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synaptic vesicle lumen acidification - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptic vesicle lumen acidification
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Accession:GO:0097401 term browser browse the term
Definition:The acidification of the synaptic vesicle lumen via transport of protons into the vesicle. The resulting electrochemical gradient powers neurotransmitter loading.
Synonyms:exact_synonym: synaptic vesicle lumen pH reduction;   synaptic vesicle proton loading

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synaptic vesicle lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap1 ATPase H+ transporting accessory protein 1 involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr  X:157,231,243...157,238,323
Ensembl chr  X:152,079,865...152,087,034 		JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr10:86,436,089...86,490,185
Ensembl chr10:85,935,854...85,989,895 		JBrowse link
G Atp6v0a4 ATPase H+ transporting V0 subunit a4 involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr 4:67,727,145...67,809,092
Ensembl chr 4:66,760,159...66,842,110 		JBrowse link
G Atp6v0c ATPase H+ transporting V0 subunit C involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr10:13,700,764...13,707,147
Ensembl chr10:13,196,204...13,201,500 		JBrowse link
G Atp6v0d1 ATPase H+ transporting V0 subunit D1 involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr19:50,313,268...50,357,248
Ensembl chr19:33,403,355...33,447,450 		JBrowse link
G Atp6v0e2 ATPase, H+ transporting V0 subunit e2 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:78,815,771...78,818,919
Ensembl chr 4:77,482,226...77,488,777 		JBrowse link
G Atp6v1a ATPase H+ transporting V1 subunit A involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr11:70,066,800...70,120,603
Ensembl chr11:56,560,974...56,614,694 		JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr 4:117,781,444...117,800,103
Ensembl chr 4:116,223,799...116,242,475 		JBrowse link
G Atp6v1b2 ATPase H+ transporting V1 subunit B2 involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr16:25,384,254...25,408,388
Ensembl chr16:20,617,518...20,641,745 		JBrowse link
G Atp6v1c1 ATPase H+ transporting V1 subunit C1 involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr 7:71,719,326...71,757,191
Ensembl chr 7:69,834,463...69,872,278 		JBrowse link
G Atp6v1d ATPase H+ transporting V1 subunit D involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr 6:103,389,778...103,405,346
Ensembl chr 6:97,656,576...97,672,303 		JBrowse link
G Atp6v1e1 ATPase H+ transporting V1 subunit E1 involved_in ISO
IEA 		(PMID:28793259)
GO_REF:0000107 		RGD
Ensembl		 PMID:28793259 GO_REF:0000107 NCBI chr 4:155,694,534...155,716,660
Ensembl chr 4:154,022,358...154,044,584 		JBrowse link
G Atp6v1f ATPase H+ transporting V1 subunit F involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:59,033,020...59,035,980 JBrowse link
G Atp6v1g1 ATPase H+ transporting V1 subunit G1 involved_in IBA
ISO
IEA 		GO_REF:0000033
(PMID:28793259)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:28793259 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:81,976,959...81,983,139
Ensembl chr 5:76,961,499...76,969,463 		JBrowse link
G Atp6v1g1l1 ATPase H+ transporting V1 subunit G1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:29,165,387...29,165,686
Ensembl chr10:28,663,974...28,664,273 		JBrowse link
G Atp6v1g2 ATPase H+ transporting V1 subunit G2 involved_in IBA
ISO
IEA 		GO_REF:0000033
(PMID:28793259)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:28793259 GO_REF:0000033 GO_REF:0000107 NCBI chr20:3,592,374...3,595,986
Ensembl chr20:3,587,686...3,590,481 		JBrowse link
G Atp6v1g3 ATPase H+ transporting V1 subunit G3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:52,351,787...52,376,784
Ensembl chr13:49,794,222...49,825,247 		JBrowse link
G Atp6v1h ATPase H+ transporting V1 subunit H involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 5:19,176,849...19,282,516
Ensembl chr 5:14,378,257...14,537,962 		JBrowse link
G Clcn3 chloride voltage-gated channel 3 acts_upstream_of_or_within
involved_in 		ISO MGI:2447864 (PMID:21378974)
(PMID:11182090) 		RGD PMID:11182090 PMID:21378974 NCBI chr16:29,127,152...29,200,133
Ensembl chr16:29,127,419...29,200,119 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 acts_upstream_of_or_within ISO MGI:3051945 (PMID:19169251) RGD PMID:19169251 NCBI chr 1:104,786,172...104,798,049
Ensembl chr 1:95,649,745...95,661,588 		JBrowse link
regulation of synaptic vesicle lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc9a6 solute carrier family 9 member A6 involved_in IEP
IMP
IDA 		PMID:33372133 SynGO PMID:33372133 PMID:33372133 PMID:33372133 RGD:405650253, RGD:405650253, RGD:405650253 NCBI chr  X:139,468,045...139,524,111
Ensembl chr  X:134,420,756...134,485,375 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    homeostatic process 2032
      cellular homeostasis 996
        neuron cellular homeostasis 87
          synaptic vesicle lumen acidification 22
            negative regulation of synaptic vesicle lumen acidification 0
            positive regulation of synaptic vesicle lumen acidification 0
            regulation of synaptic vesicle lumen acidification + 1
Path 2
Term Annotations click to browse term
  biological_process 20543
    localization 5730
      establishment of localization 5080
        transport 4767
          transmembrane transport 1734
            monoatomic ion transmembrane transport 1113
              monoatomic cation transmembrane transport 946
                proton transmembrane transport 176
                  synaptic vesicle lumen acidification 22
                    negative regulation of synaptic vesicle lumen acidification 0
                    positive regulation of synaptic vesicle lumen acidification 0
                    regulation of synaptic vesicle lumen acidification + 1
paths to the root