Gene: Setdb1 (SET domain, bifurcated 1) Rattus norvegicus
Symbol: Setdb1
Name: SET domain, bifurcated 1
Description: ENCODES a protein that exhibits DNA binding (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN response to ethanol; response to vitamin; bone development (ortholog); PARTICIPATES IN homocysteine metabolic pathway; methionine cycle/metabolic pathway; Wnt signaling, non-canonical pathway; ASSOCIATED WITH Autistic Disorder (ortholog); Glioma (ortholog); Huntington Disease (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear chromatin (ortholog); INTERACTS WITH bisphenol A; glyphosate; T-2 Toxin
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: histone-lysine N-methyltransferase SETDB1; LOC310668; LOC689883; similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4 (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET)
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02196,495,867 - 196,527,412 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.02215,994,295 - 216,025,842 (-)NCBIRnor5.0rn5Rnor5.0
RGSC_v3.42190,232,228 - 190,264,309 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12190,195,015 - 190,227,043 (-)NCBI
Celera2175,432,236 - 175,463,195 (-)NCBI
Cytogenetic Map2q34NCBImapview
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
 
More on Setdb1
Entrez Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Map Viewer
Vista
Vista + UCSC

RGD Object Information
RGD ID: 1308370
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2016-09-13
Status: ACTIVE