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HOMOCYSTEINE METABOLIC PATHWAY (PW:0000398)

View Ontology Report

Description

Homocysteine (Hcy) metabolism is at the cross-roads of several pathways; Hcy itself is a byproduct in the de novo pathway of methionine metabolic cycle. The first reaction of the methionine cycle produces S-adenosylmethionine, also known as AdoMet or SAM, which is the major methyl donor for nucleic acids, proteins, lipids and small molecules. The methyltransfer reaction, carried by a large number of methyltransferases (MTs) generates S-adenosylhomocysteine (SAH), the precursor of Hcy and also a

Pathway Diagram:

Elsevier Inc. S-adenosylhomocysteine <--> homocysteine 5-methyl-THF ---> THF Cbl Mtr remethylation pathway of homocysteine metabolism - cobalamin dependent 5-methyl-THF homocysteine adenosine S-adenosylmethionine Bhmt Mtrr Mthfr Ahcy transsulfuration pathway of homocysteine metabolism methionine dimethylglycine THF dimethylglycine ---| Bhmt S-adenosylmethionine ---| remethylation pathway of homocysteine metabolism - cobalamin dependent S-adenosylmethionine --+> transsulfuration pathway of homocysteine metabolism betaine S-adenosylhomocysteine homocysteine ---> cysteine, donwstream metabolites S-adenosylhomocysteine ---> adenosine betaine ---> dimethylglycine Mtrr ---> Mtr cysteine, donwstream metabolites folate cycle metabolic pathway folate mediated one-carbon metabolic pathway methionine cycle/metabolic pathway remethylation pathway of homocysteine metabolism - cobalamin independent, betaine dependent S-adenosylmethionine ---> S-adenosylhomocysteine homocysteine ---> methionine
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Genes in Pathway:


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homocysteine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase TAS
ISO
RGD PMID:11741948 PMID:20814827 RGD:730275, RGD:7242426 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
G As3mt arsenite methyltransferase TAS RGD PMID:11790780 RGD:625365 NCBI chr 1:245,595,939...245,628,921
Ensembl chr 1:245,596,108...245,627,872
JBrowse link
G Asmt acetylserotonin O-methyltransferase NAS RGD PMID:12198599 RGD:1359073 NCBI chr12:16,304,719...16,309,568
Ensembl chr12:16,304,719...16,309,568
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
JBrowse link
G Comt catechol-O-methyltransferase TAS RGD PMID:12584150 RGD:1359089 NCBI chr11:82,568,052...82,587,642
Ensembl chr11:82,568,025...82,587,642
JBrowse link
G Dnmt1 DNA methyltransferase 1 TAS RGD PMID:12473678 RGD:1359078 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO RGD PMID:12628190 RGD:1359080 NCBI chr 7:8,918,764...8,959,474
Ensembl chr 7:8,917,786...8,956,475
JBrowse link
G Gamt guanidinoacetate N-methyltransferase IDA RGD PMID:15533043 RGD:1359081 NCBI chr 7:9,448,590...9,451,413
Ensembl chr 7:9,448,628...9,451,778
JBrowse link
G Gnmt glycine N-methyltransferase IDA RGD PMID:15347642 RGD:1359070 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434
JBrowse link
G Hnmt histamine N-methyltransferase ISS RGD PMID:11566133 RGD:1359041 NCBI chr 3:6,591,804...6,623,821
Ensembl chr 3:6,591,463...6,624,012
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase ISS RGD PMID:15625008 RGD:1359083 NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128
JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 ISO RGD PMID:11827451 RGD:1359074 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118
JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
JBrowse link
G Nnmt nicotinamide N-methyltransferase ISO RGD PMID:15922112 RGD:1359084 NCBI chr 8:48,928,663...48,947,734
Ensembl chr 8:48,933,598...48,946,655
JBrowse link
G Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 IDA RGD PMID:8263531 RGD:729481 NCBI chr 1:2,111,756...2,160,354
Ensembl chr 1:2,111,763...2,159,201
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase IDA RGD PMID:8344945 RGD:729486 NCBI chr10:44,775,910...44,849,990
Ensembl chr10:44,775,911...44,850,013
JBrowse link
G Pnmt phenylethanolamine-N-methyltransferase TAS RGD PMID:12438084 RGD:1359087 NCBI chr10:83,383,019...83,386,557
Ensembl chr10:83,384,923...83,386,556
JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISS RGD PMID:15866169 RGD:1359044 NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345
JBrowse link
G Prmt3 protein arginine methyltransferase 3 ISS RGD PMID:15866169 RGD:1359044 NCBI chr 1:99,492,712...99,581,774
Ensembl chr 1:99,492,724...99,579,435
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:15866169 RGD:1359044 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 2:197,927,750...197,932,760
Ensembl chr 2:197,927,220...197,933,648
JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase ISO RGD PMID:11472630 RGD:1359071 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:11959841 RGD:1359072 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:11094092 RGD:1359810 NCBI chr17:74,756,290...74,775,332
Ensembl chr17:74,756,306...74,775,332
JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 ISO RGD PMID:12794065 RGD:1359088 NCBI chr17:76,601,966...76,646,104
Ensembl chr17:76,610,543...76,645,439
JBrowse link
remethylation pathway of homocysteine metabolism - cobalamin dependent term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IDA
ISO
RGD PMID:15845641 PMID:20814827 RGD:1359026, RGD:7242426 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 PMID:20814827 RGD:1359037, RGD:7242426 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
JBrowse link
remethylation pathway of homocysteine metabolism - cobalamin independent, betaine dependent term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase ISO SMPDB SMP:00123 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393
JBrowse link
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 ISO SMPDB SMP:00123 NCBI chr18:50,003,242...50,042,193
Ensembl chr18:50,009,934...50,042,193
JBrowse link
G Bhmt betaine-homocysteine S-methyltransferase IDA
ISO
SMPDB
RGD
PMID:15845641 PMID:20814827 PMID:20346934 SMP:00123, RGD:1359026, RGD:7242426, RGD:7242428 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742
JBrowse link
G Chdh choline dehydrogenase ISO SMPDB SMP:00123 NCBI chr16:5,194,269...5,225,541
Ensembl chr16:5,194,269...5,225,537
JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB SMP:00123 NCBI chr 4:104,489,877...104,495,447
Ensembl chr 4:104,488,466...104,495,493
JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit ISO SMPDB SMP:00123 NCBI chr10:25,106,928...25,122,982
Ensembl chr10:25,106,930...25,122,777
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO SMPDB SMP:00123 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO SMPDB SMP:00123 NCBI chr10:44,775,910...44,849,990
Ensembl chr10:44,775,911...44,850,013
JBrowse link
transsulfuration pathway of homocysteine metabolism term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase ISO SMPDB
RGD
PMID:20162368 SMP:00455, RGD:7242427 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Cdo1 cysteine dioxygenase type 1 ISO RGD PMID:20162368 RGD:7242427 NCBI chr18:39,432,473...39,447,253
Ensembl chr18:39,432,474...39,447,296
JBrowse link
G Csad cysteine sulfinic acid decarboxylase ISO RGD PMID:20162368 RGD:7242427 NCBI chr 7:133,308,571...133,337,914
Ensembl chr 7:133,308,574...133,337,615
JBrowse link
G Cth cystathionine gamma-lyase ISO SMPDB
RGD
PMID:20162368 SMP:00455, RGD:7242427 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234
JBrowse link

Pathway Gene Annotations

Disease Annotations Associated with Genes in the homocysteine metabolic pathway
Disease TermsGene Symbols
abdominal aortic aneurysmAhcy , Mthfr , Nnmt
acute biphenotypic leukemiaDot1l
acute kidney failureMthfr
acute lymphoblastic leukemiaMthfr
acute myeloid leukemiaDnmt1 , Mthfr
Acute PainComt
adenocarcinomaDnmt1
AlbuminuriaMthfr
alcohol dependenceComt
alcohol use disorderComt
Alcoholic Fatty LiverDnmt1 , Pemt
alcoholic liver cirrhosisMthfr
allergic diseaseMthfr
alopeciaMthfr
alopecia areataDnmt1
alpha-mannosidosisCarm1
Alzheimer's diseaseMthfr , Pcmt1 , Pnmt
amino acid metabolic disorderAhcy , Gamt
amphetamine abuseComt
amyotrophic lateral sclerosisMthfr
anemiaMthfr
angle-closure glaucomaMthfr
Animal Disease ModelsAhcy
Animal Mammary NeoplasmsComt
ankylosing spondylitisMthfr
anxiety disorderDnmt1
Aortic CoarctationMthfr
Aortic InjuriesPcmt1
aphthous stomatitisMthfr
Arsenic PoisoningAs3mt , Mthfr
Arterial Occlusive DiseasesMthfr , Nnmt
asthmaCarm1 , Dnmt1 , Hnmt , Mthfr , Prmt1 , Prmt3 , Prmt5
AtaxiaDnmt1
atherosclerosisMthfr , Nnmt
atopic dermatitisHnmt
attention deficit hyperactivity disorderAs3mt , Comt , Mthfr
autism spectrum disorderComt , Dnmt1 , Mthfr
autistic disorderAsmt , Comt , Mthfr , Pemt , Prmt6 , Setdb1
autoimmune diseaseDnmt1
autosomal dominant cerebellar ataxia, deafness and narcolepsyDnmt1
autosomal recessive intellectual developmental disorder 51Hnmt
B-Cell Chronic Lymphocytic LeukemiaMthfr
Banti's SyndromeMthfr
Bardet-Biedl syndromeComt
Beckwith-Wiedemann syndromeDnmt1
Binge DrinkingDnmt1
bipolar disorderComt , Mthfr
Birt-Hogg-Dube syndromePemt
Birth WeightAs3mt
brain infarctionHnmt
Brain InjuriesComt , Dnmt1
brain ischemiaMthfr
Brain-Lung-Thyroid SyndromePrmt5
breast cancerComt
Breast NeoplasmsComt , Dnmt1 , Mthfr
Bronchial HyperreactivityHnmt
bronchiolo-alveolar adenocarcinomaDnmt1
Budd-Chiari syndromeMthfr
bulimia nervosaComt
cannabis abuseComt
cannabis dependenceComt
CarcinogenesisDnmt1
carcinomaDnmt1
cardia cancerMthfr
cardiomyopathyDnmt1
cardiovascular system diseaseMthfr
carotid stenosisMthfr
CatalepsyComt
cataractMthfr
cerebellar ataxiaDnmt1
cerebral creatine deficiency syndromeGamt
cerebral infarctionMthfr
cervical cancerMthfr
cervix uteri carcinoma in situMthfr
Charcot-Marie-Tooth diseaseDnmt1
Charcot-Marie-Tooth disease dominant intermediate BCarm1
Charcot-Marie-Tooth disease type 2Mthfr
Chemical and Drug Induced Liver InjuryComt , Mthfr
Child Behavior DisordersComt
cholangiocarcinomaMthfr
choline deficiency diseaseDnmt1
choreatic diseaseDnmt1
Chromosome 11, Partial Trisomy 11qNnmt
chromosome 18p deletion syndromeRnmt
chromosome 1p36 deletion syndromeIcmt , Mthfr
chromosome 22q11.2 deletion syndrome, distalComt
chromosome 22q11.2 microduplication syndromeComt
Chronic HepatitisGnmt
chronic kidney diseaseMthfr
chronic myeloid leukemiaDnmt1 , Mthfr
clear cell renal cell carcinomaDnmt1 , Mthfr
cleft lipMthfr
cleft palatePrmt1
clubfootMthfr
cocaine dependenceComt
Cocaine-Related DisordersComt , Prmt6
cognitive disorderComt
Cognitive DysfunctionMthfr
Colonic NeoplasmsDnmt1 , Mthfr
Colorectal NeoplasmsDnmt1 , Dot1l , Mthfr
common variable immunodeficiency 2Pemt
congenital heart diseaseDnmt1 , Mthfr
congestive heart failureDnmt1 , Pcmt1
Conotruncal Cardiac DefectsMthfr
ContusionsPnmt
coronary artery diseaseMthfr , Nnmt
Coronary DiseaseMthfr
coronary restenosisMthfr
Crohn's diseaseMthfr
cyclic hematopoiesisGamt
Cytomegalovirus InfectionsMthfr
dementiaDnmt1
depressive disorderMthfr
desmoplastic/nodular medulloblastomaAs3mt
developmental and epileptic encephalopathy 12Prmt1
Developmental DisabilitiesAs3mt , Mthfr
Developmental DiseaseDot1l
dextro-looped transposition of the great arteriesMthfr
diabetes mellitusMthfr
diabetic angiopathyMthfr
Diabetic NephropathiesMthfr , Prmt1
diabetic retinopathyMthfr
diffuse large B-cell lymphomaMthfr , Prmt5
DiGeorge syndromeComt
dilated cardiomyopathyComt
dilated cardiomyopathy 1ADot1l
disease of mental healthComt
Down syndromeHnmt , Mthfr
drug allergyHnmt
drug dependenceComt
Drug EruptionsMthfr
Drug-Induced DyskinesiaComt
Drug-Related Side Effects and Adverse ReactionsMthfr
Ehlers-Danlos syndrome kyphoscoliotic type 1Mthfr
end stage renal diseaseMthfr
endometrial cancerComt
Endometrial NeoplasmsDnmt1 , Mthfr
Endometrioid CarcinomasDnmt1
endometriosisDnmt1
endometriosis of uterusDnmt1
epilepsyComt , Gamt
epilepsy with generalized tonic-clonic seizuresMthfr
episodic ataxia type 2Carm1
essential tremorHnmt
estrogen-receptor positive breast cancerCarm1
eumycotic mycetomaComt
Experimental ArthritisAhcy , Dnmt1
Experimental Autoimmune EncephalomyelitisComt
Experimental Diabetes MellitusComt , Mthfr , Pemt , Pnmt
Experimental Liver NeoplasmsPemt
eye diseaseMthfr
factor VIII deficiencyMthfr
Familial Atrial Fibrillation 6Mthfr
familial hypercholesterolemiaCarm1
familial hypertrophic cardiomyopathyComt
familial Mediterranean feverMthfr
FatigueComt
Female InfertilityMthfr
fetal alcohol spectrum disorderDnmt1
Fetal Growth RetardationComt , Dnmt1
fibromyalgiaComt
Folate-Sensitive Neural Tube DefectsMthfr
follicular lymphomaMthfr
gastrointestinal stromal tumorMthfr , Setdb1
gastrointestinal system diseaseMthfr
genetic diseaseAhcy , Dnmt1 , Dot1l , Gamt , Mthfr
Glandular and Epithelial NeoplasmsAs3mt
glomerulonephritisMthfr
Glucocorticoid Deficiency 5Comt
glutaric acidemia ICarm1
glycine N-methyltransferase deficiencyGnmt
graft-versus-host diseaseMthfr
Graves' diseaseDnmt1 , Mthfr
guanidinoacetate methyltransferase deficiencyGamt
Habitual AbortionsMthfr
Hearing LossDnmt1 , Mthfr
Hearing Loss, Cisplatin-InducedComt
Helicobacter InfectionsMthfr
Hematologic NeoplasmsMthfr
hematopoietic system diseaseMthfr
hemorrhagic diseaseComt
hepatic veno-occlusive diseaseMthfr
hepatitisGnmt
hepatitis BMthfr
hepatocellular adenomaCarm1
hepatocellular carcinomaCarm1 , Comt , Dnmt1 , Gnmt , Mthfr , Nnmt
hereditary sensory neuropathyDnmt1
hereditary sensory neuropathy type 1EDnmt1
heroin dependenceComt
high grade gliomaPcmt1 , Setdb1
histiocytic sarcomaSuv39h2
Huntington's diseaseHnmt , Setdb1
HyperalgesiaComt
hyperhomocysteinemiaAhcy , Gnmt , Mthfr
hypermethioninemiaAhcy , Gnmt
hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolaseAhcy
hypertensionAhcy , Comt , Pnmt
hyperthyroidismMthfr
hypertrophic cardiomyopathyDnmt1
hypertrophic cardiomyopathy 25Pnmt
hypoglycemiaPnmt
hypoparathyroidism-deafness-renal disease syndromeSuv39h2 , Trdmt1
hypopituitarismMthfr
hypothyroidismMthfr
HypoxiaAhcy
idiopathic scoliosisPrmt5
Imerslund-Grasbeck SyndromeTrdmt1
immunodeficiency 42Setdb1
immunodeficiency 51Comt
infantile Refsum diseaseGnmt
inflammatory bowel diseaseMthfr
Inherited Blood Coagulation DiseaseMthfr
Insulin ResistanceAs3mt
intellectual disabilityComt , Gamt , Mthfr , Nnmt , Prmt3 , Rnmt
intermittent explosive disorderComt
intracranial sinus thrombosisMthfr
ischemiaMthfr
Joubert syndrome 1Pemt
kidney diseaseMthfr
kidney failureMthfr
Kuhnt-Junius degenerationMthfr
Left Ventricular HypertrophyMthfr
Leigh diseaseGamt
leiomyomaComt
LeukoencephalopathiesMthfr
leukopeniaMthfr
Leydig cell tumorPrmt5
liver benign neoplasmMthfr
liver cirrhosisDnmt1 , Mthfr , Pemt
liver diseaseMthfr
Liver NeoplasmsGnmt
long QT syndromeAhcy
lung adenocarcinomaAhcy , Dot1l
lung cancerComt , Dnmt1 , Setdb1
lung carcinomaDnmt1
Lung NeoplasmsAs3mt , Mthfr
lung non-small cell carcinomaDnmt1
lung small cell carcinomaMthfr
Lymphatic MetastasisComt
lymphomaMthfr
lysinuric protein intolerancePrmt5
male infertilityMthfr
malignant astrocytomaPcmt1
malignant mesotheliomaSetdb1
MalnutritionMthfr
Maxillofacial AbnormalitiesMthfr
medulloblastomaDnmt1 , Prmt5
megacolonComt
melanomaSetdb1
Memory DisordersComt
Meniere's diseaseMthfr
meningiomaDnmt1
metabolic dysfunction-associated steatotic liver diseaseAhcy , Gnmt , Mthfr , Pemt
Metabolic SyndromeNnmt
Methylenetetrahydrofolate Reductase DeficiencyMthfr
MHC class II deficiencySetdb1
Micronuclei, Chromosome-DefectiveAs3mt
Microsatellite InstabilityMthfr
Microvascular AnginaMthfr
middle cerebral artery infarctionDnmt1
migraineMthfr
migraine with auraMthfr
mitochondrial complex I deficiencyGamt
mitochondrial DNA depletion syndrome 17Mrm2
mitral valve diseaseMthfr
morphine dependenceComt
Mowat-Wilson syndromeHnmt
Mthfr Deficiency, Thermolabile TypeMthfr
mucoepidermoid carcinomaDnmt1
mucositisMthfr
multiple myelomaMthfr , Prmt5
multiple sclerosisPnmt
Multisystem Autoimmune Disease with Facial DysmorphismAhcy
Musculoskeletal PainComt
myelodysplastic syndromeDnmt1
myeloid neoplasmMthfr
myelomeningoceleMthfr
myocardial infarctionMthfr
Neck PainComt
NecrosisMthfr
neonatal abstinence syndromeComt
Neoplasm InvasivenessDnmt1
Neoplasm MetastasisMthfr
nephroblastomaMthfr
nephrosclerosisMthfr
nervous system diseaseMthfr
Nervous System MalformationsGamt
neural tube defectMthfr
Neurodevelopmental DisordersComt , Dot1l , Icmt
neutropeniaMthfr
nicotine dependenceComt
non-arteritic anterior ischemic optic neuropathyMthfr
non-Hodgkin lymphomaMthfr
nuclear type mitochondrial complex I deficiency 1Gamt
obesityComt
obsessive-compulsive disorderComt
open-angle glaucomaMthfr
opiate dependenceComt
Oral Lichen PlanusDnmt1
oral squamous cell carcinomaMthfr
osteonecrosisMthfr
osteosarcomaMthfr
ovarian cancerComt
Ovarian NeoplasmsDnmt1
PainComt
pancreatic cancerMthfr
pancreatic ductal carcinomaDnmt1
Pancreatic Intraepithelial NeoplasiaDnmt1
panic disorderComt
papillomavirus infectious diseaseMthfr
ParakeratosisSuv39h2
Paranoid DisordersComt
parathyroid carcinomaSetdb1
Parkinson's diseaseHnmt , Mthfr
ParkinsonismComt
pathological gamblingComt
peripheral artery diseaseMthfr
Peritoneal FibrosisDnmt1
pheochromocytomaComt
Pick's diseaseHnmt
Pituitary Stalk Interruption SyndromeDnmt1
Polyarteritis Nodosa, Childhood-OnsetComt
polycystic ovary syndromeComt
portal vein thrombosisMthfr
Potocki-Lupski syndromePemt
pre-eclampsiaComt , Gamt
Prenatal Exposure Delayed EffectsMthfr
primary immunodeficiency diseaseComt
progressive myoclonus epilepsy 9Dot1l
prostate adenocarcinomaDnmt1
prostate cancerComt , Dnmt1 , Mthfr , Setdb1
prostate carcinoma in situCarm1 , Dnmt1
Prostatic NeoplasmsCarm1 , Comt , Dnmt1 , Dot1l , Gnmt , Mthfr , Setdb1
psoriasisCarm1 , Comt
Pulmonary Arterial HypertensionNnmt
pulmonary embolismMthfr
pyridoxine deficiency anemiaAhcy
rectal benign neoplasmMthfr
RecurrenceComt
renal artery diseaseMthfr
renal cell carcinomaComt , Mthfr , Nnmt
Reperfusion InjuryPnmt
retinal diseaseMthfr
retinal vein occlusionMthfr
Rett syndromeSetdb1
RhabdomyolysisAhcy
rheumatoid arthritisDnmt1 , Mthfr
rhinitisHnmt
schizophreniaAs3mt , Comt , Dnmt1 , Hnmt , Mthfr , Setdb1
Schizophrenia Spectrum and Other Psychotic DisordersComt
seminomaPrmt5
severe combined immunodeficiency with sensitivity to ionizing radiationSuv39h2
severe congenital neutropenia 3Setdb1
severe congenital neutropenia 5Setdb1
sickle cell anemiaMthfr
skin diseaseMthfr
sleep disorderDnmt1
smallpoxMthfr
spastic ataxiaDnmt1
Spastic ParaparesisDnmt1
Specific Granule DeficiencyPrmt5
spina bifidaMthfr , Pcmt1
spinal cord diseaseMthfr
sporadic breast cancerMthfr
squamous cell carcinomaMthfr
steatotic liver diseaseMthfr
stomach cancerMthfr
Stomach NeoplasmsDnmt1 , Mthfr
StrokeMthfr
Subacute Necrotizing Encephalopathy of Leigh, InfantileGamt
Sudden Hearing LossMthfr
SunburnAhcy
systemic lupus erythematosusDnmt1
Temporomandibular Joint DisordersComt
tetralogy of FallotMthfr
thrombocytopeniaMthfr
thrombophiliaMthfr
thrombophilia due to thrombin defectMthfr
thrombosisMthfr
Thrombotic MicroangiopathiesMthfr
thyrotoxicosisMthfr
Tobacco Use DisorderComt
transient cerebral ischemiaGamt
transitional cell carcinomaMthfr
Triple Negative Breast NeoplasmsPrmt5
type 1 diabetes mellitusMthfr
type 2 diabetes mellitusDnmt1 , Mthfr
ulcerative colitisHnmt
uremiaComt
urinary bladder cancerAs3mt , Comt , Dnmt1 , Mthfr
urticariaHnmt
Uterine Cervical NeoplasmsDnmt1 , Mthfr
Vascular CalcificationMthfr
vascular dementiaMthfr
vascular diseaseMthfr
velocardiofacial syndromeComt
Venous ThromboembolismMthfr
Venous ThrombosisComt , Mthfr
Ventricular Dysfunction, LeftNnmt
vitiligoComt
Wilson diseaseAhcy , Asmt
withdrawal disorderComt
Zellweger syndromeGnmt
Pathway Annotations Associated with Genes in the homocysteine metabolic pathway
Pathway TermsGene Symbols
5'-end pre-mRNA capping pathwayRnmt
AGAT deficiency pathwayGamt
alkaptonuria pathwayComt , Pnmt
altered folate cycle metabolic pathwayMthfr
altered folate mediated one-carbon metabolic pathwayMthfr
androgen signaling pathwayCarm1 , Prmt1
arginine and proline metabolic pathwayGamt
aromatic L-amino acid decarboxylase deficiency pathwayPnmt
catecholamine biosynthetic pathwayPnmt
choline metabolic pathwayAhcy , Pemt
creatine metabolic pathwayGamt
cysteine and methionine metabolic pathwayAhcy , Dnmt1 , Trdmt1
dihydropyrimidine dehydrogenase deficiency pathwayGamt , Gnmt
dimethylglycine dehydrogenase deficiency pathwayGamt , Gnmt
disulfiram pharmacodynamics pathwayComt , Pnmt
DNA modification pathwayDnmt1
dopamine beta-hydroxylase deficiency pathwayComt , Pnmt
epinephrine biosynthetic pathwayPnmt
estrogen signaling pathwayCarm1 , Prmt1
folate cycle metabolic pathwayMthfr
folate mediated one-carbon metabolic pathwayGnmt , Mthfr
folate metabolic pathwayGnmt , Mthfr
glycerophospholipid metabolic pathwayPemt
glycine N-methyltransferase deficiency pathwayAhcy , Dnmt1 , Mthfr
glycine, serine and threonine metabolic pathwayGamt , Gnmt
guanidinoacetate methyltransferase deficiency pathwayGamt
gyrate atrophy pathwayGamt
hawkinsinuria pathwayComt , Pnmt
hereditary folate malabsorption pathwayMthfr
histidine metabolic pathwayHnmt , Prmt3
histidinemia pathwayHnmt , Prmt3
histone modification pathwayCarm1 , Dot1l , Prmt1 , Prmt5 , Prmt6 , Setdb1 , Suv39h2
homocysteine metabolic pathwayAhcy , As3mt , Asmt , Carm1 , Comt , Dnmt1 , Dot1l , Gamt , Gnmt , Hnmt , Icmt , Mrm2 , Mthfr , Nnmt , Pcmt1 , Pemt , Pnmt , Prmt1 , Prmt3 , Prmt5 , Prmt6 , Rnmt , Setdb1 , Suv39h2 , Trdmt1
homocystinuria pathwayAhcy , Dnmt1 , Mthfr
hypermethioninemia pathwayAhcy , Dnmt1 , Mthfr
hypermethioninemia pathwayAhcy , Dnmt1 , Mthfr
hyperprolinemia type I pathwayGamt
hyperprolinemia type II pathwayGamt
lysine degradation pathwayDot1l , Setdb1 , Suv39h2
methionine cycle/metabolic pathwayAhcy , As3mt , Asmt , Carm1 , Comt , Dnmt1 , Dot1l , Gamt , Gnmt , Hnmt , Icmt , Mrm2 , Mthfr , Nnmt , Pcmt1 , Pemt , Pnmt , Prmt1 , Prmt3 , Prmt5 , Prmt6 , Rnmt , Setdb1 , Suv39h2 , Trdmt1
methotrexate pharmacodynamics pathwayMthfr
methylenetetrahydrofolate reductase deficiency pathwayAhcy , Dnmt1 , Mthfr
monoterpenoid biosynthetic pathwayNnmt
mRNA decay pathwayRnmt
niacin metabolic pathwayNnmt
nonketotic hyperglycinemia pathwayGamt , Gnmt
ornithine translocase deficiency pathwayGamt
p53 signaling pathwayPrmt5
phenytoin pharmacodynamics pathwayComt
prolidase deficiency pathwayGamt
remethylation pathway of homocysteine metabolism - cobalamin dependentMthfr
remethylation pathway of homocysteine metabolism - cobalamin independent, betaine dependentAhcy , Pemt
RNA transport pathwayPrmt5
sarcosinemia pathwayGamt , Gnmt
selenoamino acid metabolic pathwayAhcy
steroid hormone biosynthetic pathwayComt
tryptophan metabolic pathwayAsmt
tyrosine metabolic pathwayComt , Pnmt
tyrosinemia type I pathwayComt , Pnmt
Wnt signaling, non-canonical pathwaySetdb1
Phenotype Annotations Associated with Genes in the homocysteine metabolic pathway

References Associated with the homocysteine metabolic pathway:

Ontology Path Diagram:

paths to the root
paths to the root

Import into Pathway Studio: