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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of chromatin organization
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Accession:GO:1902275 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of chromatin organization.
Synonyms:exact_synonym: regulation of chromatin organisation;   regulation of establishment or maintenance of chromatin architecture
 related_synonym: regulation of chromatin modification
 alt_id: GO:1903308


show annotations for term's descendants           Sort by:
 
regulation of chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh4 alkB homolog 4, lysine demethylase involved_in ISO (MGI:6323482|PMID:30982744) RGD PMID:30982744 MGI:6323482 NCBI chr12:20,524,030...20,529,947
Ensembl chr12:20,524,030...20,529,947 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISS
IBA
ISO		 GO_REF:0000107
GO_REF:0000024
PMID:21873635
(PMID:28622508)		 Ensembl
UniProt
RGD		 PMID:28622508 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO
IEA		 (PMID:33230297)
GO_REF:0000107		 RGD
Ensembl		 PMID:33230297 GO_REF:0000107 NCBI chr10:30,367,841...30,385,956
Ensembl chr10:30,370,727...30,385,944 		JBrowse link
G Mettl4 methyltransferase like 4 involved_in ISO (MGI:6323482|PMID:30982744) RGD PMID:30982744 MGI:6323482 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G Mki67 marker of proliferation Ki-67 involved_in ISO (MGI:5796066|PMID:26949251) RGD PMID:26949251 MGI:5796066 NCBI chr 1:190,496,319...190,522,983
Ensembl chr 1:190,496,319...190,522,762 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit involved_in ISO (PMID:31776511) RGD PMID:31776511 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase involved_in ISO (PMID:27141965)
(MGI:5816640|PMID:27141965)		 RGD PMID:27141965 MGI:5816640 NCBI chr 1:182,386,197...182,411,695
Ensembl chr 1:182,388,060...182,411,090 		JBrowse link
G Setd5 SET domain containing 5 involved_in ISO (MGI:5812827|PMID:27864380), (MGI:6279386|PMID:30455454), (MGI:6381850|PMID:31515109) RGD PMID:27864380 PMID:30455454 PMID:31515109 MGI:5812827 MGI:6279386 MGI:6381850 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894 		JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in ISO
IBA		 (PMID:27467129)
PMID:21873635		 RGD PMID:27467129 PMID:21873635 RGD:13792537 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482 		JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO (PMID:21496894) RGD PMID:21496894 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5285126|PMID:21496894)		 UniProt
RGD		 PMID:21496894 GO_REF:0000024 MGI:5285126 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in ISO (PMID:21496894) RGD PMID:21496894 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO (PMID:20129925) RGD PMID:20129925 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208 		JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410 		JBrowse link
positive regulation of chromatin assembly or disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in ISO (PMID:20855495) RGD PMID:20855495 NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976 		JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO
IBA		 (PMID:27732843)
PMID:21873635		 RGD PMID:27732843 PMID:21873635 RGD:13792537 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650 		JBrowse link
G Atf7ip2 activating transcription factor 7 interacting protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:5,403,099...5,445,989
Ensembl chr10:5,403,105...5,446,142 		JBrowse link
G Dnmt1 DNA methyltransferase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24623306)		 UniProt
Ensembl
RGD		 PMID:24623306 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G LOC120093070 PHD finger protein 11-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,526,380...33,549,382
Ensembl chr15:33,453,952...33,606,470 		JBrowse link
G LOC120093163 PHD finger protein 11-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,453,948...33,475,669
Ensembl chr15:33,453,952...33,606,470 		JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:28581500), (PMID:29211708)
(MGI:6271895|PMID:29728365)		 RGD PMID:28581500 PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr14:78,529,603...78,571,375
Ensembl chr14:78,527,009...78,571,343 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28581500), (PMID:29211708)		 UniProt
RGD		 PMID:28581500 PMID:29211708 GO_REF:0000024 NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810 		JBrowse link
G Pphln1 periphilin 1 involved_in ISO (PMID:28581500) RGD PMID:28581500 NCBI chr 7:124,538,594...124,629,985
Ensembl chr 7:124,538,627...124,629,985 		JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO
IBA		 (MGI:6271895|PMID:29728365)
PMID:21873635		 RGD PMID:29728365 PMID:21873635 MGI:6271895, RGD:13792537 NCBI chr 4:182,325,913...182,362,054
Ensembl chr 4:182,335,454...182,362,054 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA
ISO		 PMID:21873635
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
(PMID:24623306), (PMID:27732843)		 RGD PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 PMID:21873635 MGI:5440670 MGI:6271895, RGD:13792537 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506 		JBrowse link
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,553,657...33,606,586
Ensembl chr15:33,453,952...33,606,470 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IBA		 (PMID:28581500), (PMID:29211708)
PMID:21873635		 RGD PMID:28581500 PMID:29211708 PMID:21873635 RGD:13792537 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Trim28 tripartite motif-containing 28 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5440670|PMID:20164836)
(PMID:24623306)		 UniProt
RGD		 PMID:20164836 PMID:24623306 GO_REF:0000024 MGI:5440670 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) RGD PMID:20935635 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in ISO
IEA		 (PMID:22783022)
GO_REF:0000107		 RGD
Ensembl		 PMID:22783022 GO_REF:0000107 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192 		JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
ISS		 (PMID:20407419)
GO_REF:0000024		 RGD
UniProt		 PMID:20407419 GO_REF:0000024 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lmntd2 lamin tail domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:196,315,112...196,320,880
Ensembl chr 1:196,315,115...196,319,156 		JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 involved_in ISO (PMID:15674325) RGD PMID:15674325 NCBI chr 7:107,949,031...107,958,377
Ensembl chr 7:107,949,043...107,958,304 		JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA		 (PMID:26109053)
PMID:21873635		 RGD PMID:26109053 PMID:21873635 RGD:13792537 NCBI chr 1:97,531,495...97,549,633
Ensembl chr 1:97,531,508...97,549,581 		JBrowse link
regulation of chromatin assembly or disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlk1 tousled-like kinase 1 involved_in IBA
ISO		 PMID:21873635
(PMID:12660173)		 RGD PMID:12660173 PMID:21873635 RGD:13792537 NCBI chr 3:55,520,559...55,627,580
Ensembl chr 3:55,503,358...55,691,968 		JBrowse link
G Tlk2 tousled-like kinase 2 involved_in IBA
ISO		 PMID:21873635
(PMID:12660173)		 RGD PMID:12660173 PMID:21873635 RGD:13792537 NCBI chr10:90,154,449...90,248,562
Ensembl chr10:90,156,813...90,248,561 		JBrowse link
regulation of chromatin disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map1s microtubule-associated protein 1S involved_in IEA
ISO		 GO_REF:0000107
(PMID:12762840)		 Ensembl
RGD		 PMID:12762840 GO_REF:0000107 NCBI chr16:18,516,759...18,527,777
Ensembl chr16:18,517,574...18,527,988 		JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in ISO
IEA		 (PMID:22853951)
GO_REF:0000107		 RGD
Ensembl		 PMID:22853951 GO_REF:0000107 NCBI chr 5:153,209,053...153,251,632
Ensembl chr 5:153,209,053...153,251,632 		JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A involved_in ISO
IEA		 (PMID:33980486)
GO_REF:0000107		 RGD
Ensembl		 PMID:33980486 GO_REF:0000107 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:33980486) RGD PMID:33980486 NCBI chr 1:18,988,763...19,089,247
Ensembl chr 1:18,990,618...19,089,263 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) RGD PMID:33980486 NCBI chr19:24,151,136...24,154,475
Ensembl chr19:24,151,128...24,154,488 		JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07017902.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:27,225,434...27,225,910 JBrowse link
G AABR07026842.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07058017.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07061871.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303 		JBrowse link
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
ISO
ISS		 PMID:21873635
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267)
GO_REF:0000024		 RGD
UniProt		 PMID:17143267 PMID:22722204 PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5447615, RGD:13792537 NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861 		JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,421,825...56,422,277
Ensembl chr 8:56,421,825...56,422,277 		JBrowse link
G LOC120096627 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:69,456,777...69,460,079
Ensembl chr14:69,457,383...69,457,859 		JBrowse link
G LOC120096971 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:27,224,329...27,232,700
Ensembl chr15:27,225,434...27,225,910 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha involved_in ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO MGI:4129024 (MGI:5559953|PMID:24291790) RGD PMID:24291790 MGI:5559953 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
G Zfp42 zinc finger protein 42 acts_upstream_of_or_within ISO MGI:4125334 (MGI:4940138|PMID:21233130) RGD PMID:21233130 MGI:4940138 NCBI chr16:48,836,463...48,845,443
Ensembl chr16:48,836,648...48,845,401 		JBrowse link
G Zfp445 zinc finger protein 445 involved_in ISO (PMID:30602440)
UniProtKB:Q8C6P8 (MGI:6284037|PMID:30602440)		 RGD PMID:30602440 MGI:6284037 NCBI chr 8:122,453,175...122,473,355
Ensembl chr 8:122,454,328...122,473,286 		JBrowse link
G Zfp57 zinc finger protein 57 involved_in ISO UniProtKB:Q8R2V3 (MGI:6284037|PMID:30602440) RGD PMID:30602440 MGI:6284037 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846 		JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) RGD PMID:24071584 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      regulation of cellular process 12501
        regulation of cellular component organization 2552
          regulation of chromatin organization 57
            negative regulation of chromatin organization + 5
            positive regulation of chromatin organization + 17
            regulation of chromatin assembly or disassembly + 48
            regulation of heterochromatin organization + 40
            regulation of histone exchange + 0
Path 2
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular component organization or biogenesis 6736
        cellular component organization 6486
          organelle organization 3987
            chromosome organization 1036
              chromatin organization 594
                regulation of chromatin organization 57
                  negative regulation of chromatin organization + 5
                  positive regulation of chromatin organization + 17
                  regulation of chromatin assembly or disassembly + 48
                  regulation of heterochromatin organization + 40
                  regulation of histone exchange + 0
paths to the root