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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of heterochromatin formation
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Accession:GO:0031445 term browser browse the term
Definition:Any process that modulates the frequency, rate, extent or location of heterochromatin formation.
Synonyms:exact_synonym: regulation of heterochromatin assembly


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regulation of heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:54,939,774...55,061,155
Ensembl chr12:54,940,336...55,061,133 		JBrowse link
negative regulation of DNA methylation-dependent heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3l DNA methyltransferase 3-like involved_in IMP (PMID:24074865) UniProt PMID:24074865 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
negative regulation of heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dyrk1a dual-specificity tyrosine phosphorylation regulated kinase 1a involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:94,370,770...94,496,378
Ensembl chr16:94,370,869...94,496,376 		JBrowse link
G Rlf rearranged L-myc fusion sequence acts_upstream_of_or_within IMP (PMID:25857663) MGI PMID:25857663 NCBI chr 4:121,003,080...121,072,318
Ensembl chr 4:121,002,570...121,072,281 		JBrowse link
negative regulation of rDNA heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr13:48,955,226...49,024,361
Ensembl chr13:48,955,226...49,024,595 		JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:150,303,621...150,416,855
Ensembl chr  X:150,303,668...150,416,855 		JBrowse link
positive regulation of heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr10:128,533,807...128,540,920
Ensembl chr10:128,533,808...128,540,900 		JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:150,268,544...150,325,686
Ensembl chr 1:150,268,589...150,325,686 		JBrowse link
regulation of rDNA heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28636
    cellular process 18394
      regulation of cellular process 12633
        regulation of cellular component organization 2822
          regulation of chromatin organization 29
            regulation of heterochromatin formation 10
              negative regulation of heterochromatin formation + 6
              positive regulation of heterochromatin formation + 2
              regulation of pericentric heterochromatin formation + 0
              regulation of rDNA heterochromatin formation + 3
              regulation of regulatory ncRNA-mediated heterochromatin formation + 0
              regulation of siRNA-independent facultative heterochromatin formation 0
              regulation of silent mating-type cassette heterochromatin formation + 0
Path 2
Term Annotations click to browse term
  biological_process 28636
    biological regulation 13449
      regulation of biological process 13008
        regulation of cellular process 12633
          regulation of metabolic process 6975
            regulation of biosynthetic process 5712
              regulation of macromolecule biosynthetic process 5493
                regulation of gene expression 5374
                  negative regulation of gene expression 1531
                    negative regulation of gene expression, epigenetic 231
                      heterochromatin formation 176
                        regulation of heterochromatin formation 10
                          negative regulation of heterochromatin formation + 6
                          positive regulation of heterochromatin formation + 2
                          regulation of pericentric heterochromatin formation + 0
                          regulation of rDNA heterochromatin formation + 3
                          regulation of regulatory ncRNA-mediated heterochromatin formation + 0
                          regulation of siRNA-independent facultative heterochromatin formation 0
                          regulation of silent mating-type cassette heterochromatin formation + 0
paths to the root