ONTOLOGY REPORT - ANNOTATIONS
Term: pyrimidine nucleotide metabolic process
Accession: GO:0006220
browse the term
Definition: The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms: exact_synonym: pyrimidine nucleotide metabolism
broad_synonym: pyrimidine metabolic process; pyrimidine metabolism
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Dck
deoxycytidine kinase
involved_in
ISO
(PMID:12808445)
UniProt
PMID:12808445
NCBI chrNW_004955447:2,031,851...2,067,005
Ensembl chrNW_004955447:2,031,258...2,067,210
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Enpp3
ectonucleotide pyrophosphatase/phosphodiesterase 3
involved_in
ISO
(PMID:11342463)
UniProt
PMID:11342463
NCBI chrNW_004955436:12,310,773...12,384,815
Ensembl chrNW_004955436:12,310,765...12,385,197
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Upp1
uridine phosphorylase 1
acts_upstream_of_or_within
ISO
(PMID:15772079)
MGI
PMID:15772079
NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
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Cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
involved_in
ISO
(PMID:25678555) (PMID:33771897)
MGI
PMID:25678555 PMID:33771897
NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865
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Dhodh
dihydroorotate dehydrogenase (quinone)
involved_in
ISO
(PMID:30449682), (PMID:6249586)
MGI
PMID:6249586 PMID:30449682
NCBI chrNW_004955484:4,699,743...4,713,466
Ensembl chrNW_004955484:4,699,722...4,713,466
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Umps
uridine monophosphate synthetase
involved_in
ISO
(PMID:6154574) (PMID:2419341)
MGI
PMID:2419341 PMID:6154574
NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
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Cmpk1
cytidine/uridine monophosphate kinase 1
ISO
RGD
PMID:3010881
RGD:5133253
NCBI chrNW_004955464:11,179,432...11,213,147
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
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Dpys
dihydropyrimidinase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
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Nt5c3a
5'-nucleotidase, cytosolic IIIA
involved_in
ISO
(PMID:22925580)
MGI
PMID:22925580
NCBI chrNW_004955617:240,132...293,278
Ensembl chrNW_004955617:239,631...293,178
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Upb1
beta-ureidopropionase 1
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946
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Upp1
uridine phosphorylase 1
involved_in
ISO
(PMID:14715930)
MGI
PMID:14715930
NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
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Upp2
uridine phosphorylase 2
involved_in
ISO
(PMID:14715930)
MGI
PMID:14715930
NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235
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Ctps1
CTP synthase 1
involved_in
ISO
(PMID:24870241) (PMID:16179339)
UniProt
PMID:16179339 PMID:24870241
NCBI chrNW_004955537:773,664...811,084
Ensembl chrNW_004955537:774,002...813,254
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Entpd7
ectonucleoside triphosphate diphosphohydrolase 7
involved_in
ISO
(PMID:11278936)
UniProt
PMID:11278936
NCBI chrNW_004955507:5,552,788...5,594,911
Ensembl chrNW_004955507:5,552,764...5,594,911
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Entpd4
ectonucleoside triphosphate diphosphohydrolase 4
involved_in
ISO
(PMID:10858452)
UniProt
PMID:10858452
NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643
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Uck1
uridine-cytidine kinase 1
involved_in
ISO
(PMID:11306702)
UniProt
PMID:11306702
NCBI chrNW_004955513:1,203,934...1,208,720
Ensembl chrNW_004955513:1,203,934...1,208,724
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Uck2
uridine-cytidine kinase 2
involved_in
ISO
(PMID:11306702)
UniProt
PMID:11306702
NCBI chrNW_004955462:10,815,496...10,925,364
Ensembl chrNW_004955462:10,815,389...10,886,227
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Cmpk1
cytidine/uridine monophosphate kinase 1
ISO
RGD
PMID:192455
RGD:5133256
NCBI chrNW_004955464:11,179,432...11,213,147
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
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Dpys
dihydropyrimidinase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
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Nt5c
5', 3'-nucleotidase, cytosolic
involved_in
ISO
(PMID:6301357)
MGI
PMID:6301357
NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
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Upb1
beta-ureidopropionase 1
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946
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Upp1
uridine phosphorylase 1
involved_in
ISO
(PMID:7744869)
MGI
PMID:7744869
NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
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Upp2
uridine phosphorylase 2
involved_in
ISO
(PMID:12849978)
MGI
PMID:12849978
NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235
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Dctpp1
dCTP pyrophosphatase 1
involved_in
ISO
(PMID:24467396)
UniProt
PMID:24467396
NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
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Cmpk2
cytidine/uridine monophosphate kinase 2
ISO
RGD
PMID:192455
RGD:5133256
NCBI chrNW_004955487:2,010,126...2,024,804
Ensembl chrNW_004955487:2,010,228...2,029,175
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Dtymk
deoxythymidylate kinase
acts_upstream_of_or_within involved_in
ISO
(PMID:8845311) (PMID:12614151)
RGD MGI UniProt
PMID:220041 PMID:8845311 PMID:12614151
RGD:5133687
NCBI chrNW_004955542:155,741...163,759
Ensembl chrNW_004955542:155,742...163,759
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Dut
deoxyuridine triphosphatase
involved_in
ISO
(PMID:10952785), (PMID:15322254)
MGI
PMID:10952785 PMID:15322254
NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
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Shmt1
serine hydroxymethyltransferase 1
involved_in
ISO
(MGI:3849912|PMID:19513116)
BHF-UCL
PMID:19513116
MGI:3849912
NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202
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Tyms
thymidylate synthetase
involved_in
ISO
(PMID:22057276) (PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD MGI CAFA
PMID:8845352 PMID:9894005 PMID:11278511 PMID:15093541 PMID:22057276
RGD:1545055
NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
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Nt5c
5', 3'-nucleotidase, cytosolic
involved_in
ISO
(PMID:6301357)
MGI
PMID:6301357
NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
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Tymp
thymidine phosphorylase
involved_in
ISO
(PMID:12077348)
MGI
PMID:12077348
NCBI chrNW_004955413:33,505,424...33,509,095
Ensembl chrNW_004955413:33,505,446...33,508,748
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Upp1
uridine phosphorylase 1
NOT|involved_in
ISO
(MGI:3584214|PMID:15772079) (PMID:12077348)
UniProt MGI
PMID:12077348 PMID:15772079
MGI:3584214
NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
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Dtymk
deoxythymidylate kinase
ISO
RGD
PMID:220041
RGD:5133687
NCBI chrNW_004955542:155,741...163,759
Ensembl chrNW_004955542:155,742...163,759
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Tbpl1
TATA-box binding protein like 1
acts_upstream_of_or_within
ISO
(PMID:11861477)
MGI
PMID:11861477
NCBI chrNW_004955439:2,539,465...2,548,351
Ensembl chrNW_004955439:2,539,486...2,563,720
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Dctpp1
dCTP pyrophosphatase 1
NOT|involved_in
ISO
(PMID:24467396)
UniProt
PMID:24467396
NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
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Cmpk1
cytidine/uridine monophosphate kinase 1
ISO
RGD
PMID:3010881
RGD:5133253
NCBI chrNW_004955464:11,179,432...11,213,147
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Cmpk2
cytidine/uridine monophosphate kinase 2
ISO
RGD
PMID:192455
RGD:5133256
NCBI chrNW_004955487:2,010,126...2,024,804
Ensembl chrNW_004955487:2,010,228...2,029,175
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Dut
deoxyuridine triphosphatase
ISO
RGD
PMID:1315924 PMID:3032103
RGD:2300191 RGD:2301218
NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
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Dpys
dihydropyrimidinase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
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Nt5c
5', 3'-nucleotidase, cytosolic
involved_in
ISO
(PMID:10681516)
MGI
PMID:10681516
NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
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Nt5m
5',3'-nucleotidase, mitochondrial
acts_upstream_of_or_within
ISO
(PMID:12234672)
MGI
PMID:12234672
NCBI chrNW_004955577:582,206...608,614
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Upb1
beta-ureidopropionase 1
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946
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Upp1
uridine phosphorylase 1
involved_in
ISO
(PMID:14154460)
MGI
PMID:14154460
NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
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Dut
deoxyuridine triphosphatase
ISO
RGD
PMID:1315924 PMID:3032103
RGD:2300191 RGD:2301218
NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
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Nt5c
5', 3'-nucleotidase, cytosolic
involved_in
ISO
(PMID:10681516)
UniProt
PMID:10681516
NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
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Slc4a7
solute carrier family 4 member 7
involved_in
ISO
(PMID:35772404)
UniProt
PMID:35772404
NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754
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Cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
involved_in
ISO
(PMID:25678555)
MGI
PMID:25678555
NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865
G
Cmpk1
cytidine/uridine monophosphate kinase 1
involved_in
ISO
(PMID:11912132)
RGD MGI
PMID:3010881 PMID:11912132
RGD:5133253
NCBI chrNW_004955464:11,179,432...11,213,147
G
Dhodh
dihydroorotate dehydrogenase (quinone)
involved_in
ISO
(PMID:30449682), (PMID:6249586)
MGI
PMID:6249586 PMID:30449682
NCBI chrNW_004955484:4,699,743...4,713,466
Ensembl chrNW_004955484:4,699,722...4,713,466
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Umps
uridine monophosphate synthetase
involved_in
ISO
(PMID:6154574) (PMID:2419341)
MGI
PMID:2419341 PMID:6154574
NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
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Entpd4
ectonucleoside triphosphate diphosphohydrolase 4
involved_in
ISO
(PMID:10858452), (PMID:9556635)
UniProt
PMID:9556635 PMID:10858452
NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643
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Entpd5
ectonucleoside triphosphate diphosphohydrolase 5 (inactive)
involved_in
ISO
(MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248)
UniProt
PMID:10369669 PMID:21074248
MGI:1927266 MGI:4881347
NCBI chrNW_004955523:1,407,812...1,441,829
Ensembl chrNW_004955523:1,421,749...1,441,829
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Uck1
uridine-cytidine kinase 1
acts_upstream_of_or_within
ISO
(MGI:84399|PMID:8951040)
GOC
PMID:8951040
MGI:84399
NCBI chrNW_004955513:1,203,934...1,208,720
Ensembl chrNW_004955513:1,203,934...1,208,724
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Umps
uridine monophosphate synthetase
involved_in
ISO
(PMID:11730338), (PMID:18184586), (PMID:6893554), (PMID:9042911)
RGD UniProt
PMID:6134725 PMID:6893554 PMID:9042911 PMID:11730338 PMID:18184586
RGD:5132277
NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
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Uprt
uracil phosphoribosyltransferase homolog
ISO
RGD
PMID:1476792
RGD:5132591
NCBI chrNW_004955562:1,385,617...1,415,277
Ensembl chrNW_004955562:1,385,611...1,415,336
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
G
Dpys
dihydropyrimidinase
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
G
Nt5c
5', 3'-nucleotidase, cytosolic
involved_in
ISO
(PMID:10681516)
MGI
PMID:10681516
NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
G
Upb1
beta-ureidopropionase 1
involved_in
ISO
(PMID:5472365)
MGI
PMID:5472365
NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946
G
Upp1
uridine phosphorylase 1
involved_in
ISO
(PMID:14715930), (PMID:7744869)
MGI
PMID:7744869 PMID:14715930
NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
G
Upp2
uridine phosphorylase 2
involved_in
ISO
(PMID:14715930)
MGI
PMID:14715930
NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235
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Cda
cytidine deaminase
involved_in
ISO
(PMID:6498945)
MGI
PMID:6498945
NCBI chrNW_004955452:1,131,968...1,156,777
Ensembl chrNW_004955452:1,132,049...1,156,565
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Uck1
uridine-cytidine kinase 1
involved_in
ISO
(PMID:11306702) (PMID:8951040)
UniProt MGI
PMID:8951040 PMID:11306702
NCBI chrNW_004955513:1,203,934...1,208,720
Ensembl chrNW_004955513:1,203,934...1,208,724
G
Uck2
uridine-cytidine kinase 2
involved_in
ISO
(PMID:11306702), (PMID:27239701)
MGI
PMID:11306702 PMID:27239701
NCBI chrNW_004955462:10,815,496...10,925,364
Ensembl chrNW_004955462:10,815,389...10,886,227
G
Upp1
uridine phosphorylase 1
involved_in
ISO
(PMID:11956089)
MGI
PMID:11956089
NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
G
Cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
ISO
RGD
PMID:10659854
RGD:2303528
NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865
G
Entpd7
ectonucleoside triphosphate diphosphohydrolase 7
involved_in
ISO
(PMID:11278936)
UniProt
PMID:11278936
NCBI chrNW_004955507:5,552,788...5,594,911
Ensembl chrNW_004955507:5,552,764...5,594,911
G
Ak3
adenylate kinase 3
involved_in
ISO
(PMID:11485571)
BHF-UCL
PMID:11485571
NCBI chrNW_004955434:8,998,357...9,010,468
Ensembl chrNW_004955434:9,000,158...9,011,250
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all