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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide metabolic process
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Accession:GO:0009219 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine deoxynucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide metabolism

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dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr20:85,541,796...85,584,167
Ensembl chr20:85,541,205...85,584,068 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:35,376,738...36,215,388
Ensembl chr20:35,377,266...36,215,679 		JBrowse link
G DPYS dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chr 8:99,216,623...99,303,969
Ensembl chr 8:99,216,354...99,303,282 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,605,999...7,639,339
Ensembl chr19:7,605,537...7,639,017 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:10,686,600...10,707,181
Ensembl chr21:10,686,093...10,706,347 		JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:43,510,752...43,545,133 JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:27,096,489...27,102,778
Ensembl chr 5:27,096,212...27,102,835 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:192455 GO_REF:0000118 RGD:5133256 NCBI chr14:100,804,295...100,820,565
Ensembl chr14:100,804,400...100,819,027 		JBrowse link
G DTYMK deoxythymidylate kinase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:8845311) RGD
TreeGrafter
MGI
InterPro		 PMID:220041 PMID:8845311 GO_REF:0000002 GO_REF:0000118 RGD:5133687 NCBI chr10:127,722,091...127,733,662
Ensembl chr10:127,721,784...127,733,476 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) MGI PMID:10952785 PMID:15322254 NCBI chr26:34,941,775...34,954,184
Ensembl chr26:34,940,702...34,953,166 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr16:17,371,704...17,408,499 JBrowse link
G TYMS thymidylate synthetase involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl
InterPro		 PMID:9894005 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1545055 NCBI chr18:60,030,640...60,043,297
Ensembl chr18:60,030,658...60,041,856 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G TYMP thymidine phosphorylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:32,997,337...33,001,558
Ensembl chr19:32,997,304...33,001,215 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in
NOT|involved_in		 IEA
ISO		 (MGI:3584214|PMID:15772079) Ensembl
UniProt		 PMID:15772079 GO_REF:0000107 MGI:3584214 NCBI chr21:10,686,600...10,707,181
Ensembl chr21:10,686,093...10,706,347 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:100,804,295...100,820,565
Ensembl chr14:100,804,400...100,819,027 		JBrowse link
G DTYMK deoxythymidylate kinase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:220041 GO_REF:0000118 RGD:5133687 NCBI chr10:127,722,091...127,733,662
Ensembl chr10:127,721,784...127,733,476 		JBrowse link
G TBPL1 TATA-box binding protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11861477) Ensembl
MGI		 PMID:11861477 GO_REF:0000107 NCBI chr13:39,487,007...39,523,752
Ensembl chr13:39,483,880...39,522,115 		JBrowse link
G TYMS thymidylate synthetase involved_in IEA UniProt GO_REF:0000041 NCBI chr18:60,030,640...60,043,297
Ensembl chr18:60,030,658...60,041,856 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chr 5:27,096,489...27,102,778
Ensembl chr 5:27,096,212...27,102,835 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr20:85,541,796...85,584,167
Ensembl chr20:85,541,205...85,584,068 		JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:192455 GO_REF:0000118 RGD:5133256 NCBI chr14:100,804,295...100,820,565
Ensembl chr14:100,804,400...100,819,027 		JBrowse link
G DTYMK deoxythymidylate kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:127,722,091...127,733,662
Ensembl chr10:127,721,784...127,733,476 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IEA		 RGD
TreeGrafter
UniProt
InterPro		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chr26:34,941,775...34,954,184
Ensembl chr26:34,940,702...34,953,166 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:35,376,738...36,215,388
Ensembl chr20:35,377,266...36,215,679 		JBrowse link
G DPYS dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chr 8:99,216,623...99,303,969
Ensembl chr 8:99,216,354...99,303,282 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12234672) Ensembl
MGI		 PMID:12234672 GO_REF:0000107 NCBI chr16:16,348,151...16,385,203
Ensembl chr16:16,348,346...16,384,490 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,605,999...7,639,339
Ensembl chr19:7,605,537...7,639,017 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:10,686,600...10,707,181
Ensembl chr21:10,686,093...10,706,347 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IEA		 RGD
UniProt
InterPro
TreeGrafter		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chr26:34,941,775...34,954,184
Ensembl chr26:34,940,702...34,953,166 		JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:16,348,151...16,385,203
Ensembl chr16:16,348,346...16,384,490 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17080
    metabolic process 11165
      pyrimidine-containing compound metabolic process 63
        pyrimidine nucleotide metabolic process 42
          pyrimidine deoxyribonucleotide metabolic process 16
            dCDP metabolic process + 1
            dCMP metabolic process + 6
            dCTP metabolic process + 1
            dTDP metabolic process + 2
            dTMP metabolic process + 6
            dTTP metabolic process + 5
            dUDP metabolic process + 3
            dUMP metabolic process + 7
            dUTP metabolic process + 1
            pyrimidine deoxyribonucleotide biosynthetic process + 7
            pyrimidine deoxyribonucleotide catabolic process + 10
            pyrimidine deoxyribonucleotide interconversion 0
Path 2
Term Annotations click to browse term
  biological_process 17080
    cellular process 15997
      cellular metabolic process 9346
        phosphorus metabolic process 2593
          phosphate-containing compound metabolic process 2566
            nucleoside phosphate metabolic process 562
              nucleotide metabolic process 554
                deoxyribonucleotide metabolic process 45
                  2'-deoxyribonucleotide metabolic process 43
                    pyrimidine deoxyribonucleotide metabolic process 16
                      dCDP metabolic process + 1
                      dCMP metabolic process + 6
                      dCTP metabolic process + 1
                      dTDP metabolic process + 2
                      dTMP metabolic process + 6
                      dTTP metabolic process + 5
                      dUDP metabolic process + 3
                      dUMP metabolic process + 7
                      dUTP metabolic process + 1
                      pyrimidine deoxyribonucleotide biosynthetic process + 7
                      pyrimidine deoxyribonucleotide catabolic process + 10
                      pyrimidine deoxyribonucleotide interconversion 0
paths to the root