Bdnf (brain derived neurotrophic factor) - Rat Genome Database

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Gene: Bdnf (brain derived neurotrophic factor) Ictidomys tridecemlineatus
Analyze
Symbol: Bdnf
Name: brain derived neurotrophic factor
RGD ID: 12486175
Description: ENCODES a protein that exhibits neurotrophin TRKB receptor binding (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axon target recognition (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acute stress disorder (ortholog); alcohol dependence (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: brain derived neurotrophic factor, transcript variant X1; brain derived neurotrophic factor, transcript variant X2; brain derived neurotrophic factor, transcript variant X3; brain derived neurotrophic factor, transcript variant X4; brain derived neurotrophic factor, transcript variant X5; brain-derived neurotrophic factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494736,374,992 - 36,427,979 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365405,529,942 - 5,585,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365405,530,081 - 5,582,765 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 223 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BdnfSquirrelacoustic neuroma  ISOBDNF (Homo sapiens)9068941mRNA:increased expression:peripheral nerve:RGDPMID:19937367 and REF_RGD_ID:8655552
BdnfSquirrelacute stress disorder  ISOBdnf (Rattus norvegicus)9068941mRNA:increased expression:prefrontal cortexRGDPMID:30425618 and REF_RGD_ID:597830163
BdnfSquirrelalcohol dependence treatmentISOBdnf (Rattus norvegicus)9068941 RGDPMID:32579730 more ...
BdnfSquirrelalcohol dependence sexual_dimorphism ISOBdnf (Mus musculus)9068941protein:altered expression:hippocampusRGDPMID:37303582 and REF_RGD_ID:596936394
BdnfSquirrelalcohol dependence disease_progressionISOBDNF (Homo sapiens)9068941DNA:SNP: :66V>MRGDPMID:19170664 and REF_RGD_ID:597830066
BdnfSquirrelalcohol use disorder  ISOBdnf (Rattus norvegicus)9068941protein:decreased expression:plasmaRGDPMID:32135570 and REF_RGD_ID:35673317
BdnfSquirrelalcohol use disorder treatmentISOBdnf (Rattus norvegicus)9068941 RGDPMID:33919862 and REF_RGD_ID:596933362
BdnfSquirrelalcohol use disorder  ISOBdnf (Mus musculus)9068941protein:decreased expression:cerebellum and hippocampusRGDPMID:19100286 and REF_RGD_ID:401976492
BdnfSquirrelalcohol use disorder  ISOBDNF (Homo sapiens)9068941protein:decreased expression:plasma (human)RGDPMID:30277635 and REF_RGD_ID:401938665
BdnfSquirrelalcohol use disorder  ISOBdnf (Rattus norvegicus)9068941mRNA more ...RGDPMID:30277635 and REF_RGD_ID:401938665
BdnfSquirrelalcohol use disorder  ISOBdnf (Mus musculus)9068941mRNA and protein:altered expression:brainRGDPMID:32330588 and REF_RGD_ID:596936412
BdnfSquirrelalcohol use disorder  ISOBdnf (Rattus norvegicus)9068941protein:altered expression:brainRGDPMID:15307153 and REF_RGD_ID:401965482
BdnfSquirrelalcohol withdrawal syndrome severityISOBDNF (Homo sapiens)9068941 RGDPMID:20553781 and REF_RGD_ID:405849399
BdnfSquirrelalcohol withdrawal syndrome  ISOBdnf (Rattus norvegicus)9068941protein:increased expression:hippocampus and prefrontal cortexRGDPMID:26659122 and REF_RGD_ID:596936245
BdnfSquirrelAlcohol-Related Disorders  ISOBdnf (Rattus norvegicus)9068941protein:altered expression:cerebral cortexRGDPMID:14604765 and REF_RGD_ID:401976539
BdnfSquirrelAlcohol-Related Disorders  ISOBdnf (Rattus norvegicus)9068941protein:altered expression:brainRGDPMID:10837897 and REF_RGD_ID:401965408
BdnfSquirrelAlcohol-Related Disorders sexual_dimorphismISOBdnf (Rattus norvegicus)9068941protein:altered expression:frontal cortex more ...RGDPMID:18652597 and REF_RGD_ID:401976540
BdnfSquirrelAlcoholic Intoxication  ISOBdnf (Mus musculus)9068941mRNA and protein:decreased expression:cerebellumRGDPMID:19861148 and REF_RGD_ID:401965398
BdnfSquirrelalopecia  ISOBDNF (Homo sapiens)9068941protein:increased expression:dermal papilla:RGDPMID:21729031 and REF_RGD_ID:8657081
BdnfSquirrelAlzheimer's disease treatmentISOBdnf (Mus musculus)9068941 RGDPMID:30776009 and REF_RGD_ID:405850256
1 to 20 of 223 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BdnfSquirrelcongenital central hypoventilation syndrome  ISOBDNF (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital central hypoventilationClinVarPMID:11840487 more ...
BdnfSquirrelgenetic disease  ISOBDNF (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:24048383 more ...
BdnfSquirrelintellectual disability  ISOBDNF (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
BdnfSquirrelMemory Disorders  ISOBDNF (Homo sapiens)8554872ClinVar Annotator: match by term: Memory impairment and susceptibility toClinVarPMID:12140781 more ...
BdnfSquirrelobesity  ISOBDNF (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11840487 more ...
1 to 20 of 27 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BdnfSquirrelAlzheimer's disease  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:17344400
BdnfSquirrelamphetamine abuse  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20736000
BdnfSquirrelautism spectrum disorder  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:24781735
BdnfSquirrelautistic disorder  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:17349978 and PMID:20662941
BdnfSquirrelbipolar disorder  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:14708030 and PMID:19018715
BdnfSquirrelBody Weight  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:22344219 and PMID:22344221
BdnfSquirrelBrain Injuries  ISOBDNF (Homo sapiens)9068941CTD more ...CTDPMID:15500971 and PMID:21269288
BdnfSquirrelbrain ischemia  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:19922383
BdnfSquirrelCocaine-Related Disorders  ISOBDNF (Homo sapiens)9068941CTD more ...CTDPMID:14973246 more ...
BdnfSquirrelDeafness  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:18607918 and PMID:19365690
BdnfSquirreldepressive disorder  ISOBDNF (Homo sapiens)9068941CTD more ...CTDPMID:16330021 and PMID:21945287
BdnfSquirrelepilepsy  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:15282290
BdnfSquirrelepilepsy with generalized tonic-clonic seizures  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:16023256
BdnfSquirrelGliosis  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:21087489
BdnfSquirrelheroin dependence  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:17715210
BdnfSquirrelHypoxia  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:16553631
BdnfSquirrelInflammation  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:21087489
BdnfSquirrelmorbid obesity  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:21708048
BdnfSquirrelNerve Degeneration  ISOBDNF (Homo sapiens)9068941CTD more ...CTDPMID:15372491 more ...
BdnfSquirrelnervous system disease  ISOBDNF (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:22240983
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Biological Process
1 to 20 of 96 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BdnfSquirrelaxon extension acts_upstream_of_or_withinISOBdnf (Mus musculus)9068941 PMID:24035762MGIPMID:24035762
BdnfSquirrelaxon guidance acts_upstream_of_or_withinISOMGI:19299869068941 PMID:15014133MGIPMID:15014133
BdnfSquirrelaxon target recognition acts_upstream_of_or_withinISOMGI:19300389068941 PMID:15464571MGIPMID:15464571
BdnfSquirrelbehavioral fear response acts_upstream_of_or_withinISOMGI:21767509068941 PMID:15249684MGIPMID:15249684
BdnfSquirrelbehavioral response to cocaine  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:23583595 and REF_RGD_ID:38501054
BdnfSquirrelcell surface receptor protein tyrosine kinase signaling pathway involved_inIEAPANTHER:PTN000173572150520179 TreeGrafterGO_REF:0000118
BdnfSquirrelcellular response to nerve growth factor stimulus  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:21958434 and REF_RGD_ID:8657122
BdnfSquirrelcellular response to norepinephrine stimulus  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:16292510 and REF_RGD_ID:8655645
BdnfSquirrelcellular response to potassium ion  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:25424568 and REF_RGD_ID:11060597
BdnfSquirrelcellular response to tumor necrosis factor  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:21958434 and REF_RGD_ID:8657122
BdnfSquirrelchronic inflammatory response  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:20223282 and REF_RGD_ID:4891140
BdnfSquirrelcircadian rhythm involved_inISOBdnf (Mus musculus)9068941 PMID:23785138UniProtPMID:23785138
BdnfSquirrelcognition  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:20852970 and REF_RGD_ID:4891128
BdnfSquirrelcollateral sprouting involved_inIEAUniProtKB:P23560 and ensembl:ENSP00000349084150520179 EnsemblGO_REF:0000107
BdnfSquirrelconditioned place preference  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:23583595 and REF_RGD_ID:38501054
BdnfSquirreldendrite development acts_upstream_of_or_withinISOBdnf (Mus musculus)9068941 PMID:12890780MGIPMID:12890780
BdnfSquirreldendrite extension acts_upstream_of_or_withinISOBdnf (Mus musculus)9068941 PMID:24035762MGIPMID:24035762
BdnfSquirrelexcitatory postsynaptic potential  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:17192436 and REF_RGD_ID:1600576
BdnfSquirrelfear response acts_upstream_of_or_withinISOMGI:21767509068941 PMID:15249684MGIPMID:15249684
BdnfSquirrelfeeding behavior acts_upstream_of_or_withinISOMGI:26630469068941 PMID:12796784MGIPMID:12796784
1 to 20 of 96 rows

Cellular Component
1 to 20 of 23 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BdnfSquirrelaxon  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:11050383 and REF_RGD_ID:8655586
BdnfSquirrelaxon located_inIEAPANTHER:PTN000173572150520179 TreeGrafterGO_REF:0000118
BdnfSquirrelcytoplasm located_inISOBdnf (Mus musculus)9068941 PMID:22209827UniProtPMID:22209827
BdnfSquirrelcytoplasmic vesicle located_inISOBdnf (Mus musculus)9068941 PMID:14715936 and PMID:15242649MGIPMID:14715936 and PMID:15242649
BdnfSquirreldendrite  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:8726105 and REF_RGD_ID:8657068
BdnfSquirreldendrite located_inIEAPANTHER:PTN000173572150520179 TreeGrafterGO_REF:0000118
BdnfSquirrelextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
BdnfSquirrelextracellular region located_inIEAARBA:ARBA00027128150520179 UniProtGO_REF:0000117
BdnfSquirrelextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
BdnfSquirrelextracellular space  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:10779676 more ...
BdnfSquirrelextracellular space located_inIEAPANTHER:PTN000173572150520179 TreeGrafterGO_REF:0000118
BdnfSquirrelglutamatergic synapse is_active_inISOBdnf (Mus musculus)9068941 PMID:19448629SynGOPMID:19448629
BdnfSquirrelhippocampal mossy fiber to CA3 synapse is_active_inISOBdnf (Mus musculus)9068941 PMID:22412021SynGOPMID:22412021
BdnfSquirrelmitochondrial crista  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:16626872 and REF_RGD_ID:8655644
BdnfSquirrelneuronal cell body  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:8726105 and REF_RGD_ID:8657068
BdnfSquirrelneuronal dense core vesicle is_active_inISOBdnf (Mus musculus)9068941 PMID:22412021SynGOPMID:22412021
BdnfSquirrelperikaryon  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:16626872 and REF_RGD_ID:8655644
BdnfSquirrelperinuclear region of cytoplasm located_inISOBdnf (Mus musculus)9068941 PMID:22209827UniProtPMID:22209827
BdnfSquirrelsecretory granule  ISOBdnf (Rattus norvegicus)9068941 RGDPMID:20739562 and REF_RGD_ID:405878059
BdnfSquirrelsecretory granule located_inISOBdnf (Mus musculus)9068941 PMID:24573299MGIPMID:24573299
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Molecular Function
1 to 11 of 11 rows

  
1 to 11 of 11 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BdnfSquirrelbrain-derived neurotrophic factor signaling pathway  ISOBDNF (Homo sapiens)9068941 RGDPMID:23670594 and REF_RGD_ID:11062158
PMID:30032202  



Bdnf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494736,374,992 - 36,427,979 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365405,529,942 - 5,585,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365405,530,081 - 5,582,765 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BDNF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381127,654,893 - 27,722,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1127,654,893 - 27,722,058 (-)EnsemblGRCh38hg38GRCh38
GRCh371127,676,440 - 27,743,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361127,633,016 - 27,699,872 (-)NCBINCBI36Build 36hg18NCBI36
Build 341127,633,019 - 27,637,249NCBI
Celera1127,822,548 - 27,889,725 (-)NCBICelera
Cytogenetic Map11p14.1NCBI
HuRef1127,374,586 - 27,441,772 (-)NCBIHuRef
CHM1_11127,675,184 - 27,742,527 (-)NCBICHM1_1
T2T-CHM13v2.01127,795,301 - 27,862,460 (-)NCBIT2T-CHM13v2.0
Bdnf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392109,505,045 - 109,557,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2109,505,045 - 109,557,352 (+)EnsemblGRCm39 Ensembl
GRCm382109,674,700 - 109,727,043 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2109,674,700 - 109,727,007 (+)EnsemblGRCm38mm10GRCm38
MGSCv372109,514,857 - 109,567,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362109,475,539 - 109,527,845 (+)NCBIMGSCv36mm8
Celera2110,835,441 - 110,887,723 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.63NCBI
Bdnf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83116,619,633 - 116,670,212 (+)NCBIGRCr8
mRatBN7.2396,165,042 - 96,215,621 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl396,165,042 - 96,215,615 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx399,726,226 - 99,776,801 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03108,325,184 - 108,375,759 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03106,087,694 - 106,138,272 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03100,768,637 - 100,819,216 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3100,768,637 - 100,819,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03107,371,329 - 107,421,908 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera395,191,318 - 95,241,949 (+)NCBICelera
Cytogenetic Map3q34NCBI
Bdnf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554766,772,088 - 6,822,588 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554766,773,244 - 6,822,201 (-)NCBIChiLan1.0ChiLan1.0
BDNF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2929,867,082 - 29,934,015 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11129,867,593 - 29,934,527 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,618,322 - 27,687,661 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,520,306 - 27,589,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,520,312 - 27,589,239 (-)Ensemblpanpan1.1panPan2
BDNF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12148,191,580 - 48,243,699 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2148,192,670 - 48,204,480 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2147,689,871 - 47,691,000 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02149,335,793 - 49,386,964 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12148,338,131 - 48,339,260 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02148,489,388 - 48,490,517 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02149,083,467 - 49,084,596 (-)NCBIUU_Cfam_GSD_1.0
BDNF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl232,624,048 - 32,679,765 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1232,623,668 - 32,679,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2235,206,996 - 35,265,002 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BDNF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,386,825 - 37,451,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,449,593 - 37,450,336 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038134,690,869 - 134,762,531 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bdnf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476617,279,630 - 17,330,490 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476617,281,882 - 17,330,601 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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1 to 10 of 106 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 16q13-22.2(chr16:56883592-71279975)x3 copy number gain See cases [RCV000052405] Chr16:56883592..71279975 [GRCh38]
Chr16:56917504..71313878 [GRCh37]
Chr16:55475005..69871379 [NCBI36]
Chr16:16q13-22.2		 pathogenic
GRCh38/hg38 16q21-23.1(chr16:58456122-74708723)x3 copy number gain See cases [RCV000052408] Chr16:58456122..74708723 [GRCh38]
Chr16:58490026..74742621 [GRCh37]
Chr16:57047527..73300122 [NCBI36]
Chr16:16q21-23.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 copy number gain See cases [RCV000052421] Chr16:65313395..90081985 [GRCh38]
Chr16:65347298..90148393 [GRCh37]
Chr16:63904799..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:63318997-70555249)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|See cases [RCV000053334] Chr16:63318997..70555249 [GRCh38]
Chr16:63352901..70589152 [GRCh37]
Chr16:61910402..69146653 [NCBI36]
Chr16:16q21-22.1		 pathogenic
NM_018667.3(SMPD3):c.1955A>T (p.Glu652Val) single nucleotide variant Malignant melanoma [RCV000063081] Chr16:68361219 [GRCh38]
Chr16:68395122 [GRCh37]
Chr16:66952623 [NCBI36]
Chr16:16q22.1		 not provided
GRCh38/hg38 16q21-24.1(chr16:62925929-84585795)x3 copy number gain See cases [RCV000135863] Chr16:62925929..84585795 [GRCh38]
Chr16:62959833..84619401 [GRCh37]
Chr16:61517334..83176902 [NCBI36]
Chr16:16q21-24.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65511483-90096995)x3 copy number gain See cases [RCV000139426] Chr16:65511483..90096995 [GRCh38]
Chr16:65545386..90163403 [GRCh37]
Chr16:64102887..88690904 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:64389378-90081985)x3 copy number gain See cases [RCV000142578] Chr16:64389378..90081985 [GRCh38]
Chr16:64423281..90148393 [GRCh37]
Chr16:62980782..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic|likely pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3		 pathogenic
GRCh38/hg38 16q12.1-22.1(chr16:49685521-68401712)x3 copy number gain See cases [RCV000143752] Chr16:49685521..68401712 [GRCh38]
Chr16:49719432..68435615 [GRCh37]
Chr16:48276933..66993116 [NCBI36]
Chr16:16q12.1-22.1		 pathogenic
1 to 10 of 106 rows






Ensembl Acc Id: ENSSTOT00000009444   ⟹   ENSSTOP00000008471
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365405,570,032 - 5,582,260 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000042028   ⟹   ENSSTOP00000028780
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365405,529,942 - 5,585,014 (+)Ensembl
RefSeq Acc Id: XM_005328049   ⟹   XP_005328106
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,374,992 - 36,427,979 (+)NCBI
SpeTri2.0NW_0049365405,530,081 - 5,582,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005328050   ⟹   XP_005328107
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,376,353 - 36,427,979 (+)NCBI
SpeTri2.0NW_0049365405,531,139 - 5,582,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005328051   ⟹   XP_005328108
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,395,915 - 36,427,979 (+)NCBI
SpeTri2.0NW_0049365405,550,721 - 5,582,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005328053   ⟹   XP_005328110
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,397,071 - 36,427,979 (+)NCBI
SpeTri2.0NW_0049365405,551,877 - 5,582,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284582   ⟹   XP_040140516
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,376,908 - 36,427,979 (+)NCBI
RefSeq Acc Id: XM_040284583   ⟹   XP_040140517
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,376,410 - 36,427,979 (+)NCBI
RefSeq Acc Id: XM_040284584   ⟹   XP_040140518
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,377,357 - 36,427,979 (+)NCBI
RefSeq Acc Id: XM_040284585   ⟹   XP_040140519
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494736,376,359 - 36,427,979 (+)NCBI
1 to 5 of 10 rows
1 to 5 of 10 rows
RefSeq Acc Id: XP_005328106   ⟸   XM_005328049
- Peptide Label: isoform X2
- UniProtKB: A0A287D5J1 (UniProtKB/TrEMBL),   I3MDK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005328107   ⟸   XM_005328050
- Peptide Label: isoform X3
- UniProtKB: I3MDK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005328108   ⟸   XM_005328051
- Peptide Label: isoform X3
- UniProtKB: I3MDK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005328110   ⟸   XM_005328053
- Peptide Label: isoform X3
- UniProtKB: I3MDK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140519   ⟸   XM_040284585
- Peptide Label: isoform X3
- UniProtKB: I3MDK3 (UniProtKB/TrEMBL)
Nerve growth factor-related



1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000009446 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009444.3 UniProtKB/TrEMBL
  ENSSTOT00000042028.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Brain-der_neurotrophic_factor UniProtKB/TrEMBL
  Cystine-knot_cytokine UniProtKB/TrEMBL
  Nerve_growth_factor-like UniProtKB/TrEMBL
  Nerve_growth_factor-rel UniProtKB/TrEMBL
  Nerve_growth_factor_CS UniProtKB/TrEMBL
NCBI Gene Bdnf ENTREZGENE
PANTHER PTHR11589 UniProtKB/TrEMBL
  PTHR11589:SF3 UniProtKB/TrEMBL
Pfam NGF UniProtKB/TrEMBL
PIRSF NGF UniProtKB/TrEMBL
PRINTS BDNFACTOR UniProtKB/TrEMBL
  NGF UniProtKB/TrEMBL
PROSITE NGF_1 UniProtKB/TrEMBL
  NGF_2 UniProtKB/TrEMBL
SMART NGF UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt A0A287D5J1 ENTREZGENE, UniProtKB/TrEMBL
  I3MDK3 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows