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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of heterochromatin assembly
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Accession:GO:0031445 term browser browse the term
Definition:Any process that modulates the frequency, rate, extent or location of heterochromatin formation.
Synonyms:exact_synonym: regulation of heterochromatin formation



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negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:122,553,809...122,564,180
Ensembl chr 6:122,553,801...122,564,180
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 involved_in IMP (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr 6:122,577,792...122,603,024
Ensembl chr 6:122,577,792...122,602,444
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:62,804,570...62,887,469
Ensembl chr10:62,804,570...62,908,996
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:48,801,750...48,870,885
Ensembl chr13:48,801,750...48,871,119
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:151,520,641...151,633,859
Ensembl chr  X:151,520,672...151,633,859
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 6:136,518,789...136,610,850
Ensembl chr 6:136,506,167...136,610,862
JBrowse link
G Atf7ip2 activating transcription factor 7 interacting protein 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:10,192,649...10,250,731
Ensembl chr16:10,192,712...10,251,478
JBrowse link
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:20,907,206...20,959,888
Ensembl chr 9:20,907,209...20,959,888
JBrowse link
G Morc2a microrchidia 2A involved_in ISO
IMP
(MGI:6271895|PMID:29728365) MGI
UniProt
PMID:29728365 GO_REF:0000096 MGI:4834177 MGI:6271895 NCBI chr11:3,649,189...3,690,477
Ensembl chr11:3,649,191...3,690,477
JBrowse link
G Morc2b microrchidia 2B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:33,135,588...33,150,499
Ensembl chr17:33,113,351...33,139,683
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:56,668,235...56,697,430
Ensembl chr14:56,668,248...56,697,430
JBrowse link
G Pphln1 periphilin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:93,398,345...93,491,913
Ensembl chr15:93,398,350...93,491,510
JBrowse link
G Resf1 retroelement silencing factor 1 involved_in IMP
IBA
(MGI:6271895|PMID:29728365)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:29728365 MGI:6201960 MGI:6271895 NCBI chr 6:149,309,409...149,335,663
Ensembl chr 6:149,309,414...149,335,663
JBrowse link
G Setdb1 SET domain, bifurcated 1 involved_in IBA
ISO
IMP
(MGI:6201960|PMID:21873635)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
GO_Central
MGI
UniProt
PMID:20164836 PMID:21873635 PMID:29728365 GO_REF:0000096 MGI:4834177 MGI:5440670 MGI:6201960 MGI:6271895 NCBI chr 3:95,323,525...95,357,202
Ensembl chr 3:95,323,525...95,357,202
JBrowse link
G Setdb2 SET domain, bifurcated 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:59,402,009...59,440,880
Ensembl chr14:59,402,009...59,440,884
JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:27,423,674...27,483,555
Ensembl chr14:27,428,834...27,483,555
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in ISO
IMP
(MGI:5440670|PMID:20164836) MGI
UniProt
PMID:20164836 GO_REF:0000096 MGI:4834177 MGI:5440670 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin-dependent kinase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:128,697,938...128,705,051
Ensembl chr10:128,697,939...128,705,031
JBrowse link
G Sin3a transcriptional regulator, SIN3A (yeast) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:57,071,991...57,128,368
Ensembl chr 9:57,072,040...57,128,366
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:150,392,802...150,449,935
Ensembl chr 1:150,392,838...150,449,935
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine (K)-specific demethylase 1A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:136,550,533...136,602,787
Ensembl chr 4:136,550,540...136,602,723
JBrowse link
G L3mbtl3 L3MBTL3 histone methyl-lysine binding protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:26,274,461...26,376,036
Ensembl chr10:26,274,468...26,375,971
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr17:35,506,032...35,510,777
Ensembl chr17:35,506,018...35,510,772
JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:83,997,516...84,000,415
Ensembl chr 8:83,997,501...84,000,409
Ensembl chr 8:83,997,501...84,000,409
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr13:56,073,622...56,135,626
Ensembl chr13:56,073,619...56,136,361
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28627
    cellular process 17671
      regulation of cellular process 12120
        regulation of cellular component biogenesis 1043
          regulation of chromatin assembly 28
            regulation of heterochromatin assembly 25
              negative regulation of heterochromatin assembly + 5
              positive regulation of heterochromatin assembly + 15
              regulation of DNA methylation-dependent heterochromatin assembly + 19
              regulation of heterochromatin assembly by small RNA + 0
              regulation of pericentric heterochromatin assembly + 0
              regulation of ribosomal DNA heterochromatin assembly + 3
              regulation of siRNA-independent facultative heterochromatin assembly 0
              regulation of silent mating-type cassette heterochromatin assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 28627
    cellular process 17671
      cellular component organization or biogenesis 6533
        cellular component organization 6339
          organelle organization 3862
            chromosome organization 1030
              chromatin organization 614
                regulation of gene expression, epigenetic 213
                  negative regulation of gene expression, epigenetic 129
                    heterochromatin assembly 122
                      regulation of heterochromatin assembly 25
                        negative regulation of heterochromatin assembly + 5
                        positive regulation of heterochromatin assembly + 15
                        regulation of DNA methylation-dependent heterochromatin assembly + 19
                        regulation of heterochromatin assembly by small RNA + 0
                        regulation of pericentric heterochromatin assembly + 0
                        regulation of ribosomal DNA heterochromatin assembly + 3
                        regulation of siRNA-independent facultative heterochromatin assembly 0
                        regulation of silent mating-type cassette heterochromatin assembly + 0
paths to the root