STXBP1 (syntaxin binding protein 1) - Rat Genome Database

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Gene: STXBP1 (syntaxin binding protein 1) Canis lupus familiaris
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Symbol: STXBP1
Name: syntaxin binding protein 1
RGD ID: 12241528
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phospholipase binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN axon target recognition (ortholog); cellular response to interferon-gamma (ortholog); developmental process involved in reproduction (ortholog); PARTICIPATES IN insulin secretion pathway; synaptic vesicle exocytosis - neurotransmitter release pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Bardet-Biedl syndrome 1 (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: syntaxin-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,690,939 - 55,768,008 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,678,264 - 55,727,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,884,147 - 54,958,397 (-)NCBI
ROS_Cfam_1.0956,612,796 - 56,687,174 (-)NCBI
UMICH_Zoey_3.1955,372,644 - 55,447,116 (-)NCBI
UNSW_CanFamBas_1.0955,687,749 - 55,761,958 (-)NCBI
UU_Cfam_GSD_1.0955,778,988 - 55,853,304 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
STXBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,690,939 - 55,768,008 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,678,264 - 55,727,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,884,147 - 54,958,397 (-)NCBI
ROS_Cfam_1.0956,612,796 - 56,687,174 (-)NCBI
UMICH_Zoey_3.1955,372,644 - 55,447,116 (-)NCBI
UNSW_CanFamBas_1.0955,687,749 - 55,761,958 (-)NCBI
UU_Cfam_GSD_1.0955,778,988 - 55,853,304 (-)NCBI
STXBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9127,579,370 - 127,696,027 (+)EnsemblGRCh38hg38GRCh38
GRCh389127,611,912 - 127,696,029 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379130,374,191 - 130,458,308 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,414,390 - 129,494,816 (+)NCBINCBI36hg18NCBI36
Build 349127,454,121 - 127,534,549NCBI
Celera9101,025,378 - 101,105,881 (+)NCBI
Cytogenetic Map9q34.11NCBI
HuRef999,990,647 - 100,071,101 (+)NCBIHuRef
CHM1_19130,525,679 - 130,606,190 (+)NCBICHM1_1
Stxbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,677,619 - 32,737,249 (-)NCBIGRCm39mm39
GRCm39 Ensembl232,677,614 - 32,737,257 (-)Ensembl
GRCm38232,787,607 - 32,847,237 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,787,602 - 32,847,245 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,643,127 - 32,702,757 (-)NCBIGRCm37mm9NCBIm37
MGSCv36232,609,971 - 32,669,135 (-)NCBImm8
Celera232,494,462 - 32,554,183 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Stxbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2316,076,725 - 16,138,431 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl316,076,391 - 16,138,369 (-)Ensembl
Rnor_6.0311,823,779 - 11,885,479 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,823,785 - 11,885,417 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0317,160,752 - 17,221,893 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,762,105 - 11,825,531 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1311,658,476 - 11,721,903 (-)NCBI
Celera310,816,317 - 10,877,576 (-)NCBICelera
RH 3.4 Map379.6RGD
Cytogenetic Map3p11NCBI
Stxbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419963,829 - 1,000,759 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955419963,829 - 1,000,759 (-)NCBIChiLan1.0ChiLan1.0
STXBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19127,434,080 - 127,483,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,434,080 - 127,486,152 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0998,731,527 - 98,811,608 (+)NCBIMhudiblu_PPA_v0panPan3
Stxbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,532,283 - 195,598,947 (+)NCBI
SpeTri2.0NW_00493648715,300,758 - 15,367,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STXBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,116,118 - 268,213,921 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,116,124 - 268,205,805 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,023,293 - 302,098,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STXBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,440,061 - 10,519,798 (-)NCBI
ChlSab1.1 Ensembl1210,439,801 - 10,519,777 (-)Ensembl
Vero_WHO_p1.0NW_0236660795,699,673 - 5,781,129 (+)NCBI
Stxbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247607,843,741 - 7,914,444 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005625340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038487363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005625340   ⟹   XP_005625397
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1955,690,939 - 55,768,008 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022423793   ⟹   XP_022279501
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1955,690,939 - 55,727,680 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038487360   ⟹   XP_038343288
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1955,372,644 - 55,447,116 (-)NCBI
RefSeq Acc Id: XM_038487361   ⟹   XP_038343289
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1955,372,644 - 55,447,115 (-)NCBI
RefSeq Acc Id: XM_038487362   ⟹   XP_038343290
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1955,372,644 - 55,447,116 (-)NCBI
RefSeq Acc Id: XM_038487363   ⟹   XP_038343291
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1955,372,644 - 55,447,116 (-)NCBI
RefSeq Acc Id: XM_038549289   ⟹   XP_038405217
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0955,778,988 - 55,853,304 (-)NCBI
RefSeq Acc Id: XM_038549290   ⟹   XP_038405218
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0955,778,988 - 55,853,303 (-)NCBI
RefSeq Acc Id: XM_038549291   ⟹   XP_038405219
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0955,778,988 - 55,853,303 (-)NCBI
RefSeq Acc Id: XM_038549292   ⟹   XP_038405220
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0955,778,988 - 55,853,304 (-)NCBI
RefSeq Acc Id: XM_038613233   ⟹   XP_038469161
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0955,687,749 - 55,761,958 (-)NCBI
RefSeq Acc Id: XM_038613234   ⟹   XP_038469162
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0955,687,749 - 55,761,957 (-)NCBI
RefSeq Acc Id: XM_038613236   ⟹   XP_038469164
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0955,687,749 - 55,761,957 (-)NCBI
RefSeq Acc Id: XM_038613237   ⟹   XP_038469165
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0955,687,749 - 55,761,958 (-)NCBI
RefSeq Acc Id: XM_038618859   ⟹   XP_038474787
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha954,884,147 - 54,958,397 (-)NCBI
RefSeq Acc Id: XM_038618868   ⟹   XP_038474796
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha954,884,147 - 54,958,396 (-)NCBI
RefSeq Acc Id: XM_038618872   ⟹   XP_038474800
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha954,884,147 - 54,958,397 (-)NCBI
RefSeq Acc Id: XM_038618881   ⟹   XP_038474809
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha954,884,147 - 54,958,397 (-)NCBI
RefSeq Acc Id: XM_038678520   ⟹   XP_038534448
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0956,612,796 - 56,687,174 (-)NCBI
RefSeq Acc Id: XM_038678521   ⟹   XP_038534449
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0956,612,796 - 56,687,173 (-)NCBI
RefSeq Acc Id: XM_038678522   ⟹   XP_038534450
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0956,612,796 - 56,687,173 (-)NCBI
RefSeq Acc Id: XM_038678523   ⟹   XP_038534451
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0956,612,796 - 56,687,174 (-)NCBI
RefSeq Acc Id: XM_846461   ⟹   XP_851554
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1955,690,939 - 55,727,680 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_851554   ⟸   XM_846461
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005625397   ⟸   XM_005625340
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_022279501   ⟸   XM_022423793
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038343291   ⟸   XM_038487363
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038343290   ⟸   XM_038487362
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038343288   ⟸   XM_038487360
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038343289   ⟸   XM_038487361
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469165   ⟸   XM_038613237
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038469161   ⟸   XM_038613233
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038469162   ⟸   XM_038613234
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469164   ⟸   XM_038613236
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038534451   ⟸   XM_038678523
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038534448   ⟸   XM_038678520
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038534449   ⟸   XM_038678521
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038534450   ⟸   XM_038678522
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038474809   ⟸   XM_038618881
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038474800   ⟸   XM_038618872
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038474787   ⟸   XM_038618859
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038474796   ⟸   XM_038618868
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038405220   ⟸   XM_038549292
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038405217   ⟸   XM_038549289
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038405218   ⟸   XM_038549290
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038405219   ⟸   XM_038549291
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020125 Ensembl, ENTREZGENE
NCBI Gene STXBP1 ENTREZGENE
VGNC ID VGNC:46959 ENTREZGENE