Feb;146(2):216-20.
22. Stepan A, etal., Rom J Morphol Embryol. 2009;50(3):461-5.
23. Su P, etal., Int J Colorectal Dis. 2013 Dec;28(12):1621-7. doi: 10.1007/s00384-013-1725-6. Epub 2013 Jun 5.
24. Tuna B, etal., Anal Quant Cytol Histol. 2009 Apr;31(2):118-22.
25. van Bokhoven H, etal., Am J Hum Genet. 2001 Sep;69(3):481-92. Epub 2001 Jul 17.
26. Vernersson Lindahl E, etal., Am J Med Genet A. 2013 Aug;161A(8):1961-71. doi: 10.1002/ajmg.a.36074. Epub 2013 Jun 14.
27. Wei J, etal., PLoS One. 2012;7(5):e35337. doi: 10.1371/journal.pone.0035337. Epub 2012 May 4.
28. Wilkins S, etal., PLoS Genet. 2012;8(12):e1003070. doi: 10.1371/journal.pgen.1003070. Epub 2012 Dec 20.
29. Yin W, etal., J Dent Res. 2010 Aug;89(8):813-7. doi: 10.1177/0022034510366804. Epub 2010 Apr 21.
Additional References at PubMed
PMID:8695800   PMID:8889548   PMID:9405685   PMID:9618472   PMID:9662346   PMID:9662378   PMID:9703973   PMID:9774969   PMID:9799226   PMID:9799841   PMID:10373484   PMID:10469295  
PMID:10485447   PMID:10657951   PMID:10744705   PMID:10805802   PMID:10839977   PMID:10935472   PMID:11106548   PMID:11181441   PMID:11181451   PMID:11238924   PMID:11248048   PMID:11278685  
PMID:11336476   PMID:11477076   PMID:11528512   PMID:11532371   PMID:11641404   PMID:11714701   PMID:11727253   PMID:11733180   PMID:11739646   PMID:11787035   PMID:11839669   PMID:11879774  
PMID:11893750   PMID:11925430   PMID:11929852   PMID:11932750   PMID:11957139   PMID:11971180   PMID:12037717   PMID:12086851   PMID:12102658   PMID:12185332   PMID:12357472   PMID:12358808  
PMID:12368193   PMID:12374749   PMID:12379767   PMID:12379768   PMID:12393879   PMID:12446779   PMID:12446784   PMID:12477932   PMID:12481011   PMID:12525544   PMID:12533521   PMID:12534798  
PMID:12640112   PMID:12653579   PMID:12692135   PMID:12750249   PMID:12782800   PMID:12788532   PMID:12815266   PMID:12939657   PMID:12954772   PMID:12969350   PMID:14519656   PMID:14555649  
PMID:14599865   PMID:14654522   PMID:14654529   PMID:14656652   PMID:14684701   PMID:14729977   PMID:14757278   PMID:15001991   PMID:15024707   PMID:15201986   PMID:15254760   PMID:15339933  
PMID:15359011   PMID:15367673   PMID:15389254   PMID:15467455   PMID:15489334   PMID:15489655   PMID:15529180   PMID:15539951   PMID:15551738   PMID:15578720   PMID:15611636   PMID:15761962  
PMID:15846104   PMID:15875781   PMID:15922574   PMID:15944736   PMID:15965232   PMID:15983386   PMID:15988020   PMID:15988026   PMID:16007146   PMID:16082248   PMID:16133456   PMID:16152605  
PMID:16181796   PMID:16187309   PMID:16258268   PMID:16273188   PMID:16273287   PMID:16283378   PMID:16319057   PMID:16319531   PMID:16322335   PMID:16324199   PMID:16343436   PMID:16375115  
PMID:16398404   PMID:16406339   PMID:16410722   PMID:16413471   PMID:16417229   PMID:16446369   PMID:16449968   PMID:16462763   PMID:16481749   PMID:16516862   PMID:16575619   PMID:16581802  
PMID:16616891   PMID:16618808   PMID:16630179   PMID:16646404   PMID:16679535   PMID:16681687   PMID:16681688   PMID:16715076   PMID:16740912   PMID:16831876   PMID:16842248   PMID:16908849  
PMID:16979518   PMID:17018588   PMID:17050669   PMID:17106255   PMID:17122775   PMID:17159913   PMID:17172858   PMID:17188034   PMID:17276940   PMID:17312919   PMID:17336302   PMID:17385050  
PMID:17392828   PMID:17399686   PMID:17404570   PMID:17446929   PMID:17498688   PMID:17499344   PMID:17521434   PMID:17525625   PMID:17581882   PMID:17582001   PMID:17599745   PMID:17606614  
PMID:17609671   PMID:17615180   PMID:17637746   PMID:17637751   PMID:17688405   PMID:17716971   PMID:17822623   PMID:17880529   PMID:17903252   PMID:17905096   PMID:17915261   PMID:17951196  
PMID:17965458   PMID:17984111   PMID:18029348   PMID:18037962   PMID:18048390   PMID:18064689   PMID:18085379   PMID:18087216   PMID:18192965   PMID:18194839   PMID:18198175   PMID:18199584  
PMID:18203782   PMID:18246802   PMID:18256694   PMID:18256893   PMID:18275817   PMID:18311114   PMID:18317223   PMID:18328806   PMID:18330953   PMID:18364388   PMID:18411264   PMID:18412244  
PMID:18418053   PMID:18432259   PMID:18483491   PMID:18515319   PMID:18593911   PMID:18603493   PMID:18615589   PMID:18626511   PMID:18633439   PMID:18662989   PMID:18676680   PMID:18726671  
PMID:18769144   PMID:18792980   PMID:18794855   PMID:18801085   PMID:18806757   PMID:18813120   PMID:18813784   PMID:18831009   PMID:18833815   PMID:18927586   PMID:18937546   PMID:18951877  
PMID:18971778   PMID:19032382   PMID:19049519   PMID:19068396   PMID:19089994   PMID:19092634   PMID:19119599   PMID:19124002   PMID:19142959   PMID:19160863   PMID:19170196   PMID:19188816  
PMID:19239083   PMID:19239089   PMID:19267405   PMID:19274049   PMID:19278431   PMID:19282665   PMID:19342891   PMID:19345189   PMID:19347829   PMID:19353588   PMID:19369629   PMID:19430419  
PMID:19450441   PMID:19451233   PMID:19458633   PMID:19517019   PMID:19526317   PMID:19530185   PMID:19577853   PMID:19578750   PMID:19586494   PMID:19622632   PMID:19625176   PMID:19668228  
PMID:19676060   PMID:19690760   PMID:19692168   PMID:19700772   PMID:19725154   PMID:19773378   PMID:19781362   PMID:19815500   PMID:19829080   PMID:19843673   PMID:19858204   PMID:19898465  
PMID:19898932   PMID:19920075   PMID:20016275   PMID:20023394   PMID:20038814   PMID:20052674   PMID:20078223   PMID:20081800   PMID:20085233   PMID:20100581   PMID:20107313   PMID:20123734  
PMID:20145131   PMID:20150431   PMID:20182342   PMID:20189848   PMID:20211142   PMID:20219920   PMID:20298673   PMID:20308539   PMID:20348956   PMID:20357260   PMID:20379195   PMID:20379614  
PMID:20403333   PMID:20424325   PMID:20442293   PMID:20445549   PMID:20457941   PMID:20463571   PMID:20523354   PMID:20556892   PMID:20559324   PMID:20571051   PMID:20607803   PMID:20613985  
PMID:20634891   PMID:20638300   PMID:20644729   PMID:20656547   PMID:20714441   PMID:20729916   PMID:20829881   PMID:20855944   PMID:20871597   PMID:20888799   PMID:20950370   PMID:20951678  
PMID:20959455   PMID:20962848   PMID:20972438   PMID:20972454   PMID:21036415   PMID:21042780   PMID:21048031   PMID:21063684   PMID:21075072   PMID:21078104   PMID:21088494   PMID:21088498  
PMID:21114965   PMID:21115930   PMID:21127199   PMID:21129360   PMID:21150337   PMID:21164283   PMID:21170261   PMID:21181306   PMID:21191146   PMID:21204238   PMID:21234707   PMID:21289519  
PMID:21299870   PMID:21300884   PMID:21317427   PMID:21317878   PMID:21319317   PMID:21325799   PMID:21325887   PMID:21326813   PMID:21335238   PMID:21356385   PMID:21363924   PMID:21364617  
PMID:21367858   PMID:21373745   PMID:21402718   PMID:21417823   PMID:21427767   PMID:21434540   PMID:21447682   PMID:21464285   PMID:21478550   PMID:21511729   PMID:21520071   PMID:21527555  
PMID:21576089   PMID:21586512   PMID:21602882   PMID:21610222   PMID:21623182   PMID:21623385   PMID:21631272   PMID:21631996   PMID:21637289   PMID:21643019   PMID:21646640   PMID:21652629  
PMID:21674157   PMID:21690062   PMID:21703418   PMID:21705376   PMID:21715473   PMID:21717589   PMID:21725308   PMID:21741598   PMID:21741828   PMID:21760596   PMID:21765392   PMID:21777423  
PMID:21789189   PMID:21802344   PMID:21821031   PMID:21833468   PMID:21873635   PMID:21880709   PMID:21881870   PMID:21897369   PMID:21898690   PMID:21898830   PMID:21933882   PMID:21959367  
PMID:21965674   PMID:21967648   PMID:21980285   PMID:21986963   PMID:21988832   PMID:21994760   PMID:22007675   PMID:22020940   PMID:22027432   PMID:22053213   PMID:22056305   PMID:22056955  
PMID:22065540   PMID:22069181   PMID:22071691   PMID:22075982   PMID:22076464   PMID:22096589   PMID:22100306   PMID:22158419   PMID:22184109   PMID:22228303   PMID:22240899   PMID:22247000  
PMID:22247550   PMID:22252508   PMID:22253920   PMID:22257901   PMID:22287651   PMID:22310392   PMID:22342398   PMID:22356768   PMID:22361733   PMID:22364861   PMID:22367298   PMID:22367405  
PMID:22406481   PMID:22441934   PMID:22452794   PMID:22489697   PMID:22491513   PMID:22496164   PMID:22496369   PMID:22521434   PMID:22538425   PMID:22538442   PMID:22549865   PMID:22553810  
PMID:22573176   PMID:22575646   PMID:22577164   PMID:22607287   PMID:22623071   PMID:22659744   PMID:22672905   PMID:22673192   PMID:22690848   PMID:22706304   PMID:22740388   PMID:22787154  
PMID:22797724   PMID:22855598   PMID:22901151   PMID:22902906   PMID:22935697   PMID:22943673   PMID:22949650   PMID:22951905   PMID:22963430   PMID:22964638   PMID:23015401   PMID:23016917  
PMID:23019126   PMID:23028944   PMID:23029228   PMID:23054955   PMID:23071680   PMID:23095717   PMID:23128396   PMID:23143601   PMID:23219093   PMID:23221041   PMID:23229819   PMID:23235527  
PMID:23239884   PMID:23243027   PMID:23243311   PMID:23246965   PMID:23250869   PMID:23318911   PMID:23319821   PMID:23324337   PMID:23362460   PMID:23370280   PMID:23376119   PMID:23418554  
PMID:23420876   PMID:23442358   PMID:23463580   PMID:23489692   PMID:23521708   PMID:23528865   PMID:23548208   PMID:23574722   PMID:23589096   PMID:23589370   PMID:23626008   PMID:23658742  
PMID:23665236   PMID:23703390   PMID:23774168   PMID:23831023   PMID:23837456   PMID:23867503   PMID:23904595   PMID:23906991   PMID:23924346   PMID:23924630   PMID:23940783   PMID:23949017  
PMID:24070899   PMID:24092572   PMID:24117128   PMID:24163127   PMID:24177167   PMID:24178677   PMID:24207093   PMID:24213852   PMID:24220032   PMID:24225752   PMID:24225756   PMID:24228118  
PMID:24258200   PMID:24310252   PMID:24314177   PMID:24316488   PMID:24329813   PMID:24350278   PMID:24366874   PMID:24377560   PMID:24394434   PMID:24398967   PMID:24415949   PMID:24418859  
PMID:24449888   PMID:24457968   PMID:24466311   PMID:24488880   PMID:24509874   PMID:24533135   PMID:24554706   PMID:24556685   PMID:24590290   PMID:24594999   PMID:24614722   PMID:24651436  
PMID:24658133   PMID:24662128   PMID:24669837   PMID:24675753   PMID:24690037   PMID:24718831   PMID:24742605   PMID:24746200   PMID:24822180   PMID:24880342   PMID:24893616   PMID:24901051  
PMID:24926492   PMID:24983500   PMID:25045846   PMID:25056472   PMID:25063315   PMID:25085524   PMID:25100342   PMID:25119911   PMID:25130377   PMID:25168241   PMID:25171086   PMID:25189640  
PMID:25218484   PMID:25218545   PMID:25229745   PMID:25241036   PMID:25256005   PMID:25307348   PMID:25313761   PMID:25325303   PMID:25344291   PMID:25376609   PMID:25417702   PMID:25433490  
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PMID:25910754   PMID:25911675   PMID:25929687   PMID:25939713   PMID:25944390   PMID:25946975   PMID:25995450   PMID:26001294   PMID:26013684   PMID:26024393   PMID:26034101   PMID:26068789  
PMID:26071105   PMID:26085095   PMID:26087991   PMID:26096935   PMID:26112605   PMID:26119942   PMID:26180934   PMID:26181203   PMID:26200506   PMID:26202967   PMID:26203771   PMID:26208975  
PMID:26221054   PMID:26223379   PMID:26251276   PMID:26292362   PMID:26318153   PMID:26324887   PMID:26343330   PMID:26406948   PMID:26408908   PMID:26447895   PMID:26456962   PMID:26464669  
PMID:26519559   PMID:26554466   PMID:26638075   PMID:26694167   PMID:26695686   PMID:26696549   PMID:26704768   PMID:26819410   PMID:26825981   PMID:26840455   PMID:26864590   PMID:26871637  
PMID:26878872   PMID:26890356   PMID:26919175   PMID:26995965   PMID:27021569   PMID:27029934   PMID:27036044   PMID:27043336   PMID:27045515   PMID:27060708   PMID:27063419   PMID:27081041  
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PMID:31711519   PMID:31789342   PMID:31794060   PMID:31826234   PMID:31831043   PMID:31903890   PMID:31927310   PMID:31969560   PMID:31978504   PMID:32060133   PMID:32067224   PMID:32128997  
PMID:32168425   PMID:32193335   PMID:32243883   PMID:32276991   PMID:32296183   PMID:32312834   PMID:32350443   PMID:32447427   PMID:32466705   PMID:32476291   PMID:32476798   PMID:32512627  
PMID:32619460   PMID:32661136   PMID:32687624   PMID:32762550   PMID:32764455   PMID:32856845   PMID:32870599   PMID:32873702   PMID:32977822   PMID:32989231   PMID:32993587   PMID:33024031  
PMID:33037932   PMID:33038352   PMID:33056990   PMID:33126320   PMID:33206579   PMID:33263276   PMID:33273057   PMID:33294441   PMID:33369228   PMID:33375680   PMID:33548094   PMID:33579235  
PMID:33619536   PMID:33672023   PMID:33683682   PMID:33764436   PMID:33906487   PMID:33920782   PMID:33961781   PMID:33964467   PMID:33991897   PMID:34272396   PMID:34370013   PMID:34445673  
PMID:34475402  


Genomics

Comparative Map Data
TP63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3189,631,389 - 189,897,276 (+)EnsemblGRCh38hg38GRCh38
GRCh383189,596,746 - 189,897,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373189,314,535 - 189,615,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363190,831,910 - 191,097,759 (+)NCBINCBI36hg18NCBI36
Celera3187,783,803 - 188,042,610 (+)NCBI
Cytogenetic Map3q28NCBI
HuRef3186,752,882 - 187,012,887 (+)NCBIHuRef
CHM1_13189,312,090 - 189,577,623 (+)NCBICHM1_1
Trp63
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391625,502,513 - 25,710,838 (+)NCBIGRCm39mm39
GRCm39 Ensembl1625,502,513 - 25,710,852 (+)Ensembl
GRCm381625,683,763 - 25,892,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1625,683,763 - 25,892,102 (+)EnsemblGRCm38mm10GRCm38
MGSCv371625,683,851 - 25,892,174 (+)NCBIGRCm37mm9NCBIm37
MGSCv361625,717,291 - 25,807,429 (+)NCBImm8
Celera1626,227,614 - 26,435,704 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1617.37NCBI
Tp63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21174,838,858 - 75,049,764 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1174,838,859 - 75,049,398 (-)Ensembl
Rnor_6.01178,234,853 - 78,456,559 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1178,234,800 - 78,456,501 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01182,262,234 - 82,484,354 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,900,622 - 77,200,251 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11176,958,211 - 77,257,840 (-)NCBI
Celera1173,744,494 - 73,953,104 (-)NCBICelera
Cytogenetic Map11q22NCBI
Tp63
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542018,176,155 - 18,384,786 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542018,178,639 - 18,384,786 (-)NCBIChiLan1.0ChiLan1.0
TP63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13195,172,810 - 195,473,085 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3195,199,167 - 195,474,104 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03186,651,879 - 186,918,300 (+)NCBIMhudiblu_PPA_v0panPan3
TP63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13421,766,861 - 21,985,095 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3421,766,496 - 21,983,046 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3425,860,495 - 26,078,655 (+)NCBI
ROS_Cfam_1.03421,700,749 - 21,919,495 (+)NCBI
ROS_Cfam_1.0 Ensembl3421,700,663 - 21,918,660 (+)Ensembl
UMICH_Zoey_3.13421,716,204 - 21,934,749 (+)NCBI
UNSW_CanFamBas_1.03421,710,660 - 21,927,985 (+)NCBI
UU_Cfam_GSD_1.03421,951,749 - 22,170,136 (+)NCBI
Tp63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602114,397,903 - 114,613,831 (-)NCBI
SpeTri2.0NW_004936578492,267 - 705,282 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TP63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13127,116,104 - 127,347,075 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113127,115,990 - 127,347,082 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213136,309,804 - 136,515,766 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TP63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11583,861,489 - 84,126,675 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604157,444,595 - 57,708,553 (+)NCBIVero_WHO_p1.0
Tp63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473067,283,444 - 67,489,808 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D3S2398  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,421,027 - 189,421,299UniSTSGRCh37
Build 363190,903,721 - 190,903,993RGDNCBI36
Celera3187,848,168 - 187,848,456RGD
Cytogenetic Map3q28UniSTS
Cytogenetic Map3q27UniSTS
HuRef3186,817,832 - 186,818,124UniSTS
Marshfield Genetic Map3209.41UniSTS
Marshfield Genetic Map3209.41RGD
deCODE Assembly Map3203.31UniSTS
Stanford-G3 RH Map38312.0UniSTS
Whitehead-RH Map3860.6UniSTS
NCBI RH Map31910.2UniSTS
G33179  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,605,449 - 189,605,634UniSTSGRCh37
Build 363191,088,143 - 191,088,328RGDNCBI36
Celera3188,032,991 - 188,033,176RGD
Cytogenetic Map3q28UniSTS
HuRef3187,003,267 - 187,003,452UniSTS
D3S3422  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,408,175 - 189,408,427UniSTSGRCh37
Build 363190,890,869 - 190,891,121RGDNCBI36
Celera3187,835,313 - 187,835,565RGD
Cytogenetic Map3q28UniSTS
HuRef3186,804,986 - 186,805,238UniSTS
Whitehead-YAC Contig Map3 UniSTS
G59523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,361,589 - 189,361,787UniSTSGRCh37
Build 363190,844,283 - 190,844,481RGDNCBI36
Celera3187,796,189 - 187,796,387RGD
Cytogenetic Map3q28UniSTS
HuRef3186,765,267 - 186,765,465UniSTS
TNG Radiation Hybrid Map3104252.0UniSTS
SHGC-105974  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,357,390 - 189,357,735UniSTSGRCh37
Build 363190,840,084 - 190,840,429RGDNCBI36
Celera3187,791,976 - 187,792,321RGD
Cytogenetic Map3q28UniSTS
HuRef3186,761,056 - 186,761,401UniSTS
TNG Radiation Hybrid Map3104252.0UniSTS
SHGC-146972  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,428,739 - 189,429,049UniSTSGRCh37
Build 363190,911,433 - 190,911,743RGDNCBI36
Celera3187,855,896 - 187,856,206RGD
Cytogenetic Map3q28UniSTS
HuRef3186,825,564 - 186,825,874UniSTS
TNG Radiation Hybrid Map3104272.0UniSTS
PMC25851P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,582,119 - 189,582,201UniSTSGRCh37
Build 363191,064,813 - 191,064,895RGDNCBI36
Celera3188,009,661 - 188,009,743RGD
Cytogenetic Map3q28UniSTS
HuRef3186,979,920 - 186,980,002UniSTS
PMC25851P2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,585,620 - 189,585,704UniSTSGRCh37
Build 363191,068,314 - 191,068,398RGDNCBI36
Celera3188,013,162 - 188,013,246RGD
Cytogenetic Map3q28UniSTS
HuRef3186,983,420 - 186,983,504UniSTS
WI-11062  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,614,786 - 189,614,981UniSTSGRCh37
Build 363191,097,480 - 191,097,675RGDNCBI36
Celera3188,042,328 - 188,042,523RGD
Cytogenetic Map3q28UniSTS
HuRef3187,012,605 - 187,012,800UniSTS
GeneMap99-GB4 RH Map3709.91UniSTS
Whitehead-RH Map3861.7UniSTS
NCBI RH Map31910.2UniSTS
D3S2481  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373189,361,574 - 189,361,787UniSTSGRCh37
Build 363190,844,268 - 190,844,481RGDNCBI36
Celera3187,796,174 - 187,796,387RGD
Cytogenetic Map3q28UniSTS
HuRef3186,765,252 - 186,765,465UniSTS
Whitehead-YAC Contig Map3 UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR203Ahsa-miR-203aMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI18311128
MIR203Ahsa-miR-203aMirtarbaseexternal_infoqRT-PCR//Western blot//Luciferase reporter assayFunctional MTI18483491
MIR203Ahsa-miR-203aOncomiRDBexternal_infoNANA21299870
MIR203Ahsa-miR-203aOncomiRDBexternal_infoNANA18483491
MIR302Bhsa-miR-302b-5pMirecordsexternal_info{changed}NA19342891
MIR92A2hsa-miR-92a-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI19608627

Predicted Target Of
Summary Value
Count of predictions:6312
Count of miRNA genes:1178
Interacting mature miRNAs:1479
Transcripts:ENST00000264731, ENST00000320472, ENST00000354600, ENST00000382063, ENST00000392460, ENST00000392461, ENST00000392463, ENST00000418709, ENST00000434928, ENST00000437221, ENST00000440651, ENST00000449992, ENST00000456148, ENST00000460036, ENST00000486398
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High 1
Medium 8 2 7 116 117 1830 522 7 39 344 82 123 3 1216 1
Low 297 592 372 83 533 40 1536 410 787 53 650 693 50 242 1293 3
Below cutoff 2057 2345 1278 367 1176 367 830 1250 2871 264 423 788 1 1 959 279

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001114978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001114979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001114980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001114981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001114982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB010153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB016072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB016073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB042841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC063939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC078809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF075433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF091627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF116771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH009188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH010181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH013180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ315499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB241431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ202689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ202690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JB741146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF457727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP881229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP881230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP881231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000264731   ⟹   ENSP00000264731
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,631,389 - 189,897,276 (+)Ensembl
RefSeq Acc Id: ENST00000320472   ⟹   ENSP00000317510
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,631,488 - 189,894,702 (+)Ensembl
RefSeq Acc Id: ENST00000354600   ⟹   ENSP00000346614
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,659 - 189,897,276 (+)Ensembl
RefSeq Acc Id: ENST00000392460   ⟹   ENSP00000376253
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,631,516 - 189,894,221 (+)Ensembl
RefSeq Acc Id: ENST00000392461   ⟹   ENSP00000376254
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,801 - 189,894,231 (+)Ensembl
RefSeq Acc Id: ENST00000392463   ⟹   ENSP00000376256
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,801 - 189,894,221 (+)Ensembl
RefSeq Acc Id: ENST00000418709   ⟹   ENSP00000407144
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,631,488 - 189,881,496 (+)Ensembl
RefSeq Acc Id: ENST00000434928   ⟹   ENSP00000401661
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,675 - 189,864,268 (+)Ensembl
RefSeq Acc Id: ENST00000437221   ⟹   ENSP00000392488
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,801 - 189,881,496 (+)Ensembl
RefSeq Acc Id: ENST00000440651   ⟹   ENSP00000394337
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,631,516 - 189,894,502 (+)Ensembl
RefSeq Acc Id: ENST00000449992   ⟹   ENSP00000387839
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,801 - 189,894,502 (+)Ensembl
RefSeq Acc Id: ENST00000456148   ⟹   ENSP00000389485
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,801 - 189,894,502 (+)Ensembl
RefSeq Acc Id: ENST00000460036
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,789,695 - 189,873,575 (+)Ensembl
RefSeq Acc Id: ENST00000486398
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3189,631,416 - 189,738,896 (+)Ensembl
RefSeq Acc Id: NM_001114978   ⟹   NP_001108450
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383189,631,389 - 189,897,276 (+)NCBI
GRCh373189,348,942 - 189,615,068 (+)NCBI
HuRef3186,752,882 - 187,012,887 (+)ENTREZGENE
CHM1_13189,312,090 - 189,577,623 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001114979   ⟹   NP_001108451
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383189,631,389 - 189,881,503 (+)NCBI
GRCh373189,348,942 - 189,615,068 (+)NCBI
HuRef3186,752,882 - 187,012,887 (+)ENTREZGENE
CHM1_13189,312,090 - 189,561,837 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001114980   ⟹   NP_001108452
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383189,789,659 - 189,897,276 (+)NCBI
GRCh373189,348,942 - 189,615,068 (+)NCBI
HuRef3186,752,882 - 187,012,887 (+)ENTREZGENE
CHM1_13189,470,325 - 189,577,623 (+)NCBI
Sequence: