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EXPERIMENTAL CONDITION - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:type II collagen
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Accession:XCO:0000281 term browser browse the term
Definition:A condition in which the major influencing factor is the fibrillar collagen which comprises the main component of cartilage and is also found in the vitreous humor of the eye. Collagens are a family of extracellular, closely related proteins occurring as a major component of connective tissue, giving it strength and flexibility.
Synonyms:exact_synonym: type 2 collagen


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type II collagen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Cia1 Collagen induced arthritis QTL 1 IDA RGD PMID:8782824 RGD:61062 NCBI chr20:1...14,100,378 JBrowse link
Q Cia10 Collagen induced arthritis QTL 10 IDA RGD PMID:9870869 RGD:61063 NCBI chr 2:182,635,347...227,635,347 JBrowse link
Q Cia11 Collagen induced arthritis QTL 11 IDA RGD PMID:10857786 RGD:61066 NCBI chr 3:50,766,145...95,766,145 JBrowse link
Q Cia12 Collagen induced arthritis QTL 12 IDA RGD PMID:10857786 RGD:61066 NCBI chr12:18,749,469...34,312,613 JBrowse link
Q Cia13 Collagen induced arthritis QTL 13 IDA RGD PMID:11001927 RGD:61067 NCBI chr 4:134,199,006...168,870,974 JBrowse link
Q Cia14 Collagen induced arthritis QTL 14 IDA RGD PMID:10857786 RGD:61066 NCBI chr19:10,833,618...74,246,245 JBrowse link
Q Cia15 Collagen induced arthritis QTL 15 IDA RGD PMID:11001927 RGD:61067 NCBI chr 9:5,346,479...50,416,711 JBrowse link
Q Cia16 Collagen induced arthritis QTL 16 IDA RGD PMID:11001927 RGD:61067 NCBI chr10:6,864,618...96,620,484 JBrowse link
Q Cia17 Collagen induced arthritis QTL 17 IDA RGD PMID:11001927 RGD:61067 NCBI chr18:31,610,505...72,538,878 JBrowse link
Q Cia18 Collagen induced arthritis QTL 18 IDA RGD PMID:11001927 RGD:61067 NCBI chr  X:80,434,318...125,434,318 JBrowse link
Q Cia19 Collagen induced arthritis QTL 19 IDA RGD PMID:11001927 RGD:61067 NCBI chr  X:105,468,858...125,434,318 JBrowse link
Q Cia2 Collagen induced arthritis QTL 2 IDA RGD PMID:8782824 RGD:61062 NCBI chr 1:100,345,976...145,345,976 JBrowse link
Q Cia20 Collagen induced arthritis QTL 20 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:23,948,641...107,713,808 JBrowse link
Q Cia21 Collagen induced arthritis QTL 21 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:14,991,535...107,713,808 JBrowse link
Q Cia22 Collagen induced arthritis QTL 22 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:40,535,708...107,713,808 JBrowse link
Q Cia23 Collagen induced arthritis QTL 23 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:40,535,708...107,713,808 JBrowse link
Q Cia24 Collagen induced arthritis QTL 24 IDA RGD PMID:10857786 RGD:61066 NCBI chr 4:148,121,375...176,967,367 JBrowse link
Q Cia25 Collagen induced arthritis QTL 25 IDA RGD PMID:15334486 RGD:1285224 NCBI chr12:2,747,694...47,747,694 JBrowse link
Q Cia26 Collagen induced arthritis QTL 26 IDA RGD PMID:15334486 RGD:1285224 NCBI chr18:64,383,762...79,484,311 JBrowse link
Q Cia27 Collagen induced arthritis QTL 27 IDA RGD PMID:9870869 RGD:61063 NCBI chr10:76,951,790...107,713,808 JBrowse link
Q Cia28 Collagen induced arthritis QTL 28 IDA RGD PMID:15944295 RGD:1359065 NCBI chr10:96,620,293...107,713,808 JBrowse link
Q Cia29 Collagen induced arthritis QTL 29 IDA RGD PMID:15944295 RGD:1359065
Q Cia3 Collagen induced arthritis QTL 3 IDA RGD PMID:8782824 RGD:61062 NCBI chr 4:63,224,393...108,224,393 JBrowse link
Q Cia4 Collagen induced arthritis QTL 4 IDA RGD PMID:8782824 RGD:61062 NCBI chr 7:59,998,661...63,890,004 JBrowse link
Q Cia5 Collagen induced arthritis QTL 5 IDA RGD PMID:8782824 RGD:61062 NCBI chr10:91,727,883...107,713,808 JBrowse link
Q Cia6 Collagen induced arthritis QTL 6 IDA RGD PMID:11001927 RGD:61067 NCBI chr 8:91,340,911...131,690,273 JBrowse link
Q Cia7 Collagen induced arthritis QTL 7 IDA RGD PMID:11001927 RGD:61067 NCBI chr 2:61,051,541...143,746,880 JBrowse link
Q Cia8 Collagen induced arthritis QTL 8 IDA RGD PMID:10398805 RGD:61069 NCBI chr 7:27,182,914...72,182,914 JBrowse link
Q Cia9 Collagen induced arthritis QTL 9 IDA RGD PMID:9870869 RGD:61063
Q Ciaa1 CIA Autoantibody QTL 1 IDA RGD PMID:11001927 RGD:61067
Q Ciaa2 CIA Autoantibody QTL 2 IDA RGD PMID:10857786 RGD:61066 NCBI chr10:63,719,161...107,713,808 JBrowse link
Q Ciaa3 CIA Autoantibody QTL 3 IDA RGD PMID:10857786 RGD:61066 NCBI chr 9:29,567,664...74,567,664 JBrowse link
Q Ciaa4 CIA Autoantibody QTL 4 IDA RGD PMID:11001927 RGD:61067 NCBI chr 4:123,870,974...168,870,974 JBrowse link
Q Ciaa5 CIA Autoantibody QTL 5 IDA RGD PMID:11001927 RGD:61067 NCBI chr 5:99,905,133...172,190,305 JBrowse link

Related Phenotype Data for Term "type II collagen" (XCO:0000281)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:
Term paths to the root
Path 1
Term Annotations click to browse term
  experimental condition 2376
    disease-inducing agent 223
      disease-inducing chemical 209
        arthritis inducing chemical 112
          collagen 34
            type II collagen 34
              IFA-CII emulsion 0
              bovine type II collagen 0
Path 2
Term Annotations click to browse term
  experimental condition 2376
    chemical 1266
      chemical with specified function 517
        disease-inducing chemical 209
          arthritis inducing chemical 112
            collagen 34
              type II collagen 34
                IFA-CII emulsion 0
                bovine type II collagen 0
paths to the root