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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine deoxyribonucleotide biosynthetic process
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Accession:GO:0009221 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide anabolism;   pyrimidine deoxyribonucleotide biosynthesis;   pyrimidine deoxyribonucleotide formation;   pyrimidine deoxyribonucleotide synthesis
 xref: MetaCyc:PWY0-166



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dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:192455 PMID:21873635 RGD:5133256, RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within
IDA
IBA
ISO
PMID:21873635
(PMID:12614151)
(MGI:77260|PMID:8845311)
RGD PMID:8845311 PMID:12614151 PMID:220041 PMID:21873635 MGI:77260, RGD:5133687, RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) RGD PMID:10952785 PMID:15322254 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:45,468,698...45,497,820
Ensembl chr10:45,468,700...45,497,820
JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(MGI:5300404|PMID:22057276)
(PMID:11278511), (PMID:15093541), (PMID:8845352)
InterPro
RGD
PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 More... GO_REF:0000002 MGI:5300404, RGD:1545055, RGD:13792537 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
JBrowse link
G Dtymk deoxythymidylate kinase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:220041 PMID:21873635 RGD:5133687, RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (MGI:2159505|PMID:11861477) RGD PMID:11861477 MGI:2159505 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122
JBrowse link
G Tyms thymidylate synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:3010881 RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:192455 PMID:21873635 RGD:5133256, RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt
RGD
PMID:3032103 PMID:21873635 PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
G ENSRNOG00000069939 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr13:67,763,505...67,765,634 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20091
    metabolic process 12359
      nitrogen compound metabolic process 10565
        cellular nitrogen compound metabolic process 6822
          pyrimidine-containing compound metabolic process 72
            pyrimidine nucleotide metabolic process 48
              pyrimidine nucleotide biosynthetic process 35
                pyrimidine deoxyribonucleotide biosynthetic process 10
                  dCDP biosynthetic process + 1
                  dCMP biosynthetic process + 0
                  dCTP biosynthetic process 0
                  dTDP biosynthetic process 2
                  dTMP biosynthetic process + 4
                  dTTP biosynthetic process 4
                  dUDP biosynthetic process 3
                  dUMP biosynthetic process 4
                  dUTP biosynthetic process 0
                  pyrimidine deoxyribonucleotide salvage + 0
Path 2
Term Annotations click to browse term
  biological_process 20091
    metabolic process 12359
      cellular metabolic process 10396
        cellular aromatic compound metabolic process 6013
          nucleobase-containing compound metabolic process 5780
            nucleobase-containing small molecule metabolic process 695
              nucleoside phosphate metabolic process 621
                nucleotide metabolic process 611
                  deoxyribonucleotide metabolic process 45
                    2'-deoxyribonucleotide metabolic process 43
                      pyrimidine deoxyribonucleotide metabolic process 19
                        pyrimidine deoxyribonucleotide biosynthetic process 10
                          dCDP biosynthetic process + 1
                          dCMP biosynthetic process + 0
                          dCTP biosynthetic process 0
                          dTDP biosynthetic process 2
                          dTMP biosynthetic process + 4
                          dTTP biosynthetic process 4
                          dUDP biosynthetic process 3
                          dUMP biosynthetic process 4
                          dUTP biosynthetic process 0
                          pyrimidine deoxyribonucleotide salvage + 0
paths to the root