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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation



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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO
IBA
(PMID:10681516)
GO_REF:0000033
RGD
GO_Central
PMID:10681516 GO_REF:0000033 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150
JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO
GO_REF:0000107
(PMID:5472365)
Ensembl
RGD
PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO
GO_REF:0000107
(PMID:5472365)
Ensembl
RGD
PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:7744869) RGD PMID:7744869 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) RGD PMID:12849978 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO
IBA
ISS
(PMID:24467396)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:24467396 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Tymp thymidine phosphorylase involved_in ISO MGI:2183547 (PMID:12077348) RGD PMID:12077348 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in
ISO MGI:3699164 (PMID:12077348)
MGI:3699164 (PMID:15772079)
RGD PMID:12077348 PMID:15772079 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) RGD PMID:24467396 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO
GO_REF:0000107
(PMID:5472365)
Ensembl
RGD
PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO
GO_REF:0000107
(PMID:5472365)
Ensembl
RGD
PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) RGD PMID:10681516 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (PMID:12234672) RGD PMID:12234672 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150
JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14154460) RGD PMID:14154460 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:3032103 PMID:1315924 GO_REF:0000033, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
G ENSRNOG00000069939 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr13:67,763,505...67,765,634 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20052
    cellular process 19130
      metabolic process 11925
        catabolic process 2865
          carbohydrate derivative catabolic process 309
            deoxyribose phosphate catabolic process 26
              pyrimidine deoxyribonucleotide catabolic process 12
                dCDP catabolic process 0
                dCMP catabolic process 6
                dCTP catabolic process 1
                dTDP catabolic process 0
                dTMP catabolic process 3
                dTTP catabolic process 1
                dUDP catabolic process 0
                dUMP catabolic process 6
                dUTP catabolic process 3
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 20052
    cellular process 19130
      metabolic process 11925
        primary metabolic process 10561
          nucleobase-containing compound metabolic process 5791
            nucleobase-containing small molecule metabolic process 721
              nucleoside phosphate metabolic process 685
                nucleotide metabolic process 532
                  deoxyribonucleotide metabolic process 43
                    2'-deoxyribonucleotide metabolic process 41
                      pyrimidine deoxyribonucleotide metabolic process 18
                        pyrimidine deoxyribonucleotide catabolic process 12
                          dCDP catabolic process 0
                          dCMP catabolic process 6
                          dCTP catabolic process 1
                          dTDP catabolic process 0
                          dTMP catabolic process 3
                          dTTP catabolic process 1
                          dUDP catabolic process 0
                          dUMP catabolic process 6
                          dUTP catabolic process 3
                          depyrimidination 0
paths to the root