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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation

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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) UniProt PMID:10681516 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:7744869) MGI PMID:7744869 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) MGI PMID:12849978 NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443 		JBrowse link
G Tymp thymidine phosphorylase involved_in ISO (PMID:12077348) MGI PMID:12077348 NCBI chrNW_004955413:33,505,424...33,509,095
Ensembl chrNW_004955413:33,505,446...33,508,748 		JBrowse link
G Upp1 uridine phosphorylase 1 NOT|involved_in ISO (MGI:3584214|PMID:15772079)
(PMID:12077348)		 UniProt
MGI		 PMID:12077348 PMID:15772079 MGI:3584214 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (PMID:12234672) MGI PMID:12234672 NCBI chrNW_004955577:582,206...608,614 JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14154460) MGI PMID:14154460 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924 PMID:3032103 RGD:2300191 RGD:2301218 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12321
    metabolic process 7441
      catabolic process 1882
        organic substance catabolic process 1553
          carbohydrate derivative catabolic process 200
            deoxyribose phosphate catabolic process 20
              pyrimidine deoxyribonucleotide catabolic process 10
                dCDP catabolic process 0
                dCMP catabolic process 6
                dCTP catabolic process 1
                dTDP catabolic process 0
                dTMP catabolic process 3
                dTTP catabolic process 1
                dUDP catabolic process 0
                dUMP catabolic process 6
                dUTP catabolic process 1
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 12321
    metabolic process 7441
      cellular metabolic process 6650
        cellular aromatic compound metabolic process 3915
          nucleobase-containing compound metabolic process 3724
            nucleobase-containing small molecule metabolic process 457
              nucleoside phosphate metabolic process 414
                nucleotide metabolic process 409
                  deoxyribonucleotide metabolic process 37
                    2'-deoxyribonucleotide metabolic process 36
                      pyrimidine deoxyribonucleotide metabolic process 16
                        pyrimidine deoxyribonucleotide catabolic process 10
                          dCDP catabolic process 0
                          dCMP catabolic process 6
                          dCTP catabolic process 1
                          dTDP catabolic process 0
                          dTMP catabolic process 3
                          dTTP catabolic process 1
                          dUDP catabolic process 0
                          dUMP catabolic process 6
                          dUTP catabolic process 1
                          depyrimidination 0
paths to the root