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ONTOLOGY REPORT - ANNOTATIONS

Term:dorsal/ventral neural tube patterning
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Accession:GO:0021904 term browser browse the term
Definition:The process in which the neural tube is regionalized in the dorsoventral axis.
Synonyms:exact_synonym: dorsoventral neural tube patterning

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dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:15218525) MGI PMID:15218525 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:18590716)
(PMID:18003640)		 MGI PMID:18003640 PMID:18590716 NCBI chrNW_004955524:3,037,825...3,044,296
Ensembl chrNW_004955524:3,036,953...3,044,296 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:23383217)
(PMID:18590716)
(PMID:9226455)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chrNW_004955415:29,982,940...29,987,093
Ensembl chrNW_004955415:29,982,940...29,986,255 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chrNW_004955432:727,784...729,096 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:18590716), (PMID:19286674)
(PMID:9247260)		 MGI PMID:9247260 PMID:18590716 PMID:19286674 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO (PMID:9226455) MGI PMID:9226455 NCBI chrNW_004955438:17,653,149...17,655,091
Ensembl chrNW_004955438:17,653,271...17,656,878 		JBrowse link
G Kif3a kinesin family member 3A involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
(PMID:18590716)
(PMID:18590716), (PMID:19286674)		 BHF-UCL
MGI		 PMID:18590716 PMID:19286674 PMID:21209331 MGI:4888042 NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004955579:51,862...74,985 JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004955527:474,450...573,869
Ensembl chrNW_004955527:474,403...574,689 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556) UniProt PMID:7720556 MGI:69552 NCBI chrNW_004955502:2,947,170...2,980,634
Ensembl chrNW_004955502:2,950,562...2,980,634 		JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chrNW_004955464:13,579,828...13,795,266
Ensembl chrNW_004955464:13,580,742...13,801,837 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
(PMID:17442700), (PMID:18590716)
(PMID:17504941)		 BHF-UCL
MGI		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 MGI:4888042 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004955482:7,504,554...7,533,605
Ensembl chrNW_004955482:7,504,532...7,528,542 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:8299937) MGI PMID:8299937 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr161 G protein-coupled receptor 161 involved_in ISO (MGI:5468365|PMID:23332756) UniProt PMID:23332756 MGI:5468365 NCBI chrNW_004955462:8,981,729...9,034,009
Ensembl chrNW_004955462:8,981,157...9,028,946 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:20159594)
(PMID:17395647)		 MGI PMID:17395647 PMID:20159594 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:20159594)
(PMID:17395647)		 MGI PMID:17395647 PMID:20159594 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004955436:3,385,216...3,542,497
Ensembl chrNW_004955436:3,386,180...3,540,933 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19223390) MGI PMID:19223390 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12362
    multicellular organismal process 6191
      pattern specification process 445
        regionalization 411
          neural tube patterning 44
            dorsal/ventral neural tube patterning 25
              smoothened signaling pathway involved in dorsal/ventral neural tube patterning + 7
Path 2
Term Annotations click to browse term
  biological_process 12362
    developmental process 5862
      anatomical structure development 5550
        multicellular organism development 4560
          embryo development 1224
            embryo development ending in birth or egg hatching 821
              chordate embryonic development 805
                neural tube development 192
                  neural tube patterning 44
                    dorsal/ventral neural tube patterning 25
                      smoothened signaling pathway involved in dorsal/ventral neural tube patterning + 7
paths to the root