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Gene: RUNX2 (RUNX family transcription factor 2) Sus scrofa

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Symbol:

RUNX2

Name:

RUNX family transcription factor 2

RGD ID:

14191035

Description:

ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); general transcription initiation factor binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN bone mineralization (ortholog); cell maturation (ortholog); cell population proliferation (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Bone Fractures (ortholog); Breast Neoplasms (ortholog); cleidocranial dysplasia (ortholog); FOUND IN chromatin (inferred); cytoplasm (inferred); nucleoplasm (inferred); INTERACTS WITH ammonium chloride; Bisphenol A diglycidyl ether; deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

runt related transcription factor 2; runt-related transcription factor 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	40,106,532 - 40,460,687 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	40,106,581 - 40,353,304 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	46,278,416 - 46,417,291 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bone Fractures (ISO)

Breast Neoplasms (ISO)

cleidocranial dysplasia (ISO)

Cocaine-Related Disorders (ISO)

colorectal cancer (ISO)

congenital hypothyroidism (ISO)

Craniofacial Abnormalities (ISO)

Craniosynostosis Syndrome, Autosomal Recessive (ISO)

esophagus squamous cell carcinoma (ISO)

genetic disease (ISO)

Heterotopic Ossification (ISO)

Hyperoxaluria (ISO)

lung non-small cell carcinoma (ISO)

metaphyseal dysplasia-maxillary hypoplasia-brachydactyly syndrome (ISO)

nephrotic syndrome (ISO)

orofacial cleft 1 (ISO)

osteoarthritis (ISO)

Osteoarthritis, Hip (ISO)

osteosarcoma (ISO)

psoriatic arthritis (ISO)

rheumatoid arthritis (ISO)

Spondylarthritis (ISO)

Stomatognathic System Abnormalities (ISO)

Tooth Abnormalities (ISO)

uremia (ISO)

withdrawal disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

ammonium chloride (EXP)

Bisphenol A diglycidyl ether (EXP)

deoxynivalenol (EXP)

dexamethasone (EXP)

glycerol 2-phosphate (EXP)

L-ascorbic acid (EXP)

warfarin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

BMP signaling pathway (IEA)

bone mineralization (IEA,ISO)

cell maturation (IEA,ISO)

cell population proliferation (IEA,ISO)

cellular response to fibroblast growth factor stimulus (ISO)

cellular response to zinc ion starvation (ISO)

chondrocyte development (IEA,ISO)

chondrocyte differentiation (IEA,ISO)

embryonic cranial skeleton morphogenesis (IEA,ISO)

embryonic forelimb morphogenesis (IEA,ISO)

endochondral ossification (IEA,ISO)

epithelial cell proliferation (IEA,ISO)

gene expression (IEA,ISO)

ligamentous ossification (IEA)

negative regulation of DNA-templated transcription (IEA)

negative regulation of smoothened signaling pathway (IEA,ISO)

odontogenesis of dentin-containing tooth (IEA,ISO)

osteoblast development (IEA,ISO)

osteoblast differentiation (IEA,ISO)

osteoblast fate commitment (IEA,ISO)

positive regulation of cell population proliferation (IEA,ISO)

positive regulation of chondrocyte differentiation (IEA,ISO)

positive regulation of developmental process (IEA)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of epithelial cell proliferation (IEA,ISO)

positive regulation of gene expression (IEA,ISO)

positive regulation of ossification (ISO)

positive regulation of osteoblast differentiation (IEA,ISO)

positive regulation of stem cell proliferation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of fibroblast growth factor receptor signaling pathway (IEA,ISO)

regulation of gene expression (IEA,ISO)

regulation of odontogenesis of dentin-containing tooth (IEA,ISO)

regulation of ossification (IEA,ISO)

regulation of osteoblast differentiation (IEA,ISO)

response to insulin (ISO)

response to sodium phosphate (IEA)

skeletal system development (IEA,ISO)

skeletal system morphogenesis (IEA,ISO)

SMAD protein signal transduction (IEA)

smoothened signaling pathway (IEA,ISO)

stem cell differentiation (IEA,ISO)

stem cell proliferation (IEA,ISO)

T cell differentiation (IEA,ISO)

Cellular Component

chromatin (IEA)

cytoplasm (IEA)

nucleoplasm (IEA)

nucleus (IEA)

transcription regulator complex (IEA)

Molecular Function

ATP binding (IEA)

bHLH transcription factor binding (IEA)

chromatin binding (IEA)

chromatin DNA binding (IEA)

cis-regulatory region sequence-specific DNA binding (IEA)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor binding (IEA,ISO)

general transcription initiation factor binding (ISO)

histone deacetylase binding (ISO)

protein binding (ISO)

protein domain specific binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

transcription factor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

fibroblast growth factor signaling pathway (ISO)

transforming growth factor-beta Smad dependent signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:27242197	PMID:30032202

Genomics

Comparative Map Data

RUNX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	40,106,532 - 40,460,687 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	40,106,581 - 40,353,304 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	46,278,416 - 46,417,291 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RUNX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	45,328,330 - 45,551,082 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	45,328,157 - 45,664,349 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	45,296,067 - 45,518,819 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	45,404,032 - 45,626,797 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	45,498,291 - 45,623,020	NCBI
Celera	6	46,849,063 - 47,071,816 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	45,018,738 - 45,241,794 (+)	NCBI		HuRef
CHM1_1	6	45,298,649 - 45,521,390 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	45,163,134 - 45,385,899 (+)	NCBI		T2T-CHM13v2.0

Runx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	44,806,873 - 45,125,518 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	44,806,874 - 45,125,684 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	44,495,987 - 44,814,797 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	44,495,987 - 44,814,797 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	44,740,950 - 44,951,746 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	44,067,056 - 44,277,682 (-)	NCBI		MGSCv36	mm8
Celera	17	48,040,272 - 48,252,046 (-)	NCBI		Celera
Cytogenetic Map	17	B3	NCBI
cM Map	17	21.33	NCBI

Runx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	23,661,278 - 23,990,248 (+)	NCBI		GRCr8
mRatBN7.2	9	16,167,504 - 16,492,826 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	16,167,482 - 16,492,167 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,761,163 - 24,969,039 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,823,843 - 30,032,066 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	28,124,579 - 28,332,468 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	18,564,743 - 18,773,092 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	18,564,927 - 18,773,092 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	17,448,142 - 17,658,373 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,869,234 - 12,025,219 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	11,867,896 - 11,943,304 (+)	NCBI
Celera	9	13,904,221 - 14,111,920 (+)	NCBI		Celera
Cytogenetic Map	9	q13	NCBI

Runx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	10,598,145 - 10,800,560 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	10,598,145 - 10,885,858 (+)	NCBI	ChiLan1.0	ChiLan1.0

RUNX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	59,818,489 - 60,045,725 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	55,684,505 - 55,911,773 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	45,003,962 - 45,133,148 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	46,189,426 - 46,411,889 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	46,189,432 - 46,524,389 (+)	Ensembl	panpan1.1		panPan2

RUNX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	13,723,535 - 13,842,565 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	13,628,539 - 13,840,785 (+)	NCBI	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	12	13,628,539 - 13,840,785 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	13,657,403 - 13,875,716 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	14,116,775 - 14,343,464 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	14,117,254 - 14,450,732 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	13,641,535 - 13,967,483 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	13,729,537 - 14,055,648 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	13,825,170 - 14,151,515 (+)	NCBI		UU_Cfam_GSD_1.0

Runx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	49,141,956 - 49,373,718 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	14,695,965 - 14,905,157 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	14,695,965 - 14,818,246 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RUNX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	26,679,386 - 26,807,812 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	26,683,175 - 26,807,319 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	45,423,449 - 45,552,140 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Runx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	14,679,974 - 14,867,729 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	14,601,574 - 14,868,469 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RUNX2
6000 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	22	3	2	5	14	12	22	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003482203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005666073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005666074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR956396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR974587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU668154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01125293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000001910 ⟹ ENSSSCP00000001863

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,205,455 - 40,316,707 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000044704 ⟹ ENSSSCP00000040420

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,106,513 - 40,347,474 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000053493 ⟹ ENSSSCP00000032242

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,106,532 - 40,353,299 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000059192 ⟹ ENSSSCP00000050807

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,106,644 - 40,353,300 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000083673 ⟹ ENSSSCP00000073388

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,106,532 - 40,460,687 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000088700 ⟹ ENSSSCP00000067616

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,106,685 - 40,112,774 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000089878 ⟹ ENSSSCP00000070509

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,106,513 - 40,353,299 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000090875 ⟹ ENSSSCP00000068961

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	40,205,455 - 40,326,045 (+)	Ensembl

RefSeq Acc Id:

XM_003482203 ⟹ XP_003482251

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	40,106,581 - 40,353,304 (+)	NCBI

Sequence:

show sequence

TGACTGTGAGTACTGTGAGGTCACAAACCACATGATTCTGTCTCTCCAGTAATAGTGCTTGCAA
AAAAAGGAGTTTTAAAGCTTTTGCTTTTTTGGATTGTGTGAATGCTTCATTCGCCTCACAAACA
ACCACAGAACCACAAGTGCGGTGCAAACTTTCTCCAGGAGGACAGCAAGAAGTCTCTGGTTTTT
AAATGGTTAATCTCCGCAGGTCACTACCAGCCACCGAGACCAACAGAGGCATTTAAGGCTGCAA
GCAGAATTTACAACAGAGGGTACAAGTTCTATCTGAAAAAAAAAGGAGGGACTATGGCATCAAA
CAGCCTCTTCAGCACAGTGACACCATGTCAGCAAAACTTCTTTTGGGATCCGAGCACCAGCCGG
CGCTTCAGCCCCCCCTCCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGAGCCCGGTGGTGG
CTGCGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCA
GCAGCAGGAGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCCGCCGTG
CCCCGGTTGCGGCCGCCGCACGACAACCGCACCATGGTGGAGATCATCGCTGACCACCCGGCCG
AACTCGTCCGCACCGACAGCCCCAACTTCCTGTGCTCTGTGCTGCCCTCGCACTGGCGTTGCAA
CAAGACCCTGCCCGTGGCCTTCAAGGTGGTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT
ACTGTCATGGCGGGTAACGATGAAAATTATTCTGCTGAGCTCCGAAATGCCTCTGCTGTTATGA
AAAACCAAGTAGCAAGGTTCAACGATCTGAGATTTGTGGGCCGGAGTGGACGAGGCAAGAGTTT
CACCTTGACGATAACTGTCTTCACAAATCCTCCGCAAGTAGCCACCTACCACAGAGCTATTAAA
GTTACCGTGGATGGACCCCGAGAGCCCAGAAGGCACAGACAGAAGCTTGATGACTCTAAACCTA
GTTTGTTCTCTGACCGCCTCAGTGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGTAGGTGT
CCCGCCTCAGAACCCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAG
AGTCAGATTACAGACCCCAGGCAGGCGCAGTCTTCCCCGCCGTGGTCCTATGACCAGTCGTATC
CCTCCTACTTGAGCCAGATGACGTCCCCATCCATCCACTCCACCACCCCGCTGTCCTCCACACG
GGGCACCGGGCTTCCTGCCATCACCGACGTGCCCAGGCGCATTTCAGATGATGACACTGCCACC
TCTGACTTCTGCCTCTGGCCTTCCACTCTCAGTAAGAAAAGCCAGGCAGGTGCTTCAGAACTGG
GCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTCATCCCTCACTGAGAGCCGCTTCTCCAA
CCCACGAATGCACTACCCAGCCACCTTTACTTACACCCCGCCAGTCACCTCAGGCATGTCCCTC
GGTATGTCCGCCACCACCCACTACCACACCTACCTGCCACCACCCTACCCGGGCTCTTCCCAAA
GCCAGAGCGGACCCTTCCAGACCAGCAGCACTCCATACCTCTACTATGGCACCTCGTCAGGACC
CTATCAGTTCCCCATGGTGCCCGGGGGAGACCGGTCTCCTTCCAGAATGCTACCGCCCTGCACC
ACCACCTCGAACGGCAGCACGCTATTAAATCCAAATTTGCCTAACCAGAATGATGGCGTTGACG
CTGATGGAAGCCACAGCAGTTCCCCAACCGTTTTGAATTCTAGTGGCAGAATGGATGAATCCGT
TTGGCGACCCTATTGAAATGTCCTCAGCCATGGCTCAGCGGTGTCTGGGGAGGTGGGGCGGGGT
GGGGGGCACATCCCAAATGGATCAACCTATACGTATAGAGAGAGAGTGCATATATATATATATA
TATAATACATATATATATATATATGTTATCAACTCGCTCTCTGCCAAGTGCCTATTTTTTAGAT
TTTTTTTTTTGCATTCACTCTGTCATAATCTTGCAACCGGAAGAGGGTAGCTCTTGAGAAGCCA
GAAGCCCTAGAGAGACAGAGACGATCCTGATCAGGTTTCAGATCGTCTCCTAGTTAACATGTAC
TTGTACCAACAAACACAGGAGAAAAGGTATCTGTTGCTGTTGGTGTTTGGTCCGTTATCCTAAA
TAACCTGTTCACGTGCCGGTTCGGAGAGGTGGACTTTAAGGTCAGGAGGAAGAAGAGCACAGCT
GCTTCCTCCCTGTGCTTTGAAACCACGCCTGCCCCCCCACCCTGCCCCCCAGTCGGTGGCAGCT
TCGAGGTGGCCCCCACTGCCTCCGGCAGACCCGCTTACAAGGCCAGGTGCACGCAGAGGAAAAA
GGAGGCGGAGCCGATGCTGCCATCCATTCAGAGTAACCTTTGCTTTCCCGCTCTCTGCAAGCAT
TCATTCATCCCAACTGTTCGGTTCAGTTTTCAGCTGTTTCCCCCCCACCCACCCCTCCCTTTCA
GAAAGTGGCTTCAAAAATACTGATCGGGATAGGTTTTTATTTTACTTTTTTATACCCTTTTTTT
TTAACCCCTTTTCCCATTTAACCCAAAAGAAATCCCCTCCCGAACGCCTCCCCCCTCCTCCTCC
TTGTATGCAAAACTGAAAATGGCAATACCTTATTATAGCCATAATGGTATATAGATAGTGTTTG
CGTTTGGCTGTGTGTTATTTGTCTTCTTTTTTTTTTAAATTATGAATATGTGTAAAATCTGAGG
TAACTTGCTAACGTGAATGGTCATATAACTTTAAAGATATATTTATAATTATTTAATGACATTT
GGACCCTTGAAACATTTCTTAGTGTATTGATGTGTTGACTTCGGTCTCTAAAAGTGCTCTTTAT
TAAATAACAAATTTCTTCCGTGGGCTAGAGCCATATCTGAAATATTGCTAAGCAATTTCAGTTC
ATCCAGGCACAATGTGATTTTTAAAAAATACTTCCACCTCCAAATATTTTAGATGTAGCTTGTT
TTTGCGATGTATGAAGGAAATGTTATGTTTAGGTCTTTCAGCTCTTTGATTGCCTCTAACCCAG
CTTTGCCTTTTCAAAAGCAATCATTAGAGATTAAAAACAAAAACAAAAACAAAACCCAACTCTT
AGTCCTTTATCACTTATGTGGCCCTTTATCAGCATGAAATGCTGGGGTGATGTGGTTTCCTAAT
TTCTTTGAAATAATGATGACTTTTGTCATATTAAAAAGACAAGCACAAGTGAATCATTGAACTG
CAGACTGATGCTCTGTGGTTTCATAGTTCAAGCAAACCTCTAAAGCGCCAGGCTTCATAGTGAA
AATGTAGTCGGCTTAAAGCCACGCATGTGGCTAAAGGATCAATCATGATACACCTAGTACAGGA
ACGTAAAACTGCACTGGGGGAGTCTTGCCCAACCCGCCTTACCAAACTGCAAGTCAGGGGAACC
CAAGTCTGCCTGGGGCCCCTGGCAGCTCTCCACAGAATTTGCATTTAAAGGAGCAGAATTGAGT
CATTGTCTCACGGAAGCAGGGTCACCTTAAGGAGCAGGCAGGTCCCAGCAGGCAGCTGATCTGA
GCACCTACGGGCTGCGGGGACCCATAGACACCCTTGGATGTCCGTATTTCTCACAGTGGCGGGT
GGCAGGAAGGCAAGGCCAGGTGGAGTTTGATGTCTACTACTGCATGTGAACTTGAGCCGAAGCC
CTCCTGTCGGATGCACTTTGACCCCTCCTGGCGGCCACACAGCAAATTCTCCAGTGTGAATCCT
TAATCCAAGCCAGGACCACTTCGTGACACCACTGGGCAGACCCTCCCCCACAGGTCAAGGCCTC
TTCATTAGAATTCTGTGCCCCCTACCCCGAGCAGAACCTTACAGAGATCTGCCTCCAGCTCCCA
GAGGCCCCTTCCTTGCTCCCTAGTACTCCTTCAGCTCACTTCATAGGCCACCAGGCACCTCCAG
GCAGCCTTGTGGGGGCACTGGACCTGTGCTATTCGCCTGGGAATTCACCCTGACGCCTCCTAAT
AAAAATCAAGGGGGAAAAAACCAAAGCAAACCAAAACACTTTGCCTTCTAAAGGTTGTATACCA
AGTATGCTTAGATAAAATAAGCCACTTTTCTATTATAAGATGGAAATAGTCATTGATACTATTT
ATTGTTGTGTGTGGTAGCTTGAAGCACGCCACTGTCCATTTATTTGTAAGTGTAAAAATATGTG
TTTGTTTAAGCCGCACTTAAAAAAGCCAGTGTCTGGTTTACACATTTCAATCCTAGGTCATTGA
CATAAAAACGTTATCACCAGTGCTAGCTGTATGTGCCCTATTTAATAAAAGAGGTACTATAGCT
GTACATTCTTTTTTTTTTTTTAATGTTGAAAGGGCTTTTTTAAGTTTACAGGACACATACTAAG
TGACTTGAGGGATTTTTTTGTGTGTTGAAATGTTACTATAGTGGCTGCAGGCAGCAACCCAGAA
ACACTTTAAAAGTTTTATTTTCTTGGGAAAAATTCAAGCACTTCTTCCTTCTCCCCTCACTCCA
ACCACTCCAGTGGGATAATTTACCTTTCTTAGAGCAAATTCTGCCCCTTTTTACCCTGAGGGTT
ACGTTTTTCTTCTATCTTTTTTTTTTTTTTTAAACCGAATTCTTACTGTGCACTGGGTCGTGTG
TATGATTTGTGATTTCAAGACCAAAGCAAAAGCTTTCTGCTACTGTAGAACTCTGAACTAGCCA
ACACGCCACTTCCTGCAGGTGAAAATGGCTTGGTTTCCAGTGTGATCAATCCAGCCACTTTTGA
AACCTGCTGGAACCGATGTCAGAGTCCCAGAACAGGTACCAAAGCTGTAGTGTTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTAATGGCACCCAGCTTGCCAGCTTGGAACTGAAAGACTCC
ACAAGTCAGCTGTGGTTCGCTCTTTTTGTCTTACCACCCCACCCCCCAGGGCCTTTTAAAAAAG
TGAGCAGAGAATTCCACACCCTTAGGGACCATCCAAGGCAAGTGCCGAGGGAGGAGCTGTGTGT
CCTGGTGTATCGTTGCGTCCGTTCCCAGGAAAGGGACTGACTCAGAGTCTAGGTTAATACGTGG
AAACACAAGCATTAGCAAAAACAATCATTATACCGATGACATTCGGAAGAACCACAATAAATAA
AAGATGACTCCTCCAGACCTTGAATTTGTTGTTCTTAAAAAGATAATGCATTTCAAAAATATTT
TCTATGTGAGAACTTTTTAGATGTTTGTTTACTTCATGTTTACAAATAACTGTTTGCTTTTCAT
GCAGTACTTTGAAATATATCAGCCAGAACCATAACTTACAGTAATTTCTTAGGTATTCTGAATA
AAATTCCATTTTTTTTTTCTGGATATGCTTTACCATTCTTAGATTTCTGTGGAACAAAAATATT
TGTAGCATTTTGTGTAAATACGAGCTTTTCATTTTAATTTTTACCCCCCCCATTGCTGTTGCCC
AAGATTTGCTTTCCGTGCACATATTGTACAAATTCTGCTTTGTGCCACAGGTCATGACTGTGGA
TGAGTTTACTCTTAACTTCAAAGGGACTATTTGTATTGTATGTCGCAACTGTAAATTGAATTAT
TTGGCATTTTTTTCTCATGACTGTAATATTAATTTGAAGTTTGAATTTAATTGTCAATAAAATG
GCTTTTTTGGTTTTGTTA

hide sequence

RefSeq Acc Id:

XM_005666073 ⟹ XP_005666130

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	40,106,581 - 40,353,304 (+)	NCBI

Sequence:

show sequence

TGACTGTGAGTACTGTGAGGTCACAAACCACATGATTCTGTCTCTCCAGTAATAGTGCTTGCAA
AAAAAGGAGTTTTAAAGCTTTTGCTTTTTTGGATTGTGTGAATGCTTCATTCGCCTCACAAACA
ACCACAGAACCACAAGTGCGGTGCAAACTTTCTCCAGGAGGACAGCAAGAAGTCTCTGGTTTTT
AAATGGTTAATCTCCGCAGGTCACTACCAGCCACCGAGACCAACAGAGGCATTTAAGGCTGCAA
GCAGAATTTACAACAGAGGGTACAAGTTCTATCTGAAAAAAAAAGGAGGGACTATGGCATCAAA
CAGCCTCTTCAGCACAGTGACACCATGTCAGCAAAACTTCTTTTGGGATCCGAGCACCAGCCGG
CGCTTCAGCCCCCCCTCCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGAGCCCGGTGGTGG
CTGCGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCA
GCAGCAGGAGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCCGCCGTG
CCCCGGTTGCGGCCGCCGCACGACAACCGCACCATGGTGGAGATCATCGCTGACCACCCGGCCG
AACTCGTCCGCACCGACAGCCCCAACTTCCTGTGCTCTGTGCTGCCCTCGCACTGGCGTTGCAA
CAAGACCCTGCCCGTGGCCTTCAAGGTGGTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT
ACTGTCATGGCGGGTAACGATGAAAATTATTCTGCTGAGCTCCGAAATGCCTCTGCTGTTATGA
AAAACCAAGTAGCAAGGTTCAACGATCTGAGATTTGTGGGCCGGAGTGGACGAGGCAAGAGTTT
CACCTTGACGATAACTGTCTTCACAAATCCTCCGCAAGTAGCCACCTACCACAGAGCTATTAAA
GTTACCGTGGATGGACCCCGAGAGCCCAGAAGGCACAGACAGAAGCTTGATGACTCTAAACCTA
GTTTGTTCTCTGACCGCCTCAGTGATTTAGGGCGCATTCCTCATCCCAGTATGAGAGTAGGTGT
CCCGCCTCAGAACCCACGGCCCTCCCTGAACTCTGCACCAAGTCCTTTTAATCCACAAGGACAG
AGTCAGATTACAGACCCCAGGCAGGCGCAGTCTTCCCCGCCGTGGTCCTATGACCAGTCGTATC
CCTCCTACTTGAGCCAGATGACGTCCCCATCCATCCACTCCACCACCCCGCTGTCCTCCACACG
GGGCACCGGGCTTCCTGCCATCACCGACGTGCCCAGGCGCATTTCAGGTGCTTCAGAACTGGGC
CCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTCATCCCTCACTGAGAGCCGCTTCTCCAACC
CACGAATGCACTACCCAGCCACCTTTACTTACACCCCGCCAGTCACCTCAGGCATGTCCCTCGG
TATGTCCGCCACCACCCACTACCACACCTACCTGCCACCACCCTACCCGGGCTCTTCCCAAAGC
CAGAGCGGACCCTTCCAGACCAGCAGCACTCCATACCTCTACTATGGCACCTCGTCAGGACCCT
ATCAGTTCCCCATGGTGCCCGGGGGAGACCGGTCTCCTTCCAGAATGCTACCGCCCTGCACCAC
CACCTCGAACGGCAGCACGCTATTAAATCCAAATTTGCCTAACCAGAATGATGGCGTTGACGCT
GATGGAAGCCACAGCAGTTCCCCAACCGTTTTGAATTCTAGTGGCAGAATGGATGAATCCGTTT
GGCGACCCTATTGAAATGTCCTCAGCCATGGCTCAGCGGTGTCTGGGGAGGTGGGGCGGGGTGG
GGGGCACATCCCAAATGGATCAACCTATACGTATAGAGAGAGAGTGCATATATATATATATATA
TAATACATATATATATATATATGTTATCAACTCGCTCTCTGCCAAGTGCCTATTTTTTAGATTT
TTTTTTTTGCATTCACTCTGTCATAATCTTGCAACCGGAAGAGGGTAGCTCTTGAGAAGCCAGA
AGCCCTAGAGAGACAGAGACGATCCTGATCAGGTTTCAGATCGTCTCCTAGTTAACATGTACTT
GTACCAACAAACACAGGAGAAAAGGTATCTGTTGCTGTTGGTGTTTGGTCCGTTATCCTAAATA
ACCTGTTCACGTGCCGGTTCGGAGAGGTGGACTTTAAGGTCAGGAGGAAGAAGAGCACAGCTGC
TTCCTCCCTGTGCTTTGAAACCACGCCTGCCCCCCCACCCTGCCCCCCAGTCGGTGGCAGCTTC
GAGGTGGCCCCCACTGCCTCCGGCAGACCCGCTTACAAGGCCAGGTGCACGCAGAGGAAAAAGG
AGGCGGAGCCGATGCTGCCATCCATTCAGAGTAACCTTTGCTTTCCCGCTCTCTGCAAGCATTC
ATTCATCCCAACTGTTCGGTTCAGTTTTCAGCTGTTTCCCCCCCACCCACCCCTCCCTTTCAGA
AAGTGGCTTCAAAAATACTGATCGGGATAGGTTTTTATTTTACTTTTTTATACCCTTTTTTTTT
AACCCCTTTTCCCATTTAACCCAAAAGAAATCCCCTCCCGAACGCCTCCCCCCTCCTCCTCCTT
GTATGCAAAACTGAAAATGGCAATACCTTATTATAGCCATAATGGTATATAGATAGTGTTTGCG
TTTGGCTGTGTGTTATTTGTCTTCTTTTTTTTTTAAATTATGAATATGTGTAAAATCTGAGGTA
ACTTGCTAACGTGAATGGTCATATAACTTTAAAGATATATTTATAATTATTTAATGACATTTGG
ACCCTTGAAACATTTCTTAGTGTATTGATGTGTTGACTTCGGTCTCTAAAAGTGCTCTTTATTA
AATAACAAATTTCTTCCGTGGGCTAGAGCCATATCTGAAATATTGCTAAGCAATTTCAGTTCAT
CCAGGCACAATGTGATTTTTAAAAAATACTTCCACCTCCAAATATTTTAGATGTAGCTTGTTTT
TGCGATGTATGAAGGAAATGTTATGTTTAGGTCTTTCAGCTCTTTGATTGCCTCTAACCCAGCT
TTGCCTTTTCAAAAGCAATCATTAGAGATTAAAAACAAAAACAAAAACAAAACCCAACTCTTAG
TCCTTTATCACTTATGTGGCCCTTTATCAGCATGAAATGCTGGGGTGATGTGGTTTCCTAATTT
CTTTGAAATAATGATGACTTTTGTCATATTAAAAAGACAAGCACAAGTGAATCATTGAACTGCA
GACTGATGCTCTGTGGTTTCATAGTTCAAGCAAACCTCTAAAGCGCCAGGCTTCATAGTGAAAA
TGTAGTCGGCTTAAAGCCACGCATGTGGCTAAAGGATCAATCATGATACACCTAGTACAGGAAC
GTAAAACTGCACTGGGGGAGTCTTGCCCAACCCGCCTTACCAAACTGCAAGTCAGGGGAACCCA
AGTCTGCCTGGGGCCCCTGGCAGCTCTCCACAGAATTTGCATTTAAAGGAGCAGAATTGAGTCA
TTGTCTCACGGAAGCAGGGTCACCTTAAGGAGCAGGCAGGTCCCAGCAGGCAGCTGATCTGAGC
ACCTACGGGCTGCGGGGACCCATAGACACCCTTGGATGTCCGTATTTCTCACAGTGGCGGGTGG
CAGGAAGGCAAGGCCAGGTGGAGTTTGATGTCTACTACTGCATGTGAACTTGAGCCGAAGCCCT
CCTGTCGGATGCACTTTGACCCCTCCTGGCGGCCACACAGCAAATTCTCCAGTGTGAATCCTTA
ATCCAAGCCAGGACCACTTCGTGACACCACTGGGCAGACCCTCCCCCACAGGTCAAGGCCTCTT
CATTAGAATTCTGTGCCCCCTACCCCGAGCAGAACCTTACAGAGATCTGCCTCCAGCTCCCAGA
GGCCCCTTCCTTGCTCCCTAGTACTCCTTCAGCTCACTTCATAGGCCACCAGGCACCTCCAGGC
AGCCTTGTGGGGGCACTGGACCTGTGCTATTCGCCTGGGAATTCACCCTGACGCCTCCTAATAA
AAATCAAGGGGGAAAAAACCAAAGCAAACCAAAACACTTTGCCTTCTAAAGGTTGTATACCAAG
TATGCTTAGATAAAATAAGCCACTTTTCTATTATAAGATGGAAATAGTCATTGATACTATTTAT
TGTTGTGTGTGGTAGCTTGAAGCACGCCACTGTCCATTTATTTGTAAGTGTAAAAATATGTGTT
TGTTTAAGCCGCACTTAAAAAAGCCAGTGTCTGGTTTACACATTTCAATCCTAGGTCATTGACA
TAAAAACGTTATCACCAGTGCTAGCTGTATGTGCCCTATTTAATAAAAGAGGTACTATAGCTGT
ACATTCTTTTTTTTTTTTTAATGTTGAAAGGGCTTTTTTAAGTTTACAGGACACATACTAAGTG
ACTTGAGGGATTTTTTTGTGTGTTGAAATGTTACTATAGTGGCTGCAGGCAGCAACCCAGAAAC
ACTTTAAAAGTTTTATTTTCTTGGGAAAAATTCAAGCACTTCTTCCTTCTCCCCTCACTCCAAC
CACTCCAGTGGGATAATTTACCTTTCTTAGAGCAAATTCTGCCCCTTTTTACCCTGAGGGTTAC
GTTTTTCTTCTATCTTTTTTTTTTTTTTTAAACCGAATTCTTACTGTGCACTGGGTCGTGTGTA
TGATTTGTGATTTCAAGACCAAAGCAAAAGCTTTCTGCTACTGTAGAACTCTGAACTAGCCAAC
ACGCCACTTCCTGCAGGTGAAAATGGCTTGGTTTCCAGTGTGATCAATCCAGCCACTTTTGAAA
CCTGCTGGAACCGATGTCAGAGTCCCAGAACAGGTACCAAAGCTGTAGTGTTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTAATGGCACCCAGCTTGCCAGCTTGGAACTGAAAGACTCCAC
AAGTCAGCTGTGGTTCGCTCTTTTTGTCTTACCACCCCACCCCCCAGGGCCTTTTAAAAAAGTG
AGCAGAGAATTCCACACCCTTAGGGACCATCCAAGGCAAGTGCCGAGGGAGGAGCTGTGTGTCC
TGGTGTATCGTTGCGTCCGTTCCCAGGAAAGGGACTGACTCAGAGTCTAGGTTAATACGTGGAA
ACACAAGCATTAGCAAAAACAATCATTATACCGATGACATTCGGAAGAACCACAATAAATAAAA
GATGACTCCTCCAGACCTTGAATTTGTTGTTCTTAAAAAGATAATGCATTTCAAAAATATTTTC
TATGTGAGAACTTTTTAGATGTTTGTTTACTTCATGTTTACAAATAACTGTTTGCTTTTCATGC
AGTACTTTGAAATATATCAGCCAGAACCATAACTTACAGTAATTTCTTAGGTATTCTGAATAAA
ATTCCATTTTTTTTTTCTGGATATGCTTTACCATTCTTAGATTTCTGTGGAACAAAAATATTTG
TAGCATTTTGTGTAAATACGAGCTTTTCATTTTAATTTTTACCCCCCCCATTGCTGTTGCCCAA
GATTTGCTTTCCGTGCACATATTGTACAAATTCTGCTTTGTGCCACAGGTCATGACTGTGGATG
AGTTTACTCTTAACTTCAAAGGGACTATTTGTATTGTATGTCGCAACTGTAAATTGAATTATTT
GGCATTTTTTTCTCATGACTGTAATATTAATTTGAAGTTTGAATTTAATTGTCAATAAAATGGC
TTTTTTGGTTTTGTTA

hide sequence

RefSeq Acc Id:

XM_005666074 ⟹ XP_005666131

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	40,106,581 - 40,353,304 (+)	NCBI

Sequence:

show sequence

TGACTGTGAGTACTGTGAGGTCACAAACCACATGATTCTGTCTCTCCAGTAATAGTGCTTGCAA
AAAAAGGAGTTTTAAAGCTTTTGCTTTTTTGGATTGTGTGAATGCTTCATTCGCCTCACAAACA
ACCACAGAACCACAAGTGCGGTGCAAACTTTCTCCAGGAGGACAGCAAGAAGTCTCTGGTTTTT
AAATGGTTAATCTCCGCAGGTCACTACCAGCCACCGAGACCAACAGAGGCATTTAAGGCTGCAA
GCAGAATTTACAACAGAGGGTACAAGTTCTATCTGAAAAAAAAAGGAGGGACTATGGCATCAAA
CAGCCTCTTCAGCACAGTGACACCATGTCAGCAAAACTTCTTTTGGGATCCGAGCACCAGCCGG
CGCTTCAGCCCCCCCTCCAGCAGCCTGCAGCCCGGCAAGATGAGCGACGTGAGCCCGGTGGTGG
CTGCGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCA
GCAGCAGGAGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCCGCCGTG
CCCCGGTTGCGGCCGCCGCACGACAACCGCACCATGGTGGAGATCATCGCTGACCACCCGGCCG
AACTCGTCCGCACCGACAGCCCCAACTTCCTGTGCTCTGTGCTGCCCTCGCACTGGCGTTGCAA
CAAGACCCTGCCCGTGGCCTTCAAGGTGGTAGCCCTCGGAGAGGTACCAGATGGGACTGTGGTT
ACTGTCATGGCGGGTAACGATGAAAATTATTCTGCTGAGCTCCGAAATGCCTCTGCTGTTATGA
AAAACCAAGTAGCAAGGTTCAACGATCTGAGATTTGTGGGCCGGAGTGGACGAGGCAAGAGTTT
CACCTTGACGATAACTGTCTTCACAAATCCTCCGCAAGTAGCCACCTACCACAGAGCTATTAAA
GTTACCGTGGATGGACCCCGAGAGCCCAGAAACCCCAGGCAGGCGCAGTCTTCCCCGCCGTGGT
CCTATGACCAGTCGTATCCCTCCTACTTGAGCCAGATGACGTCCCCATCCATCCACTCCACCAC
CCCGCTGTCCTCCACACGGGGCACCGGGCTTCCTGCCATCACCGACGTGCCCAGGCGCATTTCA
GATGATGACACTGCCACCTCTGACTTCTGCCTCTGGCCTTCCACTCTCAGTAAGAAAAGCCAGG
CAGGTGCTTCAGAACTGGGCCCTTTTTCAGACCCCAGGCAGTTCCCAAGCATTTCATCCCTCAC
TGAGAGCCGCTTCTCCAACCCACGAATGCACTACCCAGCCACCTTTACTTACACCCCGCCAGTC
ACCTCAGGCATGTCCCTCGGTATGTCCGCCACCACCCACTACCACACCTACCTGCCACCACCCT
ACCCGGGCTCTTCCCAAAGCCAGAGCGGACCCTTCCAGACCAGCAGCACTCCATACCTCTACTA
TGGCACCTCGTCAGGACCCTATCAGTTCCCCATGGTGCCCGGGGGAGACCGGTCTCCTTCCAGA
ATGCTACCGCCCTGCACCACCACCTCGAACGGCAGCACGCTATTAAATCCAAATTTGCCTAACC
AGAATGATGGCGTTGACGCTGATGGAAGCCACAGCAGTTCCCCAACCGTTTTGAATTCTAGTGG
CAGAATGGATGAATCCGTTTGGCGACCCTATTGAAATGTCCTCAGCCATGGCTCAGCGGTGTCT
GGGGAGGTGGGGCGGGGTGGGGGGCACATCCCAAATGGATCAACCTATACGTATAGAGAGAGAG
TGCATATATATATATATATATAATACATATATATATATATATGTTATCAACTCGCTCTCTGCCA
AGTGCCTATTTTTTAGATTTTTTTTTTTGCATTCACTCTGTCATAATCTTGCAACCGGAAGAGG
GTAGCTCTTGAGAAGCCAGAAGCCCTAGAGAGACAGAGACGATCCTGATCAGGTTTCAGATCGT
CTCCTAGTTAACATGTACTTGTACCAACAAACACAGGAGAAAAGGTATCTGTTGCTGTTGGTGT
TTGGTCCGTTATCCTAAATAACCTGTTCACGTGCCGGTTCGGAGAGGTGGACTTTAAGGTCAGG
AGGAAGAAGAGCACAGCTGCTTCCTCCCTGTGCTTTGAAACCACGCCTGCCCCCCCACCCTGCC
CCCCAGTCGGTGGCAGCTTCGAGGTGGCCCCCACTGCCTCCGGCAGACCCGCTTACAAGGCCAG
GTGCACGCAGAGGAAAAAGGAGGCGGAGCCGATGCTGCCATCCATTCAGAGTAACCTTTGCTTT
CCCGCTCTCTGCAAGCATTCATTCATCCCAACTGTTCGGTTCAGTTTTCAGCTGTTTCCCCCCC
ACCCACCCCTCCCTTTCAGAAAGTGGCTTCAAAAATACTGATCGGGATAGGTTTTTATTTTACT
TTTTTATACCCTTTTTTTTTAACCCCTTTTCCCATTTAACCCAAAAGAAATCCCCTCCCGAACG
CCTCCCCCCTCCTCCTCCTTGTATGCAAAACTGAAAATGGCAATACCTTATTATAGCCATAATG
GTATATAGATAGTGTTTGCGTTTGGCTGTGTGTTATTTGTCTTCTTTTTTTTTTAAATTATGAA
TATGTGTAAAATCTGAGGTAACTTGCTAACGTGAATGGTCATATAACTTTAAAGATATATTTAT
AATTATTTAATGACATTTGGACCCTTGAAACATTTCTTAGTGTATTGATGTGTTGACTTCGGTC
TCTAAAAGTGCTCTTTATTAAATAACAAATTTCTTCCGTGGGCTAGAGCCATATCTGAAATATT
GCTAAGCAATTTCAGTTCATCCAGGCACAATGTGATTTTTAAAAAATACTTCCACCTCCAAATA
TTTTAGATGTAGCTTGTTTTTGCGATGTATGAAGGAAATGTTATGTTTAGGTCTTTCAGCTCTT
TGATTGCCTCTAACCCAGCTTTGCCTTTTCAAAAGCAATCATTAGAGATTAAAAACAAAAACAA
AAACAAAACCCAACTCTTAGTCCTTTATCACTTATGTGGCCCTTTATCAGCATGAAATGCTGGG
GTGATGTGGTTTCCTAATTTCTTTGAAATAATGATGACTTTTGTCATATTAAAAAGACAAGCAC
AAGTGAATCATTGAACTGCAGACTGATGCTCTGTGGTTTCATAGTTCAAGCAAACCTCTAAAGC
GCCAGGCTTCATAGTGAAAATGTAGTCGGCTTAAAGCCACGCATGTGGCTAAAGGATCAATCAT
GATACACCTAGTACAGGAACGTAAAACTGCACTGGGGGAGTCTTGCCCAACCCGCCTTACCAAA
CTGCAAGTCAGGGGAACCCAAGTCTGCCTGGGGCCCCTGGCAGCTCTCCACAGAATTTGCATTT
AAAGGAGCAGAATTGAGTCATTGTCTCACGGAAGCAGGGTCACCTTAAGGAGCAGGCAGGTCCC
AGCAGGCAGCTGATCTGAGCACCTACGGGCTGCGGGGACCCATAGACACCCTTGGATGTCCGTA
TTTCTCACAGTGGCGGGTGGCAGGAAGGCAAGGCCAGGTGGAGTTTGATGTCTACTACTGCATG
TGAACTTGAGCCGAAGCCCTCCTGTCGGATGCACTTTGACCCCTCCTGGCGGCCACACAGCAAA
TTCTCCAGTGTGAATCCTTAATCCAAGCCAGGACCACTTCGTGACACCACTGGGCAGACCCTCC
CCCACAGGTCAAGGCCTCTTCATTAGAATTCTGTGCCCCCTACCCCGAGCAGAACCTTACAGAG
ATCTGCCTCCAGCTCCCAGAGGCCCCTTCCTTGCTCCCTAGTACTCCTTCAGCTCACTTCATAG
GCCACCAGGCACCTCCAGGCAGCCTTGTGGGGGCACTGGACCTGTGCTATTCGCCTGGGAATTC
ACCCTGACGCCTCCTAATAAAAATCAAGGGGGAAAAAACCAAAGCAAACCAAAACACTTTGCCT
TCTAAAGGTTGTATACCAAGTATGCTTAGATAAAATAAGCCACTTTTCTATTATAAGATGGAAA
TAGTCATTGATACTATTTATTGTTGTGTGTGGTAGCTTGAAGCACGCCACTGTCCATTTATTTG
TAAGTGTAAAAATATGTGTTTGTTTAAGCCGCACTTAAAAAAGCCAGTGTCTGGTTTACACATT
TCAATCCTAGGTCATTGACATAAAAACGTTATCACCAGTGCTAGCTGTATGTGCCCTATTTAAT
AAAAGAGGTACTATAGCTGTACATTCTTTTTTTTTTTTTAATGTTGAAAGGGCTTTTTTAAGTT
TACAGGACACATACTAAGTGACTTGAGGGATTTTTTTGTGTGTTGAAATGTTACTATAGTGGCT
GCAGGCAGCAACCCAGAAACACTTTAAAAGTTTTATTTTCTTGGGAAAAATTCAAGCACTTCTT
CCTTCTCCCCTCACTCCAACCACTCCAGTGGGATAATTTACCTTTCTTAGAGCAAATTCTGCCC
CTTTTTACCCTGAGGGTTACGTTTTTCTTCTATCTTTTTTTTTTTTTTTAAACCGAATTCTTAC
TGTGCACTGGGTCGTGTGTATGATTTGTGATTTCAAGACCAAAGCAAAAGCTTTCTGCTACTGT
AGAACTCTGAACTAGCCAACACGCCACTTCCTGCAGGTGAAAATGGCTTGGTTTCCAGTGTGAT
CAATCCAGCCACTTTTGAAACCTGCTGGAACCGATGTCAGAGTCCCAGAACAGGTACCAAAGCT
GTAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATGGCACCCAGCTTGCCAGC
TTGGAACTGAAAGACTCCACAAGTCAGCTGTGGTTCGCTCTTTTTGTCTTACCACCCCACCCCC
CAGGGCCTTTTAAAAAAGTGAGCAGAGAATTCCACACCCTTAGGGACCATCCAAGGCAAGTGCC
GAGGGAGGAGCTGTGTGTCCTGGTGTATCGTTGCGTCCGTTCCCAGGAAAGGGACTGACTCAGA
GTCTAGGTTAATACGTGGAAACACAAGCATTAGCAAAAACAATCATTATACCGATGACATTCGG
AAGAACCACAATAAATAAAAGATGACTCCTCCAGACCTTGAATTTGTTGTTCTTAAAAAGATAA
TGCATTTCAAAAATATTTTCTATGTGAGAACTTTTTAGATGTTTGTTTACTTCATGTTTACAAA
TAACTGTTTGCTTTTCATGCAGTACTTTGAAATATATCAGCCAGAACCATAACTTACAGTAATT
TCTTAGGTATTCTGAATAAAATTCCATTTTTTTTTTCTGGATATGCTTTACCATTCTTAGATTT
CTGTGGAACAAAAATATTTGTAGCATTTTGTGTAAATACGAGCTTTTCATTTTAATTTTTACCC
CCCCCATTGCTGTTGCCCAAGATTTGCTTTCCGTGCACATATTGTACAAATTCTGCTTTGTGCC
ACAGGTCATGACTGTGGATGAGTTTACTCTTAACTTCAAAGGGACTATTTGTATTGTATGTCGC
AACTGTAAATTGAATTATTTGGCATTTTTTTCTCATGACTGTAATATTAATTTGAAGTTTGAAT
TTAATTGTCAATAAAATGGCTTTTTTGGTTTTGTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003482251	(Get FASTA)	NCBI Sequence Viewer
	XP_005666130	(Get FASTA)	NCBI Sequence Viewer
	XP_005666131	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ACD87444	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000032242
	ENSSSCP00000032242.3
	ENSSSCP00000050807
	ENSSSCP00000050807.2
	ENSSSCP00000073388.2
	ENSSSCP00015007726.1
	ENSSSCP00025014009.1
	ENSSSCP00025014078.1
	ENSSSCP00025014131.1
	ENSSSCP00030042498.1
	ENSSSCP00030042624.1
	ENSSSCP00035046917.1
	ENSSSCP00035046936.1
	ENSSSCP00035046962.1
	ENSSSCP00035046996.1
	ENSSSCP00040001116.1
	ENSSSCP00040001122.1
	ENSSSCP00040001128.1
	ENSSSCP00045023218.1
	ENSSSCP00045023461.1
	ENSSSCP00050002029.1
	ENSSSCP00050002073.1
	ENSSSCP00055026308.1
	ENSSSCP00055026385.1
	ENSSSCP00055026457.1
	ENSSSCP00055026505.1
	ENSSSCP00060010689.1
	ENSSSCP00065035822.1
	ENSSSCP00065035867.1
	ENSSSCP00070036244.1

RefSeq Acc Id:	XP_003482251 ⟸ XM_003482203
- Peptide Label:	isoform X1
- UniProtKB:	A0A480XW93 (UniProtKB/TrEMBL), A0A8D1KYV6 (UniProtKB/TrEMBL), A0A286ZKW6 (UniProtKB/TrEMBL), A0A8D1QYD0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLHSPHKQPQNHKCGANFLQEDSKKSLVFKWLISAGHYQPPRPTEAFKAASRIYNRGYKFYLKK KGGTMASNSLFSTVTPCQQNFFWDPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQ QQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSV LPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVG RSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDDSKPSLFSDRLSDLGRIP HPSMRVGVPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSYLSQMTSPSIHS TTPLSSTRGTGLPAITDVPRRISDDDTATSDFCLWPSTLSKKSQAGASELGPFSDPRQFPSISS LTESRFSNPRMHYPATFTYTPPVTSGMSLGMSATTHYHTYLPPPYPGSSQSQSGPFQTSSTPYL YYGTSSGPYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNS SGRMDESVWRPY hide sequence

RefSeq Acc Id:	XP_005666130 ⟸ XM_005666073
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1R1Z5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLHSPHKQPQNHKCGANFLQEDSKKSLVFKWLISAGHYQPPRPTEAFKAASRIYNRGYKFYLKK KGGTMASNSLFSTVTPCQQNFFWDPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQ QQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSV LPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVG RSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDDSKPSLFSDRLSDLGRIP HPSMRVGVPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSYLSQMTSPSIHS TTPLSSTRGTGLPAITDVPRRISGASELGPFSDPRQFPSISSLTESRFSNPRMHYPATFTYTPP VTSGMSLGMSATTHYHTYLPPPYPGSSQSQSGPFQTSSTPYLYYGTSSGPYQFPMVPGGDRSPS RMLPPCTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY hide sequence

RefSeq Acc Id:	XP_005666131 ⟸ XM_005666074
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1QYD0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLHSPHKQPQNHKCGANFLQEDSKKSLVFKWLISAGHYQPPRPTEAFKAASRIYNRGYKFYLKK KGGTMASNSLFSTVTPCQQNFFWDPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQ QQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSV LPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVG RSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRNPRQAQSSPPWSYDQSYPSYLSQMT SPSIHSTTPLSSTRGTGLPAITDVPRRISDDDTATSDFCLWPSTLSKKSQAGASELGPFSDPRQ FPSISSLTESRFSNPRMHYPATFTYTPPVTSGMSLGMSATTHYHTYLPPPYPGSSQSQSGPFQT SSTPYLYYGTSSGPYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPNLPNQNDGVDADGSHSSS PTVLNSSGRMDESVWRPY hide sequence

Ensembl Acc Id:

ENSSSCP00000067616 ⟸ ENSSSCT00000088700

Ensembl Acc Id:

ENSSSCP00000073388 ⟸ ENSSSCT00000083673

Ensembl Acc Id:

ENSSSCP00000040420 ⟸ ENSSSCT00000044704

Ensembl Acc Id:

ENSSSCP00000070509 ⟸ ENSSSCT00000089878

Ensembl Acc Id:

ENSSSCP00000068961 ⟸ ENSSSCT00000090875

Ensembl Acc Id:

ENSSSCP00000050807 ⟸ ENSSSCT00000059192

Ensembl Acc Id:

ENSSSCP00000001863 ⟸ ENSSSCT00000001910

Ensembl Acc Id:

ENSSSCP00000032242 ⟸ ENSSSCT00000053493

Protein Domains

Runt Runx C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000001710	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015014884	UniProtKB/TrEMBL
	ENSSSCG00025024902	UniProtKB/TrEMBL
	ENSSSCG00030066019	UniProtKB/TrEMBL
	ENSSSCG00035079177	UniProtKB/TrEMBL
	ENSSSCG00040002901	UniProtKB/TrEMBL
	ENSSSCG00045019606	UniProtKB/TrEMBL
	ENSSSCG00050003674	UniProtKB/TrEMBL
	ENSSSCG00055016629	UniProtKB/TrEMBL
	ENSSSCG00060018768	UniProtKB/TrEMBL
	ENSSSCG00065060039	UniProtKB/TrEMBL
	ENSSSCG00070021695	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000053493	ENTREZGENE
	ENSSSCT00000053493.3	UniProtKB/TrEMBL
	ENSSSCT00000059192	ENTREZGENE
	ENSSSCT00000059192.3	UniProtKB/TrEMBL
	ENSSSCT00000083673.2	UniProtKB/TrEMBL
	ENSSSCT00015019681.1	UniProtKB/TrEMBL
	ENSSSCT00025033664.1	UniProtKB/TrEMBL
	ENSSSCT00025033823.1	UniProtKB/TrEMBL
	ENSSSCT00025033952.1	UniProtKB/TrEMBL
	ENSSSCT00030092360.1	UniProtKB/TrEMBL
	ENSSSCT00030092641.1	UniProtKB/TrEMBL
	ENSSSCT00035108319.1	UniProtKB/TrEMBL
	ENSSSCT00035108356.1	UniProtKB/TrEMBL
	ENSSSCT00035108414.1	UniProtKB/TrEMBL
	ENSSSCT00035108467.1	UniProtKB/TrEMBL
	ENSSSCT00040003652.1	UniProtKB/TrEMBL
	ENSSSCT00040003683.1	UniProtKB/TrEMBL
	ENSSSCT00040003706.1	UniProtKB/TrEMBL
	ENSSSCT00045033484.1	UniProtKB/TrEMBL
	ENSSSCT00045033845.1	UniProtKB/TrEMBL
	ENSSSCT00050004983.1	UniProtKB/TrEMBL
	ENSSSCT00050005081.1	UniProtKB/TrEMBL
	ENSSSCT00055033035.1	UniProtKB/TrEMBL
	ENSSSCT00055033127.1	UniProtKB/TrEMBL
	ENSSSCT00055033222.1	UniProtKB/TrEMBL
	ENSSSCT00055033290.1	UniProtKB/TrEMBL
	ENSSSCT00060025301.1	UniProtKB/TrEMBL
	ENSSSCT00065082254.1	UniProtKB/TrEMBL
	ENSSSCT00065082330.1	UniProtKB/TrEMBL
	ENSSSCT00070043083.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.720	UniProtKB/TrEMBL
InterPro	AML1_Runt	UniProtKB/TrEMBL
	p53-like_TF_DNA-bd	UniProtKB/TrEMBL
	p53/RUNT-type_TF_DNA-bd_sf	UniProtKB/TrEMBL
	Runt_dom	UniProtKB/TrEMBL
	Runx_central_dom_sf	UniProtKB/TrEMBL
	RunxI_C_dom	UniProtKB/TrEMBL
	TF_Runt-rel_RUNX	UniProtKB/TrEMBL
NCBI Gene	RUNX2	ENTREZGENE
PANTHER	PTHR11950	UniProtKB/TrEMBL
	RUNT-RELATED TRANSCRIPTION FACTOR 2	UniProtKB/TrEMBL
Pfam	Runt	UniProtKB/TrEMBL
	RunxI	UniProtKB/TrEMBL
PIRSF	TF_Runt-rel_RUNX	UniProtKB/TrEMBL
PRINTS	ONCOGENEAML1	UniProtKB/TrEMBL
PROSITE	RUNT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49417	UniProtKB/TrEMBL
UniProt	A0A286ZKW6	ENTREZGENE, UniProtKB/TrEMBL
	A0A287B3G3_PIG	UniProtKB/TrEMBL
	A0A480XW93	ENTREZGENE
	A0A4X1V3U0_PIG	UniProtKB/TrEMBL
	A0A5G2R7Z2_PIG	UniProtKB/TrEMBL
	A0A8D1BHV3_PIG	UniProtKB/TrEMBL
	A0A8D1KYV6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1QYD0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1R1Z5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D2CCT3_PIG	UniProtKB/TrEMBL
	B3GBX6_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A480XW93	UniProtKB/TrEMBL
VGNC ID	VGNC:92517	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-09	RUNX2	RUNX family transcription factor 2		runt related transcription factor 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)