Upp2 (uridine phosphorylase 2) - Rat Genome Database

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Gene: Upp2 (uridine phosphorylase 2) Chinchilla lanigera
Analyze
Symbol: Upp2
Name: uridine phosphorylase 2
RGD ID: 8986128
Description: ENCODES a protein that exhibits deoxyuridine phosphorylase activity (ortholog); identical protein binding (ortholog); uridine phosphorylase activity (ortholog); INVOLVED IN CMP catabolic process (ortholog); dCMP catabolic process (ortholog); UMP catabolic process (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cytosol (ortholog); type III intermediate filament (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544915,365,106 - 15,405,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544915,355,592 - 15,405,997 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Upp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544915,365,106 - 15,405,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544915,355,592 - 15,405,997 (-)NCBIChiLan1.0ChiLan1.0
UPP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2157,876,702 - 158,136,154 (+)EnsemblGRCh38hg38GRCh38
GRCh382157,995,179 - 158,136,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372158,851,691 - 158,992,666 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362158,559,937 - 158,700,724 (+)NCBINCBI36hg18NCBI36
Build 342158,677,198 - 158,817,985NCBI
Celera2152,468,457 - 152,609,424 (+)NCBI
Cytogenetic Map2q24.1NCBI
HuRef2150,739,887 - 150,880,962 (+)NCBIHuRef
CHM1_12158,857,583 - 158,998,565 (+)NCBICHM1_1
Upp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39258,456,329 - 58,685,858 (+)NCBIGRCm39mm39
GRCm39 Ensembl258,457,310 - 58,682,983 (+)Ensembl
GRCm38258,566,317 - 58,795,846 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl258,567,298 - 58,792,971 (+)EnsemblGRCm38mm10GRCm38
MGSCv37258,607,596 - 58,643,079 (+)NCBIGRCm37mm9NCBIm37
MGSCv36258,570,571 - 58,606,054 (+)NCBImm8
Celera260,510,835 - 60,545,982 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
Upp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2343,273,048 - 43,317,417 (+)NCBI
Rnor_6.0 Ensembl344,806,106 - 44,846,464 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0344,806,106 - 44,846,464 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0349,922,719 - 49,961,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4340,492,002 - 40,536,956 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1340,380,721 - 40,432,184 (+)NCBI
Celera341,338,432 - 41,381,638 (+)NCBICelera
Cytogenetic Map3q21NCBI
UPP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B162,603,164 - 162,636,231 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B162,496,507 - 162,636,231 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B45,363,103 - 45,400,281 (+)NCBIMhudiblu_PPA_v0panPan3
Upp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303121,104,636 - 121,152,019 (+)NCBI
SpeTri2.0NW_00493646920,465,767 - 20,513,084 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UPP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1565,088,284 - 65,131,789 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11565,088,652 - 65,131,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21572,235,731 - 72,280,652 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UPP2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11043,510,752 - 43,545,133 (+)NCBI
Upp2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247327,574,609 - 7,641,345 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005628   ⟹   ENSCLAP00000005527
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544915,365,106 - 15,405,235 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005629   ⟹   ENSCLAP00000005528
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544915,366,930 - 15,405,232 (-)Ensembl
RefSeq Acc Id: XM_013518720   ⟹   XP_013374174
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,405,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518721   ⟹   XP_013374175
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,405,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518722   ⟹   XP_013374176
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,405,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518723   ⟹   XP_013374177
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,405,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518724   ⟹   XP_013374178
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,405,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518725   ⟹   XP_013374179
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,405,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518726   ⟹   XP_013374180
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,405,540 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518727   ⟹   XP_013374181
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,355,592 - 15,384,503 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_013374179   ⟸   XM_013518725
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374175   ⟸   XM_013518721
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374178   ⟸   XM_013518724
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374177   ⟸   XM_013518723
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374176   ⟸   XM_013518722
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374174   ⟸   XM_013518720
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374180   ⟸   XM_013518726
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013374181   ⟸   XM_013518727
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000005528   ⟸   ENSCLAT00000005629
RefSeq Acc Id: ENSCLAP00000005527   ⟸   ENSCLAT00000005628


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003919 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005528 ENTREZGENE
Ensembl Transcript ENSCLAT00000005629 ENTREZGENE
NCBI Gene Upp2 ENTREZGENE