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ONTOLOGY REPORT - ANNOTATIONS


Term:neural tube development
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Accession:GO:0021915 term browser browse the term
Definition:The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium.


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neural tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 involved_in ISO (PMID:16237707) RGD PMID:16237707 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO MGI:3715977 (MGI:3715542|PMID:17589504) RGD PMID:17589504 MGI:3715542 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:165,382,279...165,480,088
Ensembl chr 1:165,382,690...165,479,655
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader ISO MGI:3574034 (MGI:5295885|PMID:22045912) RGD PMID:22045912 MGI:5295885 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Dact1 dishevelled-binding antagonist of beta-catenin 1 involved_in ISO (PMID:22610794) RGD PMID:22610794 NCBI chr 6:93,740,440...93,751,003
Ensembl chr 6:93,740,586...93,749,809
JBrowse link
G Dchs1 dachsous cadherin-related 1 ISO MGI:4867020 (MGI:4939936|PMID:21303848) RGD PMID:21303848 MGI:4939936 NCBI chr 1:170,594,981...170,629,062
Ensembl chr 1:170,594,822...170,628,915
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:8817329) RGD PMID:8817329 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Epha2 Eph receptor A2 ISO MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:3042750 (MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:3806189 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Gdf7 growth differentiation factor 7 ISO MGI:2386906 (MGI:1353705|PMID:10693795) RGD PMID:10693795 MGI:1353705 NCBI chr 6:33,496,596...33,507,626
Ensembl chr 6:33,503,217...33,507,542
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:3834146 (MGI:3833793|PMID:19056373) RGD PMID:19056373 MGI:3833793 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:52587|PMID:8387379) RGD PMID:8387379 MGI:52587 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 involved_in ISO
IBA
MGI:4942413 (MGI:4943100|PMID:21377456)
PMID:21873635
RGD PMID:21377456, PMID:21873635, PMID:21873635 MGI:4943100, RGD:13792537, RGD:13792537 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO MGI:104876|MGI:104877 (MGI:1855903|PMID:10804175), (MGI:2149154|PMID:11500373) RGD PMID:10804175 PMID:11500373 MGI:1855903 MGI:2149154 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes3 hes family bHLH transcription factor 3 ISO MGI:104853 (MGI:2149154|PMID:11500373) RGD PMID:11500373 MGI:2149154 NCBI chr 5:169,463,196...169,469,795
Ensembl chr 5:169,464,989...169,467,153
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
MGI:104853 (MGI:1855903|PMID:10804175)
UniProt
RGD
PMID:10804175 GO_REF:0000024 MGI:1855903 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:2176180|MGI:4420980 (MGI:4420527|PMID:19521792) RGD PMID:19521792 MGI:4420527 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Inka1 inka box actin regulator 1 ISO MGI:4438483 (MGI:4437492|PMID:20175189) RGD PMID:20175189 MGI:4437492 NCBI chr 8:116,763,149...116,764,839
Ensembl chr 8:116,763,001...116,764,780
JBrowse link
G Intu inturned planar cell polarity protein involved_in IEA
ISO
GO_REF:0000107
(MGI:5644615|PMID:25774014)
Ensembl
RGD
PMID:25774014 GO_REF:0000107 MGI:5644615 NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
JBrowse link
G Itpk1 inositol-tetrakisphosphate 1-kinase ISO MGI:3587933 (MGI:3849649|PMID:19482943) RGD PMID:19482943 MGI:3849649 NCBI chr 6:126,448,920...126,582,188
Ensembl chr 6:126,450,139...126,582,134
JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:4126347|MGI:5516011 (MGI:5515940|PMID:23028370) RGD PMID:23028370 MGI:5515940 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:2181727 (MGI:1337724|PMID:10330409) RGD PMID:10330409 MGI:1337724 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:98958 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839485 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Nf1 neurofibromin 1 involved_in IEA
ISO
GO_REF:0000107
MGI:97487 (MGI:1342174|PMID:10419687)
Ensembl
RGD
PMID:10419687 GO_REF:0000107 MGI:1342174 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Nog noggin ISO MGI:1862000 (MGI:1205964|PMID:9585504) RGD PMID:9585504 MGI:1205964 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Notch1 notch receptor 1 ISO MGI:1857230 (MGI:72973|PMID:7789282) RGD PMID:7789282 MGI:72973 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Nup133 nucleoporin 133 ISO MGI:3578539 (MGI:3798324|PMID:18539113) RGD PMID:18539113 MGI:3798324 NCBI chr19:56,681,965...56,731,404
Ensembl chr19:56,681,979...56,731,372
JBrowse link
G Pax3 paired box 3 ISO MGI:97306 (MGI:1342174|PMID:10419687) RGD PMID:10419687 MGI:1342174 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO MGI:3769591 (MGI:3835979|PMID:19114063) RGD PMID:19114063 MGI:3835979 NCBI chr 2:200,484,245...200,513,564
Ensembl chr 2:200,484,246...200,513,564
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,914,057...13,962,008
Ensembl chr10:13,915,214...13,962,008
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO MGI:3620600|MGI:3620601 (MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:3618677 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Plxna2 plexin A2 ISO (PMID:19666519) RGD PMID:19666519 NCBI chr13:113,373,569...113,570,774
Ensembl chr13:113,373,578...113,571,648
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO MGI:2139360 (MGI:3826724|PMID:18818376) RGD PMID:18818376 MGI:3826724 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Sall2 spalt-like transcription factor 2 ISO MGI:3828110 (MGI:3826724|PMID:18818376) RGD PMID:18818376 MGI:3826724 NCBI chr15:28,728,471...28,746,042
Ensembl chr15:28,728,140...28,746,042
JBrowse link
G Sall4 spalt-like transcription factor 4 ISO MGI:1354373|MGI:1889585 (MGI:3826724|PMID:18818376) RGD PMID:18818376 MGI:3826724 NCBI chr 3:165,520,155...165,538,176
Ensembl chr 3:165,520,392...165,537,940
JBrowse link
G Sema3c semaphorin 3C ISO (PMID:19666519) RGD PMID:19666519 NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO MGI:108078 (MGI:4429763|PMID:19850029) RGD PMID:19850029 MGI:4429763 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:892014 (MGI:4429763|PMID:19850029) RGD PMID:19850029 MGI:4429763 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:4440463 (MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tcf7 transcription factor 7 ISO MGI:1202879 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:98507 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (MGI:74339|PMID:7600998) RGD PMID:7600998 MGI:74339 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISS
ISO
GO_REF:0000024
(MGI:5319563|PMID:22508726)
UniProt
RGD
PMID:22508726 GO_REF:0000024 MGI:5319563 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Ttbk2 tau tubulin kinase 2 ISO MGI:5496675 (MGI:5493390|PMID:23141541) RGD PMID:23141541 MGI:5493390 NCBI chr 3:112,677,932...112,789,615
Ensembl chr 3:112,684,152...112,789,289
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wnt5a Wnt family member 5A ISO MGI:1298218 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 ISO MGI:3050540 (MGI:3047495|PMID:15226444) RGD PMID:15226444 MGI:3047495 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 ISO
IEA
MGI:5056374 (MGI:5050793|PMID:21515572)
GO_REF:0000107
RGD
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr16:48,845,011...48,863,249
Ensembl chr16:48,845,012...48,863,204
JBrowse link
G Folr1 folate receptor alpha ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO
IEA
MGI:5056365 (MGI:5050793|PMID:21515572)
GO_REF:0000107
RGD
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like ISO MGI:4124253|MGI:4128888 (MGI:6101898|PMID:26787558) RGD PMID:26787558 MGI:6101898 NCBI chr20:14,287,470...14,393,879
Ensembl chr20:14,287,457...14,393,793
JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A ISO (MGI:3762244|PMID:17565372) RGD PMID:17565372 MGI:3762244 NCBI chr16:21,177,793...21,267,768
Ensembl chr16:21,178,138...21,268,504
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:1888387 (MGI:80520|PMID:8622765) RGD PMID:8622765 MGI:80520 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:3046395|PMID:15218525)
Ensembl
RGD
PMID:15218525 GO_REF:0000107 MGI:3046395 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:107689|MGI:3042750|MGI:3775614|MGI:95728 (MGI:3774974|PMID:18003640), (MGI:3806189|PMID:18590716) RGD PMID:18003640 PMID:18590716 MGI:3774974 MGI:3806189 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Foxa1 forkhead box A1 involved_in IEA
ISO
GO_REF:0000107
MGI:1347476 (MGI:5486225|PMID:23383217)
Ensembl
RGD
PMID:23383217 GO_REF:0000107 MGI:5486225 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:1347472|MGI:95841 (MGI:3806189|PMID:18590716), (MGI:5486225|PMID:23383217), (MGI:894511|PMID:9226455) RGD PMID:9226455 PMID:18590716 PMID:23383217 MGI:3806189 MGI:5486225 MGI:894511 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:3711070|MGI:98297 (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) RGD PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674), (MGI:894564|PMID:9247260) RGD PMID:9247260 PMID:18590716 PMID:19286674 MGI:3806189 MGI:3841503 MGI:894564 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gsc goosecoid homeobox ISO MGI:1347476 (MGI:894511|PMID:9226455) RGD PMID:9226455 MGI:894511 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:1341070|MGI:1861960|MGI:95728 (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674), (MGI:4888042|PMID:21209331) RGD PMID:18590716 PMID:19286674 PMID:21209331 MGI:3806189 MGI:3841503 MGI:4888042 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 ISO (MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:3806189 NCBI chr 4:2,376,350...2,381,308
Ensembl chr 4:2,376,958...2,381,271
JBrowse link
G Pax7 paired box 7 ISO (MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:3806189 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Psen1 presenilin 1 ISO MGI:109284 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 ISO MGI:1202717 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Ptch1 patched 1 ISO MGI:1857447 (MGI:1095757|PMID:9262482) RGD PMID:9262482 MGI:1095757 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO (MGI:69552|PMID:7720556) RGD PMID:7720556 MGI:69552 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Rnf220 ring finger protein 220 ISO MGI:6393918 (MGI:6220747|PMID:30177510) RGD PMID:30177510 MGI:6220747 NCBI chr 5:136,129,457...136,351,752
Ensembl chr 5:136,129,425...136,166,786
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
GO_REF:0000107
MGI:95655 (MGI:3710017|PMID:17442700), (MGI:3710451|PMID:17504941), (MGI:3806189|PMID:18590716), (MGI:4888042|PMID:21209331)
Ensembl
RGD
PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 GO_REF:0000107 MGI:3710017 MGI:3710451 MGI:3806189 MGI:4888042 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
GO_REF:0000107
MGI:2176255 (MGI:3806189|PMID:18590716)
Ensembl
RGD
PMID:18590716 GO_REF:0000107 MGI:3806189 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tctn1 tectonic family member 1 ISO MGI:3716885 (MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1857489 (MGI:64780|PMID:8299937) RGD PMID:8299937 MGI:64780 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 ISO MGI:1915838 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:1857642 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
floor plate development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cby1 chibby family member 1, beta catenin antagonist ISO MGI:1919757 (MGI:6149643|PMID:29487109) RGD PMID:29487109 MGI:6149643 NCBI chr 7:120,891,930...120,898,318
Ensembl chr 7:120,891,940...120,897,687
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1-like ISO MGI:1920989 (MGI:6149643|PMID:29487109) RGD PMID:29487109 MGI:6149643 NCBI chr 8:107,875,659...107,916,298
Ensembl chr 8:107,875,991...107,916,294
JBrowse link
G Ferd3l Fer3-like bHLH transcription factor ISO MGI:4460989 (MGI:4454589|PMID:20460368) RGD PMID:20460368 MGI:4454589 NCBI chr 6:53,371,706...53,372,596
Ensembl chr 6:53,371,706...53,372,584
JBrowse link
G Foxb1 forkhead box B1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3771770|PMID:18064677)
UniProt
RGD
PMID:18064677 GO_REF:0000024 MGI:3771770 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
floor plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Cluap1 clusterin associated protein 1 involved_in ISO
IEA
MGI:4363468 (MGI:5488668|PMID:23351563)
GO_REF:0000107
RGD
Ensembl
PMID:23351563 GO_REF:0000107 MGI:5488668 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:1276795|PMID:9636069), (MGI:1277040|PMID:9655799) RGD PMID:9636069 PMID:9655799 MGI:1276795 MGI:1277040 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
floor plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 involved_in IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1856158 (MGI:892757|PMID:9169845)
Ensembl
RGD
PMID:9169845 GO_REF:0000107 MGI:892757 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 ISO MGI:1857163 (MGI:3525936|PMID:15607945) RGD PMID:15607945 MGI:3525936 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:2150347 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:1857634 (MGI:3624192|PMID:16651541) RGD PMID:16651541 MGI:3624192 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in ISO
IBA
MGI:2156191 (MGI:1891551|PMID:11029008), (MGI:4413372|PMID:19795512)
PMID:21873635
RGD PMID:11029008 PMID:19795512, PMID:21873635, PMID:21873635 MGI:1891551 MGI:4413372, RGD:13792537, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:1857490 (MGI:59176|PMID:2205396) RGD PMID:2205396 MGI:59176 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 IEA
ISO
GO_REF:0000107
(MGI:3578570|PMID:15857913)
Ensembl
RGD
PMID:15857913 GO_REF:0000107 MGI:3578570 NCBI chr 5:126,511,339...126,649,830
Ensembl chr 5:126,511,350...126,648,661
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 ISO MGI:1856382 (MGI:76584|PMID:8555108) RGD PMID:8555108 MGI:76584 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 ISO MGI:1857634 (MGI:3624192|PMID:16651541) RGD PMID:16651541 MGI:3624192 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO
GO_REF:0000107
MGI:104877 (MGI:2149154|PMID:11500373)
Ensembl
RGD
PMID:11500373 GO_REF:0000107 MGI:2149154 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes3 hes family bHLH transcription factor 3 ISO MGI:104853 (MGI:2149134|PMID:11522634) RGD PMID:11522634 MGI:2149134 NCBI chr 5:169,463,196...169,469,795
Ensembl chr 5:169,464,989...169,467,153
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO MGI:98958 (MGI:4830282|PMID:19056682) RGD PMID:19056682 MGI:4830282 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 ISO MGI:108075|MGI:99833 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Gpr161 G protein-coupled receptor 161 ISO (MGI:5468365|PMID:23332756) RGD PMID:23332756 MGI:5468365 NCBI chr13:83,530,389...83,576,117
Ensembl chr13:83,531,018...83,571,505
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in IEA
ISO
GO_REF:0000107
MGI:97760 (MGI:5308523|PMID:22007132)
Ensembl
RGD
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta ISO MGI:97592 (MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:5308523 NCBI chr 2:252,602,197...252,691,886
Ensembl chr 2:252,605,307...252,691,886
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:4840420 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO MGI:4129326 (MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:5298450 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3844764|PMID:19334287) RGD PMID:19334287 MGI:3844764 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 involved_in IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:3818454 (MGI:3818102|PMID:18801334)
Ensembl
RGD
PMID:18801334, PMID:21873635, PMID:21873635 GO_REF:0000107 MGI:3818102, RGD:13792537, RGD:13792537 NCBI chr 5:154,831,697...154,907,646
Ensembl chr 5:154,868,534...154,907,634
JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 ISO UniProtKB:P23359 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO UniProtKB:P49003 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA
ISO
GO_REF:0000107
MGI:1857719 (MGI:1337194|PMID:10328919)
Ensembl
RGD
PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 CECR2, histone acetyl-lysine reader ISO MGI:3574034 (MGI:4880797|PMID:21246654) RGD PMID:21246654 MGI:4880797 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Cfl1 cofilin 1 ISO MGI:3574399 (MGI:3530675|PMID:15649475) RGD PMID:15649475 MGI:3530675 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A ISO (MGI:3762244|PMID:17565372) RGD PMID:17565372 MGI:3762244 NCBI chr16:21,177,793...21,267,768
Ensembl chr16:21,178,138...21,268,504
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:3522498 (MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO MGI:87860 (MGI:1327082|PMID:9883720) RGD PMID:9883720 MGI:1327082 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO MGI:87859 (MGI:1327082|PMID:9883720) RGD PMID:9883720 MGI:1327082 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Adm adrenomedullin ISO MGI:2176598 (MGI:3689296|PMID:16981008) RGD PMID:16981008 MGI:3689296 NCBI chr 1:175,443,189...175,447,260
Ensembl chr 1:175,445,088...175,447,259
JBrowse link
G Alx1 ALX homeobox 1 ISO MGI:1857553 (MGI:81193|PMID:8673125) RGD PMID:8673125 MGI:81193 NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 ISO MGI:1888997 (MGI:2149166|PMID:11504943), (MGI:893797|PMID:9216040) RGD PMID:9216040 PMID:11504943 MGI:2149166 MGI:893797 NCBI chr 7:31,699,309...31,784,192
Ensembl chr 7:31,699,885...31,784,192
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 involved_in IEA
ISO
GO_REF:0000107
MGI:2448591 (MGI:1926242|PMID:11044403)
Ensembl
RGD
PMID:11044403 GO_REF:0000107 MGI:1926242 NCBI chr 1:78,456,409...78,573,374
Ensembl chr 1:78,456,409...78,573,374
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO MGI:5469314 (MGI:5466629|PMID:23129809) RGD PMID:23129809 MGI:5466629 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO MGI:3055492 (MGI:3607949|PMID:16170314) RGD PMID:16170314 MGI:3607949 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bcl10 BCL10, immune signaling adaptor involved_in ISS
ISO
PMID:11163238
(MGI:1930354|PMID:11163238)
RGD PMID:11163238, PMID:11163238, PMID:11163238 MGI:1930354, RGD:734638, RGD:734638 NCBI chr 2:251,805,392...251,814,957
Ensembl chr 2:251,805,392...251,814,957
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:4429763|PMID:19850029)
Ensembl
RGD
PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Brd2 bromodomain containing 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:3,910,555...3,921,074
Ensembl chr20:3,910,555...3,917,426
Ensembl chr20:3,910,555...3,917,426
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A ISO MGI:5708063 (MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:5696765 NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
JBrowse link
G Cdk20 cyclin-dependent kinase 20 ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader ISO MGI:2135272|MGI:3574034|MGI:4829945 (MGI:3530173|PMID:15640247), (MGI:4822542|PMID:20589882), (MGI:4880797|PMID:21246654) RGD PMID:15640247 PMID:20589882 PMID:21246654 MGI:3530173 MGI:4822542 MGI:4880797 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 ISO MGI:107926|MGI:2135272 (MGI:2667273|PMID:12842012), (MGI:3703464|PMID:17229766) RGD PMID:12842012 PMID:17229766 MGI:2667273 MGI:3703464 NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2385355 (MGI:2384266|PMID:12149478) RGD PMID:12149478 MGI:2384266 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cluap1 clusterin associated protein 1 involved_in ISO
IEA
MGI:5523142 (MGI:5509110|PMID:23742838)
GO_REF:0000107
RGD
Ensembl
PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO
GO_REF:0000107
MGI:2135272 (MGI:2676511|PMID:14512015)
Ensembl
RGD
PMID:14512015 GO_REF:0000107 MGI:2676511 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Deaf1 DEAF1 transcription factor ISS
ISO
GO_REF:0000024
(MGI:3029622|PMID:14966286)
UniProt
RGD
PMID:14966286 GO_REF:0000024 MGI:3029622 NCBI chr 1:214,283,787...214,317,466
Ensembl chr 1:214,283,790...214,317,466
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein ISO MGI:3529997 (MGI:3529660|PMID:15710412) RGD PMID:15710412 MGI:3529660 NCBI chr16:58,776,489...59,247,752
Ensembl chr16:59,077,574...59,247,754
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:2429760 (MGI:2389015|PMID:12421720) RGD PMID:12421720 MGI:2389015 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Enah ENAH, actin regulator ISO MGI:109268|MGI:97549 (MGI:1331576|PMID:10069337), (MGI:3054149|PMID:15371503) RGD PMID:10069337 PMID:15371503 MGI:1331576 MGI:3054149 NCBI chr13:100,297,421...100,415,335
Ensembl chr13:100,300,054...100,414,226
JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISO
ISS
(PMID:21840926)
GO_REF:0000024
MGI:4346364 (MGI:4367921|PMID:19877275), (MGI:4438317|PMID:19767740), (MGI:5296277|PMID:21840926)
RGD
UniProt
PMID:19767740 PMID:19877275 PMID:21840926 GO_REF:0000024 MGI:4367921 MGI:4438317 MGI:5296277 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Fzd3 frizzled class receptor 3 ISO MGI:108474 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr15:48,601,259...48,670,257
Ensembl chr15:48,601,266...48,670,257
JBrowse link
G Fzd6 frizzled class receptor 6 ISO MGI:108476 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr 7:77,898,329...77,931,034
Ensembl chr 7:77,899,322...77,931,029
JBrowse link
G Glmn glomulin, FKBP associated protein ISO MGI:3817643 (MGI:5320488|PMID:22405651) RGD PMID:22405651 MGI:5320488 NCBI chr14:3,204,390...3,247,703
Ensembl chr14:3,204,390...3,247,695
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO MGI:4331210 (MGI:4835348|PMID:20654612), (MGI:4867118|PMID:20978075), (MGI:4947318|PMID:21262862) RGD PMID:20654612 PMID:20978075 PMID:21262862 MGI:4835348 MGI:4867118 MGI:4947318 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO (MGI:3689640|PMID:16949565), (MGI:4835348|PMID:20654612) RGD PMID:16949565 PMID:20654612 MGI:3689640 MGI:4835348 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 ISO MGI:2137552 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804), (MGI:3714713|PMID:17442300) RGD PMID:9636176 PMID:15755804 PMID:17442300 MGI:1267118 MGI:3577662 MGI:3714713 NCBI chr 6:72,509,658...72,596,285
Ensembl chr 6:72,510,255...72,596,446
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:3827087 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:3829198 (MGI:3828200|PMID:18930042) RGD PMID:18930042 MGI:3828200 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift57 intraflagellar transport 57 ISO MGI:3707373 (MGI:3703110|PMID:17027958) RGD PMID:17027958 MGI:3703110 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Kat2a lysine acetyltransferase 2A ISO MGI:3711317 (MGI:3709911|PMID:17325035) RGD PMID:17325035 MGI:3709911 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G Kdm2a lysine demethylase 2A ISO (MGI:5615026|PMID:25463925) RGD PMID:25463925 MGI:5615026 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294
JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Kif20b kinesin family member 20B ISO MGI:3578531 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr 1:253,220,038...253,275,523
Ensembl chr 1:253,221,812...253,275,490
JBrowse link
G Lhx2 LIM homeobox 2 involved_in ISO
IEA
MGI:1890208 (MGI:2154554|PMID:11719201)
GO_REF:0000107
RGD
Ensembl
PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Lias lipoic acid synthetase ISO MGI:3578174 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr14:44,507,217...44,524,287
Ensembl chr14:44,507,218...44,524,252
JBrowse link
G Lmo4 LIM domain only 4 ISO MGI:3035827|MGI:3574586 (MGI:3029621|PMID:14966285), (MGI:3573996|PMID:15691703), (MGI:3689640|PMID:16949565) RGD PMID:14966285 PMID:15691703 PMID:16949565 MGI:3029621 MGI:3573996 MGI:3689640 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
G LOC100909544 bromodomain-containing protein 2-like ISO MGI:3840071 (MGI:6120662|PMID:19362612) RGD PMID:19362612 MGI:6120662 NCBI chr20:3,910,555...3,918,348
Ensembl chr20:3,910,555...3,917,426
JBrowse link
G LOC108348112 bromodomain-containing protein 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:5,262,742...5,269,337
Ensembl chr20:5,262,120...5,269,337
JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:5603707|PMID:24639464)
Ensembl
UniProt
RGD
PMID:24639464 GO_REF:0000024 GO_REF:0000107 MGI:5603707 NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in ISO
IBA
MGI:1861309|MGI:2673982|MGI:4415718|MGI:98958 (MGI:1347661|PMID:10545599), (MGI:3055483|PMID:15469977), (MGI:4413372|PMID:19795512), (MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512, PMID:21873635, PMID:21873635 MGI:1347661 MGI:3055483 MGI:4413372 MGI:4413396 MGI:61254, RGD:13792537, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839484 (MGI:4839483|PMID:20630950) RGD PMID:20630950 MGI:4839483 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4410614|MGI:4433029 (MGI:4367169|PMID:19776033), (MGI:5487695|PMID:23454480)
Ensembl
RGD
PMID:19776033 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:5487695 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO (MGI:5503248|PMID:23704330) RGD PMID:23704330 MGI:5503248 NCBI chr 6:99,282,850...99,350,367
Ensembl chr 6:99,282,850...99,350,340
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,529,092...40,719,232
Ensembl chr 1:40,529,045...40,719,391
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO (PMID:25855017), (PMID:29222906) RGD PMID:25855017 PMID:29222906 NCBI chr 5:164,844,642...164,864,360
Ensembl chr 5:164,845,925...164,860,910
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nog noggin involved_in IEA
ISO
GO_REF:0000107
MGI:1856173|MGI:1862000 (MGI:3640733|PMID:16712836)
Ensembl
RGD
PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase ISO MGI:3578528 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr11:74,717,600...74,793,902
Ensembl chr11:74,720,254...74,793,803
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pax3 paired box 3 ISO MGI:3043030 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Pfn1 profilin 1 ISO MGI:108360 (MGI:1331576|PMID:10069337) RGD PMID:10069337 MGI:1331576 NCBI chr10:57,273,003...57,275,708
Ensembl chr10:57,273,005...57,275,708
JBrowse link
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:3719969 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
JBrowse link
G Plxnb2 plexin B2 ISO (MGI:3712712|PMID:17554007) RGD PMID:17554007 MGI:3712712 NCBI chr 7:130,135,484...130,161,568
Ensembl chr 7:130,135,464...130,151,880
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:21901791)
Ensembl
RGD
PMID:21901791 GO_REF:0000107 NCBI chr 7:134,702,964...134,799,437
Ensembl chr 7:134,702,964...134,722,215
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha IEA
ISO
GO_REF:0000107
MGI:97760 (MGI:5308523|PMID:22007132)
Ensembl
RGD
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta ISO MGI:97592 (MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:5308523 NCBI chr 2:252,602,197...252,691,886
Ensembl chr 2:252,605,307...252,691,886
JBrowse link
G Ptch1 patched 1 ISO MGI:1857447 (MGI:1095757|PMID:9262482) RGD PMID:9262482 MGI:1095757 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO MGI:2135272|MGI:3046905|MGI:3640803 (MGI:3046397|PMID:15229603), (MGI:4830023|PMID:20704721) RGD PMID:15229603 PMID:20704721 MGI:3046397 MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO MGI:2137533 (MGI:1267118|PMID:9636176), (MGI:69552|PMID:7720556) RGD PMID:7720556 PMID:9636176 MGI:1267118 MGI:69552 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Rala RAS like proto-oncogene A ISO (MGI:5504565|PMID:23063435) RGD PMID:23063435 MGI:5504565 NCBI chr17:49,676,073...49,729,133
Ensembl chr17:49,714,294...49,727,664
JBrowse link
G Rara retinoic acid receptor, alpha ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:97856 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a ISO MGI:3029714 (MGI:3027667|PMID:14749425) RGD PMID:14749425 MGI:3027667 NCBI chr 1:134,699,053...134,742,512
Ensembl chr 1:134,699,299...134,742,514
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 ISO MGI:1100883|MGI:2135272 (MGI:3703464|PMID:17229766) RGD PMID:17229766 MGI:3703464 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Rps7 ribosomal protein S7 ISO MGI:3043039 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr 6:47,899,525...47,904,389
Ensembl chr 6:47,899,525...47,904,437
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO MGI:2139360 (MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:3698636 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Sall4 spalt-like transcription factor 4 ISO MGI:1889585|MGI:3699175 (MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:3698636 NCBI chr 3:165,520,155...165,538,176
Ensembl chr 3:165,520,392...165,537,940
JBrowse link
G Scrib scribble planar cell polarity protein involved_in ISO (PMID:22095531)
MGI:1889322|MGI:2135272|MGI:5056373 (MGI:4819429|PMID:20643356), (MGI:5050793|PMID:21515572)
RGD PMID:20643356 PMID:21515572 PMID:22095531 MGI:4819429 MGI:5050793 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sdc4 syndecan 4 ISO MGI:2135272 (MGI:5498591|PMID:23760952) RGD PMID:23760952 MGI:5498591 NCBI chr 3:160,872,503...160,891,190
Ensembl chr 3:160,872,503...160,891,190
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:2135272|MGI:4440621 (MGI:4438817|PMID:19966784), (MGI:4439427|PMID:20215345) RGD PMID:19966784 PMID:20215345 MGI:4438817 MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Sema4c semaphorin 4C ISO (MGI:4881530|PMID:21122816) RGD PMID:21122816 MGI:4881530 NCBI chr 9:43,129,413...43,140,442
Ensembl chr 9:43,129,415...43,139,870
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO MGI:108078 (MGI:4429763|PMID:19850029) RGD PMID:19850029 MGI:4429763 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:892014 (MGI:4429763|PMID:19850029) RGD PMID:19850029 MGI:4429763 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Shroom3 shroom family member 3 ISO MGI:1889778 (MGI:3610718|PMID:16249236) RGD PMID:16249236 MGI:3610718 NCBI chr14:16,622,767...16,903,265
Ensembl chr14:16,622,760...16,903,242
JBrowse link
G Ski SKI proto-oncogene ISO MGI:2177555 (MGI:1095997|PMID:9284043) RGD PMID:9284043 MGI:1095997 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 ISO MGI:1338031|MGI:1338881 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 3:111,049,132...111,061,991
Ensembl chr 3:111,049,118...111,062,011
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 ISO MGI:1338033|MGI:1338881|MGI:2156187 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 1:87,199,373...87,221,826
Ensembl chr 1:87,199,313...87,221,892
JBrowse link
G St14 ST14 transmembrane serine protease matriptase ISO MGI:1338031|MGI:1338033 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 8:32,240,113...32,280,813
Ensembl chr 8:32,240,133...32,280,869
JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:3512046 (MGI:3604917|PMID:16155214) RGD PMID:16155214 MGI:3604917 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Tbxt T-box transcription factor T ISO MGI:1856158 (MGI:3701028|PMID:16835439) RGD PMID:16835439 MGI:3701028 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tead2 TEA domain transcription factor 2 ISO MGI:3763367 (MGI:3763398|PMID:17868131) RGD PMID:17868131 MGI:3763398 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:2176682 (MGI:1313057|PMID:9811866), (MGI:80519|PMID:8622766) RGD PMID:8622766 PMID:9811866 MGI:1313057 MGI:80519 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (MGI:74339|PMID:7600998) RGD PMID:7600998 MGI:74339 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO MGI:3698004 (MGI:3697552|PMID:17082251) RGD PMID:17082251 MGI:3697552 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Traf6 TNF receptor associated factor 6 ISO (MGI:2181331|PMID:11007897) RGD PMID:11007897 MGI:2181331 NCBI chr 3:91,252,829...91,271,607
Ensembl chr 3:91,252,829...91,271,607
JBrowse link
G Trim71 tripartite motif containing 71 ISO MGI:4123844 (MGI:4356244|PMID:19098426) RGD PMID:19098426 MGI:4356244 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Tsc1 TSC complex subunit 1 ISO MGI:2183146 (MGI:2137425|PMID:11438694) RGD PMID:11438694 MGI:2137425 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145
JBrowse link
G Tsc2 TSC complex subunit 2 ISO MGI:1926345 (MGI:1333508|PMID:10096549) RGD PMID:10096549 MGI:1333508 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:3664273 (MGI:3841513|PMID:19223390) RGD PMID:19223390 MGI:3841513 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO MGI:1857265 (MGI:72096|PMID:7729687) RGD PMID:7729687 MGI:72096 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:105056|MGI:107926|MGI:1100883|MGI:1349164|MGI:1857642|MGI:1918711|MGI:1923799|MGI:2139764|MGI:98958 (MGI:2153976|PMID:11709546), (MGI:2449213|PMID:12499390), (MGI:2676511|PMID:14512015), (MGI:3046397|PMID:15229603), (MGI:3703464|PMID:17229766), (MGI:3714704|PMID:17433286), (MGI:4438817|PMID:19966784), (MGI:4880797|PMID:21246654), (MGI:5498591|PMID:23760952) RGD PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 PMID:17433286 PMID:19966784 PMID:21246654 PMID:23760952 MGI:2153976 MGI:2449213 MGI:2676511 MGI:3046397 MGI:3703464 MGI:3714704 MGI:4438817 MGI:4880797 MGI:5498591 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Vasp vasodilator-stimulated phosphoprotein involved_in ISO
IBA
MGI:108360 (MGI:3054149|PMID:15371503)
PMID:21873635
RGD PMID:15371503, PMID:21873635, PMID:21873635 MGI:3054149, RGD:13792537, RGD:13792537 NCBI chr 1:80,170,608...80,185,882
Ensembl chr 1:80,170,619...80,185,882
JBrowse link
G Wnt5a Wnt family member 5A ISO MGI:1298218|MGI:2135272 (MGI:3714704|PMID:17433286), (MGI:4413372|PMID:19795512) RGD PMID:17433286 PMID:19795512 MGI:3714704 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO MGI:2387501 (MGI:3624924|PMID:16598713) RGD PMID:16598713 MGI:3624924 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
G Zic2 Zic family member 2 ISO MGI:1862004 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr15:108,908,366...108,913,812
Ensembl chr15:108,908,607...108,912,737
JBrowse link
G Zic5 Zic family member 5 ISO MGI:3052154 (MGI:3051968|PMID:15136147) RGD PMID:15136147 MGI:3051968 NCBI chr15:108,891,992...108,907,601
Ensembl chr15:108,891,992...108,898,703
JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brpf1 bromodomain and PHD finger containing, 1 ISO MGI:5705132 (MGI:5806011|PMID:27528195) RGD PMID:27528195 MGI:5806011 NCBI chr 4:145,264,445...145,280,943
Ensembl chr 4:145,264,462...145,280,857
JBrowse link
G Casp8 caspase 8 ISO MGI:3609638 (MGI:3609631|PMID:12404118) RGD PMID:12404118 MGI:3609631 NCBI chr 9:65,614,142...65,662,624
Ensembl chr 9:65,614,142...65,662,106
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2179740 (MGI:2179743|PMID:11694877) RGD PMID:11694877 MGI:2179743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Coq7 coenzyme Q7, hydroxylase ISO MGI:2158322 (MGI:2154585|PMID:11716496) RGD PMID:11716496 MGI:2154585 NCBI chr 1:188,176,060...188,190,874
Ensembl chr 1:188,174,874...188,190,860
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:2682066 (MGI:2679893|PMID:14603322) RGD PMID:14603322 MGI:2679893 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ipmk inositol polyphosphate multikinase ISO MGI:3583918 (MGI:3583505|PMID:15939867) RGD PMID:15939867 MGI:3583505 NCBI chr20:18,457,309...18,489,884
Ensembl chr20:18,457,310...18,489,833
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 ISO (MGI:3607973|PMID:16260493) RGD PMID:16260493 MGI:3607973 NCBI chr 5:47,183,142...47,244,424
Ensembl chr 5:47,186,558...47,244,416
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 ISO MGI:3603514 (MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:3603078 NCBI chr18:1,970,914...2,094,920
Ensembl chr18:1,970,914...2,094,920
JBrowse link
G Nup50 nucleoporin 50 involved_in IEA
ISO
GO_REF:0000107
MGI:103561|MGI:107532|MGI:2152414|MGI:2385621|MGI:2386173 (MGI:1860670|PMID:10891500)
Ensembl
RGD
PMID:10891500 GO_REF:0000107 MGI:1860670 NCBI chr 7:125,833,557...125,850,830
Ensembl chr 7:125,833,557...125,850,827
JBrowse link
G Ptch1 patched 1 ISO (MGI:3687672|PMID:10500113) RGD PMID:10500113 MGI:3687672 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:8124714 RGD:69996 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024 MGI:5285157 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:5285157|PMID:20596238) RGD PMID:20596238 MGI:5285157 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Stk3 serine/threonine kinase 3 involved_in IEA
ISO
GO_REF:0000107
MGI:1929004 (MGI:4412133|PMID:19786569)
Ensembl
RGD
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 7:73,617,926...73,883,896
Ensembl chr 7:73,618,644...73,883,812
JBrowse link
G Stk4 serine/threonine kinase 4 ISO MGI:1928487 (MGI:4412133|PMID:19786569) RGD PMID:19786569 MGI:4412133 NCBI chr 3:160,467,552...160,546,540
Ensembl chr 3:160,467,552...160,546,540
JBrowse link
G Tctn1 tectonic family member 1 ISO MGI:3716885 (MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:2136130|PMID:11406614) RGD PMID:11406614 MGI:2136130 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ADP-ribosylation factor like GTPase 13B ISO (MGI:5444047|PMID:23014696) RGD PMID:23014696 MGI:5444047 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1-like ISO MGI:2442827 (MGI:6149643|PMID:29487109) RGD PMID:29487109 MGI:6149643 NCBI chr 8:107,875,659...107,916,298
Ensembl chr 8:107,875,991...107,916,294
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:4458412 (MGI:5635784|PMID:24009529) RGD PMID:24009529 MGI:5635784 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379) RGD PMID:8681379 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Rpgrip1l Rpgrip1-like ISO MGI:3716208 (MGI:3715393|PMID:17553904) RGD PMID:17553904 MGI:3715393 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:1919757 (MGI:6149643|PMID:29487109) RGD PMID:29487109 MGI:6149643 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tmem107 transmembrane protein 107 ISO (MGI:5432629|PMID:22698544) RGD PMID:22698544 MGI:5432629 NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO MGI:4129326 (MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:5298450 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 ISO MGI:1918711|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO
IBA
MGI:106613 (MGI:3624185|PMID:16571627)
PMID:21873635
RGD PMID:16571627, PMID:21873635, PMID:21873635 MGI:3624185, RGD:13792537, RGD:13792537 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO
IBA
MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627)
PMID:21873635
RGD PMID:16571627, PMID:21873635, PMID:21873635 MGI:3624185, RGD:13792537, RGD:13792537 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO
IBA
MGI:2135272 (MGI:3821448|PMID:19008950)
PMID:21873635
RGD PMID:19008950, PMID:21873635 MGI:3821448, RGD:13792537 NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302
JBrowse link
G Fzd1 frizzled class receptor 1 involved_in IEA
ISO
GO_REF:0000107
MGI:1888513|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1196625|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:2135272 (MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:4819429 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO MGI:1100883|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:108078|MGI:1860298|MGI:2135272 (MGI:3793375|PMID:18257070)
Ensembl
RGD
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:1860298|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Sfrp5 secreted frizzled-related protein 5 ISO MGI:108078|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 1:261,442,108...261,446,570
Ensembl chr 1:261,442,108...261,446,570
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:106613|MGI:108078|MGI:108100|MGI:1100883|MGI:1196625|MGI:1857642|MGI:1860298|MGI:1888513|MGI:1918711|MGI:2655333|MGI:892014 (MGI:3624185|PMID:16571627), (MGI:3793375|PMID:18257070), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4830023|PMID:20704721), (MGI:4837757|PMID:20940229) RGD PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 PMID:20940229 MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
MGI:1857617 (MGI:4830282|PMID:19056682)
Ensembl
RGD
PMID:19056682 GO_REF:0000107 MGI:4830282 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gorab golgin, RAB6-interacting ISO (MGI:5766823|PMID:26967474) RGD PMID:26967474 MGI:5766823 NCBI chr13:81,682,207...81,698,827
Ensembl chr13:81,682,018...81,698,833
JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:4440619|MGI:4440621 (MGI:4438817|PMID:19966784) RGD PMID:19966784 MGI:4438817 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 ISO MGI:95728|MGI:95729 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:2145349 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:2145349 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4887578 (MGI:4868517|PMID:21045211)
Ensembl
RGD
PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 ISO MGI:2386906 (MGI:1353705|PMID:10693795) RGD PMID:10693795 MGI:1353705 NCBI chr 6:33,496,596...33,507,626
Ensembl chr 6:33,503,217...33,507,542
JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:11,137,889...11,164,854
Ensembl chr  X:11,136,939...11,164,915
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO MGI:1857632 (MGI:82985|PMID:8887324) RGD PMID:8887324 MGI:82985 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:2179440 (MGI:4421275|PMID:19913509) RGD PMID:19913509 MGI:4421275 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:2442827|MGI:95729 (MGI:3709667|PMID:17395647), (MGI:4439200|PMID:20159594) RGD PMID:17395647 PMID:20159594 MGI:3709667 MGI:4439200 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:2442827|MGI:95728 (MGI:3709667|PMID:17395647), (MGI:4439200|PMID:20159594) RGD PMID:17395647 PMID:20159594 MGI:3709667 MGI:4439200 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:2443231 (MGI:5428054|PMID:22689656) RGD PMID:22689656 MGI:5428054 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ptch1 patched 1 ISO MGI:1857447 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:95728|MGI:95729 (MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:3664273 (MGI:3841513|PMID:19223390) RGD PMID:19223390 MGI:3841513 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:1932386|MGI:5315748 (MGI:5428054|PMID:22689656) RGD PMID:22689656 MGI:5428054 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:25281935 RGD:12832757 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure development 6308
        tube development 1221
          neural tube development 199
            floor plate development + 10
            neural tube formation + 136
            neural tube patterning + 50
Path 2
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure development 6308
        multicellular organism development 5783
          embryo development 1312
            embryo development ending in birth or egg hatching 863
              chordate embryonic development 847
                neural tube development 199
                  floor plate development + 10
                  neural tube formation + 136
                  neural tube patterning + 50
paths to the root