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Gene: Arhgef37 (Rho guanine nucleotide exchange factor 37) Rattus norvegicus

Analyze

Symbol:

Arhgef37

Name:

Rho guanine nucleotide exchange factor 37

RGD ID:

1560471

Description:

Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in synapse. Predicted to be active in cytoplasm. Orthologous to human ARHGEF37 (Rho guanine nucleotide exchange factor 37); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307398; probable guanine nucleotide exchange factor FLJ41603 homolog; protein 2-88; RGD1560471; Rho guanine nucleotide exchange factor (GEF) 37; scaffold protein tuba 3; similar to hypothetical protein 4933429F08

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	57,205,621 - 57,271,284 (-)	NCBI		GRCr8
mRatBN7.2	18	54,935,256 - 55,001,017 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	54,949,110 - 55,000,669 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	57,051,280 - 57,094,308 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	57,765,896 - 57,808,923 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	55,581,554 - 55,624,552 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	56,817,986 - 56,871,159 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	56,817,988 - 56,870,839 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	56,048,373 - 56,099,860 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	57,473,010 - 57,524,775 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	53,099,857 - 53,151,266 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4-dichlorophenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

calcitriol (ISO)

cisplatin (ISO)

coumestrol (ISO)

DDE (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

entinostat (ISO)

FR900359 (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (EXP,ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

Triptolide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA,IEA)

synapse (IEA)

Molecular Function

guanyl-nucleotide exchange factor activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Arhgef37
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	57,205,621 - 57,271,284 (-)	NCBI		GRCr8
mRatBN7.2	18	54,935,256 - 55,001,017 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	54,949,110 - 55,000,669 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	57,051,280 - 57,094,308 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	57,765,896 - 57,808,923 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	55,581,554 - 55,624,552 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	56,817,986 - 56,871,159 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	56,817,988 - 56,870,839 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	56,048,373 - 56,099,860 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	57,473,010 - 57,524,775 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	53,099,857 - 53,151,266 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

ARHGEF37
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	149,551,625 - 149,634,968 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	149,551,947 - 149,634,968 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	148,961,061 - 149,014,531 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	148,941,328 - 148,994,720 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	145,043,054 - 145,096,412 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	144,107,762 - 144,161,236 (+)	NCBI		HuRef
CHM1_1	5	148,393,556 - 148,446,911 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	150,086,803 - 150,169,655 (+)	NCBI		T2T-CHM13v2.0

Arhgef37
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	61,624,728 - 61,669,994 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	61,624,728 - 61,669,665 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	61,491,657 - 61,536,928 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	61,491,657 - 61,536,594 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	61,653,448 - 61,696,190 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	61,619,163 - 61,634,648 (-)	NCBI		MGSCv36	mm8
Celera	18	62,776,175 - 62,819,028 (-)	NCBI		Celera
Cytogenetic Map	18	E1	NCBI
cM Map	18	34.62	NCBI

Arhgef37
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	4,858,355 - 4,900,786 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	4,850,120 - 4,900,483 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGEF37
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	144,780,601 - 144,864,721 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	142,920,150 - 143,004,270 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	145,006,880 - 145,060,447 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	151,031,688 - 151,068,837 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	150,986,462 - 151,068,837 (+)	Ensembl	panpan1.1		panPan2

ARHGEF37
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	59,357,834 - 59,413,012 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	59,357,822 - 59,412,752 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	59,123,557 - 59,178,961 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	59,840,209 - 59,895,600 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	59,840,209 - 59,895,581 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	59,627,247 - 59,665,508 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	59,741,493 - 59,797,047 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	60,272,603 - 60,327,820 (-)	NCBI		UU_Cfam_GSD_1.0

Arhgef37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	143,703,422 - 143,753,915 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	5,275,862 - 5,327,928 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	5,277,448 - 5,328,028 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGEF37
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	150,660,685 - 150,747,220 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	150,662,470 - 150,751,648 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	157,427,173 - 157,504,238 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGEF37
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	52,198,122 - 52,252,194 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	52,198,075 - 52,252,273 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	25,468,693 - 25,523,213 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgef37
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	8,911,821 - 8,945,016 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	8,894,678 - 8,944,316 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arhgef37
381 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	395
Count of miRNA genes:	211
Interacting mature miRNAs:	276
Transcripts:	ENSRNOT00000032189
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
1331730	Scl27	Serum cholesterol level QTL 27	3.826		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	52292875	59796643	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	59796643	Rat
1298072	Cia26	Collagen induced arthritis QTL 26	3.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	54709769	83828827	Rat
1331736	Bp227	Blood pressure QTL 227	2.791		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	46718763	59796643	Rat
1300125	Rf26	Renal function QTL 26	3.2		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	18	52539863	65844950	Rat
6893683	Bw110	Body weight QTL 110	2.7	0.002	body mass (VT:0001259)	body weight (CMO:0000012)	18	43345022	83828827	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	61698465	Rat
9589041	Epfw12	Epididymal fat weight QTL 12	17.08	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	18	46640675	83828827	Rat
8694432	Bw165	Body weight QTL 165	3.81	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	46640675	83828827	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	29792965	74792965	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	59796643	Rat
61360	Eaey	Experimental allergic encephalomyelitis QTL y	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	18	46988939	60377753	Rat
2300177	Bmd65	Bone mineral density QTL 65	19.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31359408	83218561	Rat
12880368	Bw187	Body weight QTL 187		0.045	body mass (VT:0001259)	body weight (CMO:0000012)	18	52539763	76104388	Rat
61367	Iddm4	Insulin dependent diabetes mellitus QTL 4	2.33	0.0074	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	38192455	83192455	Rat
2293658	Bmd23	Bone mineral density QTL 23	7.3	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	18	51464733	63636873	Rat
1359020	Ppulsi2	Prepulse inhibition QTL 2	2.71		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	18	52292875	73997283	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	29792965	74792965	Rat
1331752	Bw27	Body weight QTL 27	2.963		body mass (VT:0001259)	body weight (CMO:0000012)	18	52292875	65845095	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	29792965	74792965	Rat
12904069	Cm123	Cardiac mass QTL 123		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	52539763	76104388	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359408	59796643	Rat
12904070	Cm124	Cardiac mass QTL 124		0.01	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	52539763	76104388	Rat
2303584	Gluco55	Glucose level QTL 55	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	18	48520044	83828827	Rat
12904071	Am18	Aortic mass QTL 18		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	52539763	76104388	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31271681	60377755	Rat
12904067	Cm122	Cardiac mass QTL 122		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	52539763	76104388	Rat
1331806	Bp229	Blood pressure QTL 229	4.36484		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	46718763	57867167	Rat
2301417	Bp319	Blood pressure QTL 319		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	52539763	76104388	Rat
12904073	Kidm71	Kidney mass QTL 71		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	52539763	76104388	Rat
1331780	Bp238	Blood pressure QTL 238	3.269		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	46718763	59796643	Rat
738008	Hcar14	Hepatocarcinoma resistance QTL 14	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion number (CMO:0001462)	18	51464733	83218561	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	31359408	59796643	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
631518	Bw11	Body weight QTL 11	2.8		body mass (VT:0001259)	body weight (CMO:0000012)	18	35870723	80870723	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	46718935	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31359530	59796478	Rat
8694366	Abfw8	Abdominal fat weight QTL 8	6.38	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	18	46640675	83828827	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	46718935	59796478	Rat
631509	Sald2	Serum aldosterone level QTL 2	2.9		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	18	52539763	69140759	Rat
2300157	Bmd66	Bone mineral density QTL 66	13.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
738005	Anxrr11	Anxiety related response QTL 11	3.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	18	30039813	75039813	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	46718935	59796478	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	31393320	77209694	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
2293704	Bss35	Bone structure and strength QTL 35	4.59	0.0002	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	18	28964853	73964853	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	29792965	74792965	Rat
1600375	Mcs22	Mammary carcinoma susceptibility QTL 22	3.3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	52539763	63933058	Rat
2303571	Bw92	Body weight QTL 92	3		body mass (VT:0001259)	body weight (CMO:0000012)	18	48520044	83828827	Rat
1598826	Anxrr20	Anxiety related response QTL 20	3.04		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	18	41432971	83828827	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	31359408	70263868	Rat
7411719	Strs5	Sensitivity to stroke QTL 5	9.4		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	18	49999958	65845095	Rat

Markers in Region

RH144289

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	54,957,812 - 54,958,072 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	56,826,691 - 56,826,950	NCBI	Rnor6.0
Rnor_5.0	18	56,057,078 - 56,057,337	UniSTS	Rnor5.0
RGSC_v3.4	18	57,481,715 - 57,481,974	UniSTS	RGSC3.4
Celera	18	53,108,562 - 53,108,821	UniSTS
RH 3.4 Map	18	541.0	UniSTS
Cytogenetic Map	18	q12.1	UniSTS

BI277765

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	54,957,718 - 54,957,879 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	56,826,597 - 56,826,757	NCBI	Rnor6.0
Rnor_5.0	18	56,056,984 - 56,057,144	UniSTS	Rnor5.0
RGSC_v3.4	18	57,481,621 - 57,481,781	UniSTS	RGSC3.4
Celera	18	53,108,468 - 53,108,628	UniSTS
Cytogenetic Map	18	q12.1	UniSTS

BE107988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	54,958,920 - 54,959,097 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	56,827,799 - 56,827,975	NCBI	Rnor6.0
Rnor_5.0	18	56,058,186 - 56,058,362	UniSTS	Rnor5.0
RGSC_v3.4	18	57,482,823 - 57,482,999	UniSTS	RGSC3.4
Celera	18	53,109,670 - 53,109,846	UniSTS
RH 3.4 Map	18	541.5	UniSTS
Cytogenetic Map	18	q12.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB199794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000032189 ⟹ ENSRNOP00000037964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	54,949,110 - 55,000,669 (-)	Ensembl
Rnor_6.0 Ensembl	18	56,817,988 - 56,870,839 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087188 ⟹ ENSRNOP00000069658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	56,825,396 - 56,870,801 (-)	Ensembl

RefSeq Acc Id:

NM_001100974 ⟹ NP_001094444

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,271,031 (-)	NCBI
mRatBN7.2	18	54,957,668 - 55,000,669 (-)	NCBI
Rnor_6.0	18	56,817,986 - 56,870,839 (-)	NCBI
Rnor_5.0	18	56,048,373 - 56,099,860 (-)	NCBI
RGSC_v3.4	18	57,473,010 - 57,524,775 (-)	RGD
Celera	18	53,099,857 - 53,151,266 (-)	RGD

Sequence:

show sequence

GGCAACTGACAAAGGCGGGGGCGCGCTCTGCGCGTGCACAGCAGACAGAGGAGCTGCACTCGCA
GCCGGAGCCCAGCGGGTGCGAGTGACACCGGAGGGCATCCGGCGCGTGCGCGAACCTGTGGACA
TGGCTGACTTTGAAACAGATGAGGCCTCTTCCAAGTCAGAGAGCCCTGAGCAGGAAGGCCAGGG
TTCTGAGGACAAATCTCTGCTCCATCAGAGGCTGGCCATCAGAGAGCTCATCGACACAGAAGTC
TCCTACTTGCACACACTCCGACTCTGTACCTCTGACATCAGAGGCCACCTACAGCAGCTGCCGC
CAGGAGATCTGGACATACTGTTCTCAAACATCGATGACATCATCCAAGTGAGCAGCAGATTCCT
TCACGGGCTGCAGGAGACAGCCTGCAAGGAAGAGAAACAAGCACACTTGATTGGTAACTTATTC
CTGGAATTCCAAGAGGAGCTTGAACAAGTCTATAAAGTCTACTGTGCCAACTATGACCAGGCCC
TGCTGCTGGTCAAGGCATACCAGAAGGAGCCGGAACTCCAGAAGGAGATCCAGGGCATCATCGA
AGCTGCAGTGCCACAAGCTGGACCTTCGGGTCTCAGTTTCTTACTTGTAATCCCTCTGCAGAGG
ATTACCAAGTACCCCCTCCTGCTGCAGAAAATCCTGGAGAACACACCTGCGGATGCCAGTGCCC
ACCCTGTCCTTCAGAGAGCCACCTCTGCCCTCCAGGATGTGAACAGCAATATCAACGAGTACAA
GATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAGTGGAGCAGCTGAGCCTTCGGGAGCGGCTG
GCCCGCATCAACACCCATACTCTTTCCAAGAAGACCACCAGGCTGAGCCAGCTGCTGAAGCAGG
AGGCGGGGCTCGTACCCAGGACAGAAGACAAGGAATTTGATGACTTGGAGGAGAGATTCCAGTG
GGTGTCTCTGTGCGTGACAGAGCTGAAGAGCAATGTGGCAGCTTACATGGATAATCTGGAGGCT
TTCCTCTGCTTCCGGCCACACGAGCGGAACCTGGATATCCCTGGGGGAGCTGCGGAACAGTACT
GCAGCCTAGCGAGGGACCTTCAGCTCCAGGCCTTCCTGCAGTTTAAGCAGCGGTTAACAGGCCT
GGTGTGGCAACCATTGTGCAGTCTGGCCAGAGCCCTGGTTGGCCCTCAGAACTTGATCAAGAAA
CGTCTGGACAAACTCCTGGACTTCGAGAGAGTAGAAGAAAAACTGTTGGATGTGGGCAGTGTGA
CCTATGAGGAAGAGGCGGCCCGGCACACGTACCAGGCACTCAACTCCTTGATAGTGGCTGAGCT
CCCACAGTTTAACCACCTCGTCATGCAGTGGCTGGGCCAGATTCTGCGCACATTTGTGGTCCTC
CAGAGAGACCTTGCAGACCAAGTGCTGCGAAGGGCAGAGAGCAGCATGGCCCTGCTGCCTCATC
GCCACGTCTCCGAGCCGGACTTCCAGAAGCTGCTGGAGGACACGCTAGGCCAGAGCAGTAGCCA
GCTCCGCCACTTTCGGGAGAGCTTTGAGAAAGTGCTTCCACCCTCCACCTCGCAGCCACTCCTT
CCAGGGTCTGAACACCAGATGCAATCTCTCCTCACCAGATATGGCCCTGGGAAGATATACCAGG
TGACAAGCAACATCAATGGCACTGGGACCCTGGACCTGACACTGCCTCGGGGCCAAATCGTGGC
CCTTCTACAAAACAAGGACACCAAAGGCAACAACAGTCGCTGGCTGGTAGACACAGGGGGACAC
CGGGGATACGTGCCAGCTGGAAAACTTCAGCTATATCACCCTATCAATCCCAGTGAGAAGGAGC
CCAGACGCCAGACAGGGATGCCTGAAGACTACTGGCTTCCAACCCCAGAGCCCACCCAACCCTC
TGTCCCCACTGTCCCGACCATGAGCCAGGTGGTGGCCGTGTACCCTTTTGTGGCCAGGAGCACC
CACGAGTTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCTGGAAGCCCAAGACAAGAAGGGGA
ACCCAGAATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGATATGTACCTTCCAACTTTCTGGC
CAGGACTCCGAGTCCAACTCCCCGGGGCTGGAATCTTCCCTCTTAGCATGACCTCTTGGGAACC
CCATTCCTAAGGAAAGGCGGAGGCTTAAAAGCTGTGTGACCTAGGGGGGATGGCGCAAAGCACA
GTGGGAATGGGAGAGGCGTGAAGGGCACCCAGAAGGCAGCAGGAAGTGATTACTAGGCCTTACA
GAATGCCTGGTGTGGGAGGCCACAGTGGGTGGTTCGGCAGTGCCACTGTGATCTGCATAAAGAA
GCCATCTCTAGGCCACAGCTGATTAGCTAAGGCTTGCCACAGCTCGAAGCTCACCCTACCTCTT
CTTACCTCTTTCATGTCTAGGATGAATGTGGCCTGTGTTAGTTGCAGGTGGGGCCTCTCTGAAG
ACGACCAGGCCTGCTTGGCTCTGTAGTACACTTCCCACAGTGTTGCCAGGAAACACCGTGGCTC
GTCAGTCATCTTTTCTTTCTTACTGCCTTGCACTGAGTTATTGTGAACAGTGAACTGTGGAGAG
TCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGGAGATTGTCTACTGTGTCTGGGAATGG
GTGTGGTCTCTGCATAGGTCTGGAACGTGTGTACAAACTTGTAGGTGGTTCCAGGGAAGAGGGG
AATTTGAGGGTGAATTAGTGGGTGTGAGAGGCTGATTGCAATGGTAACTACTGGTGTTTTCTTC
AGAGTAGGAAACAAAGGAACTTGTGACATAGGTGACTACTGGCCTGGCAAGTCGGAGCTGCGGG
GAGGTGACATGAAGGAATCCAGTTTATGTGATAAATCCAGGTACTATCACATAGAAAGCTCTGA
AGAGCAGCGATCTTAACAAAACAGAACAAGACAAAACAACAAACAATTAAACAACCCTCGGCAG
CAACCATGGCAGCCAGCCACAGTGGAGTTCATTCTCCGTAGGATCCCCAAGAAACAAGCATTGG
GATGGAGCCCTGGGACTCTCCCGTGAGGCAGGGCCAAGCCCAGAGCTATTAGTACGTTGCCTTG
TTGCTTCAAAGCAATCTCCAGCATTTCTCGAGCACTCGTGTGTCCCAGCTGCTGAGCCAGCCAA
GTGGCTTGGAAGCACAGACTCATTTATGCTGTTACGTCACAATGATGCTCTGGATGCTGCGATC
GCACGTCCTCTGCAAGAAGAACTACAGGCACTGATGGGTGACAATGACGTCGGGGAATACTGAT
CATCATGAATGAGTGCCTTAACATCTGCCATGCACGAGCGCTGTGCTGAGCGTCTCACACACAT
CTGTCTCCATGACATCAGCGTCATGCAGAAACTGCTATCTCCCCCTTTTAAAGATGAGAAAACT
GAGACTCAAGGCACTCGAGTTACCAGAAGGCCGTGGAGAGAGAGGCCCGGAGCTTGGATCTCAA
CTCTGGTGTATGGTTGGGTTGACTTTGATGAGGTGAGGAAGCAGAGCAATCACGTGAGGAGCTT
CTTCTGTGGGCTGAGCTTTGACCTCTTACCCGTGTCTTCCCGGCATCCCTGTGTCCTGTTGCTA
TGCCTCTCCACAGTTTTCAATGCACTGCTGTCCCATATGAGTACGAAGAGTCCCAAACTGTGAA
GGGGTCCTAGAGGCCAGGATGTATTGGAAGCCATTCTAGTAGTTAGGAATATCACAGGATTTGA
ACACACCTGACTCCAGCTCGTCTGTTCACTGTACTCTTAGAGAGCTCCCCTGACTATAACAGAG
CACCAAGCGCCTACCTTTTCCTTTCCCCACACTCTTAAGCTCTGGGTTCATGTGGACTCATGTT
GGATCCGCATGGCCTGTGTGTATTTCCCACTTCTGGGTCCTTCTGCCTACCTCCGTAGTCTTCA
GACCCACCACCAGGTCTGCTCAGATATGCAGGCTTTATTACCACTCCTTTTAGGGCTCTCGATC
AGGGCCACGCACTCTGGTTCTTGCTCTGGTTCCTGCCCTTATCCCCTCTGTGAACCGCGCTCTT
TGACCGAGCGGAATCATCTGCAATGCTGTCTCTGCTTCTTGGCCACACACTCTTACTTCAGAGT
GAAACACTGGTGTCCCTACCTTCCTGCTTTAAGCATCTTTCAACCCTCAGTAACTGTCGCCTCT
TCCAGGAAGCTTTCCTGGCTTTGCTTAGGCACTCTTCCTACGTGTGTATTTATGGGGATCTTCT
CCTTTTGTAAGTGAGATTTTTCTTAAGGGTCTCTCCCGCTGCGCTAGCTCCACGCGGGCAGGGG
TTTTGTCTGTCTGCTCAGGCTGCGGTCCCGGGGCCTGGTACCATATTGGGTGCATGGCAGGTGC
TCAGTGAAACACTGCTGAATAAATGAATGAATGCATCAGTGAGAATTTCTACTGTTAAAAAAAA
AAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254809 ⟹ XP_006254871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,271,017 (-)	NCBI
mRatBN7.2	18	54,957,668 - 55,000,714 (-)	NCBI
Rnor_6.0	18	56,826,546 - 56,870,738 (-)	NCBI
Rnor_5.0	18	56,048,373 - 56,099,860 (-)	NCBI

Sequence:

show sequence

TCCGGCGCGTGCGCGGTGAGTCCAGCCTGGCGACAGGATGTCGCCAGGAGGGTTGCGGGGAAAC
AGCTGCTGGACAGATGAGAACCTGTGGACATGGCTGACTTTGAAACAGATGAGGCCTCTTCCAA
GTCAGAGAGCCCTGAGCAGGAAGGCCAGGGTTCTGAGGACAAATCTCTGCTCCATCAGAGGCTG
GCCATCAGAGAGCTCATCGACACAGAAGTCTCCTACTTGCACACACTCCGACTCTGTACCTCTG
ACATCAGAGGCCACCTACAGCAGCTGCCGCCAGGAGATCTGGACATACTGTTCTCAAACATCGA
TGACATCATCCAAGTGAGCAGCAGATTCCTTCACGGGCTGCAGGAGACAGCCTGCAAGGAAGAG
AAACAAGCACACTTGATTGGTAACTTATTCCTGGAATTCCAAGAGGAGCTTGAACAAGTCTATA
AAGTCTACTGTGCCAACTATGACCAGGCCCTGCTGCTGGTCAAGGCATACCAGAAGGAGCCGGA
ACTCCAGAAGGAGATCCAGGGCATCATCGAAGCTGCAGTGCCACAAGCTGGACCTTCGGGTCTC
AGTTTCTTACTTGTAATCCCTCTGCAGAGGATTACCAAGTACCCCCTCCTGCTGCAGAAAATCC
TGGAGAACACACCCGCGGATGCCAGTGCCCACCCTGTCCTTCAGAGAGCCACCTCTGCCCTCCA
GGATGTGAACAGCAATATCAACGAGTACAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAA
GTGGAGCAGCTGAGCCTTCGGGAGCGGCTGGCCCGCATCAACACCCATACTCTTTCCAAGAAGA
CCACCAGGCTGAGCCAGCTGCTGAAGCAGGAGGCGGGGCTCGTACCCAGGACAGAAGACAAGGA
ATTTGATGACTTGGAGGAGAGATTCCAGTGGGTGTCTCTGTGCGTGACAGAGCTGAAGAGCAAT
GTGGCAGCTTACATGGATAATCTGGAGGCTTTCCTCTGCTTCCGGCCACACGAGCGGAACCTGG
ATATCCCTGGGGGAGCTGCGGAACAGTACTGCAGCCTAGCGAGGGACCTTCAGCTCCAGGCCTT
CCTGCAGTTTAAGCAGCGGTTAACAGGCCTGGTGTGGCAACCATTGTGCAGTCTGGCCAGAGCC
CTGGTTGGCCCTCAGAACTTGATCAAGAAACGTCTGGACAAACTCCTGGACTTCGAGAGAGTAG
AAGAAAAACTGTTGGATGTGGGCAGTGTGACCTATGAGGAAGAGGCGGCCCGGCACACGTACCA
GGCACTCAACTCCTTGATAGTGGCTGAGCTCCCACAGTTTAACCACCTCGTCATGCAGTGGCTG
GGCCAGATTCTGCGCACATTTGTGGTCCTCCAGAGAGACCTTGCAGACCAAGTGCTGCGAAGGG
CAGAGAGCAGCATGGCCCTGCTGCCTCATCGCCACGTCTCCGAGCCGGACTTCCAGAAGCTGCT
GGAGGACACGCTAGGCCAGAGCAGTAGCCAGCTCCGCCACTTTCGGGAGAGCTTTGAGAAAGTG
CTTCCACCCTCCACCTCGCAGCCACTCCTTCCAGGGTCTGAACACCAGATGCAATCTCTCCTCA
CCAGATATGGCCCTGGGAAGATATACCAGGTGACAAGCAACATCAATGGCACTGGGACCCTGGA
CCTGACACTACCTCGGGGCCAAATCGTGGCCCTTCTACAAAACAAGGACACCAAAGGCAACAAC
AGTCGCTGGCTGGTAGACACAGGGGGACACCGGGGATACGTGCCAGCTGGAAAACTTCAGCTAT
ATCACCCTATCAATCCCAGTGAGAAGGAGCCCAGACGCCAGACAGGGATGCCTGAAGACTACTG
GCTTCCAACCCCAGAGCCCACCCAACCCTCTGTCCCCACTGTCCCGACCATGAGCCAGGTGGTG
GCCGTGTACCCTTTTGTGGCCAGGAGCACCCACGAGTTGAGTCTACAGGCAGGCCAGCCTGTGA
CCATCCTGGAAGCCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGGTGGAAGCAAACGGACA
GAGGGGATATGTACCTTCCAACTTTCTGGCCAGGACTCCGAGTCCAACTCCCTGGGGCTGGAAT
CTTCCCTCTTAGCATGACCTCTTGGGAACCCCATTCCTAAGGAAAGGCGGAGGCTTAAAAGCTG
TGTGACCTAGGGGGGATGGCGCAAAGCACAGTGGGAATGGGAGAGGCGTGAAGGGCACCCAGAA
GGCAGCAGGAAGTGATTACTAGGCCTTACAGAATGCCTGGTGTGGGAGGCCACAGTGGGTGGTT
CGGCAGTGCCACTGTGATCTGCATAAAGAAGCCATCTCTAGGCCACAGCTGATTAGCTAAGGCT
TGCCACAGCTCGAAGCTCACCCTACCTCTTCTTACCTCTTTCATGTCTAGGATGAATGTGGCCT
GTGTTAGTTGCAGGTGGGGCCTCTCTGAAGACGACCAGGCCTGCTTGGCTCTGTAGTACACTTC
CCACAGTGTTGCCAGGAAACACCGTGGCTCGTCAGTCATCTTTTCTTTCTTACTGCCTTGCACT
GAGTTATTGTGAACAGTGAACTGTGGAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCT
GAGGAGATTGTCTACTGTGTCTGGGAATGGGTGTGGTCTCTGCATAGGTCTGGAACGTGTGTAC
AAACTTGTAGGTGGTTCCAGGGAAGAGGGGAATTTGAGGGTGAATTAGTGGGTGTGAGAGGCTG
ATTGCAATGGTAACTACTGGTGTTTTCTTCAGAGTAGGAAACAAAGGAACTTGTGACATAGGTG
ACTACTGGCCTGGCAAGTCGGGTAAGTGAGGGATAGCGTGGTTTCCTGGCTCTGGGTAGAAGAA
CCACGAGAACACAGGGGGCCTAGCTTTGCCTCTGAGGACCTGGAGGCAGTAAGGAGCTGAGGTT
GGGTAGATGTGAGGCCTAAGACATAGGACCCAATTGCAGTTTTCCACGTAGGGAAAAAAACAAA
ACAAAACTAAGTCATGGGAAGCAGTAGGGATGGCATGAGGCTGGAGGTGCAAGGGTCCCTTGTC
AACCAGGATGTGCGACACCAACACAAAGACTGTTAGTGGTGTCAGGATGGCCCAGCCATTGCCT
GGCGTGGGTTAGCAGAGTAAAGCAGTCCTGTTGCTACCTGTCACGTCCCATGTTCAGGCCAATG
GTGTCCTTTTCCTTAAACCCAGGCTCTGATTCCAGGCCCAGTCAGCATGGATTAACAATAGACA
ATTGTTAGGGGGTTCTGTTCTGTGTGAGCATCATGGAGTGTGCAAACTAACAAGGTTATGACAT
CACTAGGCAATATAATCTCATGGGACTTTGACATACACAAAGCCATTGCCTATAGCTGGCTGTT
GCATGGCGCATGACATATGGGTACAATCTAGGTAGCCAAAGTCCCAGTGCCTGGTACTTGATGA
GCAGGTCATTTCTCAAATCTGGAAACAGAAACCCCTCAAAGCAGACCTTGTTTCTGGATGACAG
GCCCACAGGGGCATGCTGGGTGTCGTCACTACTGGGCAATGTCCCTAGGCTGTTGCTTTAGGTC
AAGAGTCATCAGAAGATCCCAAGACAGTGAAAAGGGTGATCCACTCTGACCTGTGTACAACTGA
CAGATTTGGAATCGACCCTCTTGAGAGACAGAGAGTAAAACAGGTGGCTATTTCAGTGTTTCCA
AGACTACGTCTGTTTTTACAACTCAAGCGCCTGTTTGTTAACTTTGGCTTCTGAAGGGCTCTTG
AGAAAGGCAGCTCGCCTGTGTCAGACGGTCTGTAATGTGCCTCCTCTGGGCTTGTTGAAGCACC
AATGCCGGATGATGCAAGAGCAAGGCTACGCAGCTCCTTTCCCAACCTCAGGTTCTCTCGAAGG
ACGTTCTCAGCTCAGTTTCCTGTCCGTTTCCTTCTCGGGCTTCTAATCAAAACAGGAAGCATAG
ACAAAACACACGACAAAGCAGGCTGTACCTGCAGCTTCCACAGCTCGTTGTGAAGCTGAGACTC
TAGCTTGGAGTTCTTAGCATGGCTCTTCGCTGCTGCAATTACCTGGGTTGCCCTAAACGGCAGC
AAACCAGGAGCCCACCCAGAGAGAGCTGATGTCATTCATCTGGGCACGATCATGGCCTTGGGCT
TCAGGAAGCTACCCAGGTGAATCTCACAGGTAGCCACGTTAAGAACCTCTGCCTTAGACATGCA
GAGGTAAACAGCTAGACCTGGTCAGAGTTGGGACAGGGTAAGTTAAGTCATGCCCCACCTGAGC
TTTGCGCTGGCTCTCTAAGCAGGAAGCTTTGGAAGCAGTTTGGAGTAGGACAGCCTGTTCTGTC
AGGTCCCAAAATATATCTTTATTAAGTGCCGTTAAAGGGGACCTGAATGAAATTGAATGTTCTT
GTAGGCATAAGGGAGAAAAAAAATGAAATATACTTTGAACCAAGGCTATCTCATGAAGGAGAAA
TAAAAATGTGTCCAGTACATGTGGGTTATAGCTTCTCAGACCAGGGGGTGAGATTAAAGTCACT
GGAGAGTGAGAGAAAGCATACTGAGAAGATGGAGCATGGCCTGGATCTTCACCCAGGGACTCTG
TGTAATGTGCCTTTTTACCCCAATGCCTAGAGCCATTGCACTGTGTCTTATTTATTTCACTCTT
GGGCTGTCACGTGCACGCTCACAACGAGAATTGCCTAAGAATGGAACAGAACTCCCAGGAGTCG
AAGAGTGGTTCATATGGTACCCCCTGATCCTCAAAGTGAAGTGGGAACTCTTTAACCCTTTGAG
CCCCAACGTAGTTTAGGATACAGGGAGACGATTGTATTATCCAAGGGAAGACGAGGGAATTCTT
GAGTCGTGTGATGAGCGTGATGTGACCACTGGCAATAAAGGACTTAGTATGACTCCA

hide sequence

RefSeq Acc Id:

XM_006254811 ⟹ XP_006254873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,271,284 (-)	NCBI
mRatBN7.2	18	54,957,668 - 55,001,017 (-)	NCBI
Rnor_6.0	18	56,826,546 - 56,871,159 (-)	NCBI
Rnor_5.0	18	56,048,373 - 56,099,860 (-)	NCBI

Sequence:

show sequence

TTCCTTTGAGAGCTGGCTGTGATTTTGATACCCACTGCAGTCCTCTCCTTATGTTGCTTCTGGT
CATGTGTTAATCGCAGCAACGGAAAGTAAGTTAAGACACTGCCCTGGAGTTTTCTGGTTGCAGT
ACAGAAGAAACCCATTGCCAGCAGGAGAGCCCACTAGCCGACCTGTGGCCCTGGTTTTGGGGTG
AAGTCGGGCAGAACCTGTGGACATGGCTGACTTTGAAACAGATGAGGCCTCTTCCAAGTCAGAG
AGCCCTGAGCAGGAAGGCCAGGGTTCTGAGGACAAATCTCTGCTCCATCAGAGGCTGGCCATCA
GAGAGCTCATCGACACAGAAGTCTCCTACTTGCACACACTCCGACTCTGTACCTCTGACATCAG
AGGCCACCTACAGCAGCTGCCGCCAGGAGATCTGGACATACTGTTCTCAAACATCGATGACATC
ATCCAAGTGAGCAGCAGATTCCTTCACGGGCTGCAGGAGACAGCCTGCAAGGAAGAGAAACAAG
CACACTTGATTGGTAACTTATTCCTGGAATTCCAAGAGGAGCTTGAACAAGTCTATAAAGTCTA
CTGTGCCAACTATGACCAGGCCCTGCTGCTGGTCAAGGCATACCAGAAGGAGCCGGAACTCCAG
AAGGAGATCCAGGGCATCATCGAAGCTGCAGTGCCACAAGCTGGACCTTCGGGTCTCAGTTTCT
TACTTGTAATCCCTCTGCAGAGGATTACCAAGTACCCCCTCCTGCTGCAGAAAATCCTGGAGAA
CACACCCGCGGATGCCAGTGCCCACCCTGTCCTTCAGAGAGCCACCTCTGCCCTCCAGGATGTG
AACAGCAATATCAACGAGTACAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAGTGGAGC
AGCTGAGCCTTCGGGAGCGGCTGGCCCGCATCAACACCCATACTCTTTCCAAGAAGACCACCAG
GCTGAGCCAGCTGCTGAAGCAGGAGGCGGGGCTCGTACCCAGGACAGAAGACAAGGAATTTGAT
GACTTGGAGGAGAGATTCCAGTGGGTGTCTCTGTGCGTGACAGAGCTGAAGAGCAATGTGGCAG
CTTACATGGATAATCTGGAGGCTTTCCTCTGCTTCCGGCCACACGAGCGGAACCTGGATATCCC
TGGGGGAGCTGCGGAACAGTACTGCAGCCTAGCGAGGGACCTTCAGCTCCAGGCCTTCCTGCAG
TTTAAGCAGCGGTTAACAGGCCTGGTGTGGCAACCATTGTGCAGTCTGGCCAGAGCCCTGGTTG
GCCCTCAGAACTTGATCAAGAAACGTCTGGACAAACTCCTGGACTTCGAGAGAGTAGAAGAAAA
ACTGTTGGATGTGGGCAGTGTGACCTATGAGGAAGAGGCGGCCCGGCACACGTACCAGGCACTC
AACTCCTTGATAGTGGCTGAGCTCCCACAGTTTAACCACCTCGTCATGCAGTGGCTGGGCCAGA
TTCTGCGCACATTTGTGGTCCTCCAGAGAGACCTTGCAGACCAAGTGCTGCGAAGGGCAGAGAG
CAGCATGGCCCTGCTGCCTCATCGCCACGTCTCCGAGCCGGACTTCCAGAAGCTGCTGGAGGAC
ACGCTAGGCCAGAGCAGTAGCCAGCTCCGCCACTTTCGGGAGAGCTTTGAGAAAGTGCTTCCAC
CCTCCACCTCGCAGCCACTCCTTCCAGGGTCTGAACACCAGATGCAATCTCTCCTCACCAGATA
TGGCCCTGGGAAGATATACCAGGTGACAAGCAACATCAATGGCACTGGGACCCTGGACCTGACA
CTACCTCGGGGCCAAATCGTGGCCCTTCTACAAAACAAGGACACCAAAGGCAACAACAGTCGCT
GGCTGGTAGACACAGGGGGACACCGGGGATACGTGCCAGCTGGAAAACTTCAGCTATATCACCC
TATCAATCCCAGTGAGAAGGAGCCCAGACGCCAGACAGGGATGCCTGAAGACTACTGGCTTCCA
ACCCCAGAGCCCACCCAACCCTCTGTCCCCACTGTCCCGACCATGAGCCAGGTGGTGGCCGTGT
ACCCTTTTGTGGCCAGGAGCACCCACGAGTTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCT
GGAAGCCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGA
TATGTACCTTCCAACTTTCTGGCCAGGACTCCGAGTCCAACTCCCTGGGGCTGGAATCTTCCCT
CTTAGCATGACCTCTTGGGAACCCCATTCCTAAGGAAAGGCGGAGGCTTAAAAGCTGTGTGACC
TAGGGGGGATGGCGCAAAGCACAGTGGGAATGGGAGAGGCGTGAAGGGCACCCAGAAGGCAGCA
GGAAGTGATTACTAGGCCTTACAGAATGCCTGGTGTGGGAGGCCACAGTGGGTGGTTCGGCAGT
GCCACTGTGATCTGCATAAAGAAGCCATCTCTAGGCCACAGCTGATTAGCTAAGGCTTGCCACA
GCTCGAAGCTCACCCTACCTCTTCTTACCTCTTTCATGTCTAGGATGAATGTGGCCTGTGTTAG
TTGCAGGTGGGGCCTCTCTGAAGACGACCAGGCCTGCTTGGCTCTGTAGTACACTTCCCACAGT
GTTGCCAGGAAACACCGTGGCTCGTCAGTCATCTTTTCTTTCTTACTGCCTTGCACTGAGTTAT
TGTGAACAGTGAACTGTGGAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGGAGA
TTGTCTACTGTGTCTGGGAATGGGTGTGGTCTCTGCATAGGTCTGGAACGTGTGTACAAACTTG
TAGGTGGTTCCAGGGAAGAGGGGAATTTGAGGGTGAATTAGTGGGTGTGAGAGGCTGATTGCAA
TGGTAACTACTGGTGTTTTCTTCAGAGTAGGAAACAAAGGAACTTGTGACATAGGTGACTACTG
GCCTGGCAAGTCGGGTAAGTGAGGGATAGCGTGGTTTCCTGGCTCTGGGTAGAAGAACCACGAG
AACACAGGGGGCCTAGCTTTGCCTCTGAGGACCTGGAGGCAGTAAGGAGCTGAGGTTGGGTAGA
TGTGAGGCCTAAGACATAGGACCCAATTGCAGTTTTCCACGTAGGGAAAAAAACAAAACAAAAC
TAAGTCATGGGAAGCAGTAGGGATGGCATGAGGCTGGAGGTGCAAGGGTCCCTTGTCAACCAGG
ATGTGCGACACCAACACAAAGACTGTTAGTGGTGTCAGGATGGCCCAGCCATTGCCTGGCGTGG
GTTAGCAGAGTAAAGCAGTCCTGTTGCTACCTGTCACGTCCCATGTTCAGGCCAATGGTGTCCT
TTTCCTTAAACCCAGGCTCTGATTCCAGGCCCAGTCAGCATGGATTAACAATAGACAATTGTTA
GGGGGTTCTGTTCTGTGTGAGCATCATGGAGTGTGCAAACTAACAAGGTTATGACATCACTAGG
CAATATAATCTCATGGGACTTTGACATACACAAAGCCATTGCCTATAGCTGGCTGTTGCATGGC
GCATGACATATGGGTACAATCTAGGTAGCCAAAGTCCCAGTGCCTGGTACTTGATGAGCAGGTC
ATTTCTCAAATCTGGAAACAGAAACCCCTCAAAGCAGACCTTGTTTCTGGATGACAGGCCCACA
GGGGCATGCTGGGTGTCGTCACTACTGGGCAATGTCCCTAGGCTGTTGCTTTAGGTCAAGAGTC
ATCAGAAGATCCCAAGACAGTGAAAAGGGTGATCCACTCTGACCTGTGTACAACTGACAGATTT
GGAATCGACCCTCTTGAGAGACAGAGAGTAAAACAGGTGGCTATTTCAGTGTTTCCAAGACTAC
GTCTGTTTTTACAACTCAAGCGCCTGTTTGTTAACTTTGGCTTCTGAAGGGCTCTTGAGAAAGG
CAGCTCGCCTGTGTCAGACGGTCTGTAATGTGCCTCCTCTGGGCTTGTTGAAGCACCAATGCCG
GATGATGCAAGAGCAAGGCTACGCAGCTCCTTTCCCAACCTCAGGTTCTCTCGAAGGACGTTCT
CAGCTCAGTTTCCTGTCCGTTTCCTTCTCGGGCTTCTAATCAAAACAGGAAGCATAGACAAAAC
ACACGACAAAGCAGGCTGTACCTGCAGCTTCCACAGCTCGTTGTGAAGCTGAGACTCTAGCTTG
GAGTTCTTAGCATGGCTCTTCGCTGCTGCAATTACCTGGGTTGCCCTAAACGGCAGCAAACCAG
GAGCCCACCCAGAGAGAGCTGATGTCATTCATCTGGGCACGATCATGGCCTTGGGCTTCAGGAA
GCTACCCAGGTGAATCTCACAGGTAGCCACGTTAAGAACCTCTGCCTTAGACATGCAGAGGTAA
ACAGCTAGACCTGGTCAGAGTTGGGACAGGGTAAGTTAAGTCATGCCCCACCTGAGCTTTGCGC
TGGCTCTCTAAGCAGGAAGCTTTGGAAGCAGTTTGGAGTAGGACAGCCTGTTCTGTCAGGTCCC
AAAATATATCTTTATTAAGTGCCGTTAAAGGGGACCTGAATGAAATTGAATGTTCTTGTAGGCA
TAAGGGAGAAAAAAAATGAAATATACTTTGAACCAAGGCTATCTCATGAAGGAGAAATAAAAAT
GTGTCCAGTACATGTGGGTTATAGCTTCTCAGACCAGGGGGTGAGATTAAAGTCACTGGAGAGT
GAGAGAAAGCATACTGAGAAGATGGAGCATGGCCTGGATCTTCACCCAGGGACTCTGTGTAATG
TGCCTTTTTACCCCAATGCCTAGAGCCATTGCACTGTGTCTTATTTATTTCACTCTTGGGCTGT
CACGTGCACGCTCACAACGAGAATTGCCTAAGAATGGAACAGAACTCCCAGGAGTCGAAGAGTG
GTTCATATGGTACCCCCTGATCCTCAAAGTGAAGTGGGAACTCTTTAACCCTTTGAGCCCCAAC
GTAGTTTAGGATACAGGGAGACGATTGTATTATCCAAGGGAAGACGAGGGAATTCTTGAGTCGT
GTGATGAGCGTGATGTGACCACTGGCAATAAAGGACTTAGTATGACTCCA

hide sequence

RefSeq Acc Id:

XM_039096828 ⟹ XP_038952756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,271,050 (-)	NCBI
mRatBN7.2	18	54,957,668 - 55,000,714 (-)	NCBI

RefSeq Acc Id:

XM_039096832 ⟹ XP_038952760

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,253,846 (-)	NCBI
mRatBN7.2	18	54,957,668 - 54,983,488 (-)	NCBI

RefSeq Acc Id:

XM_039096833 ⟹ XP_038952761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,253,046 (-)	NCBI
mRatBN7.2	18	54,957,668 - 54,982,757 (-)	NCBI

RefSeq Acc Id:

XM_039096835 ⟹ XP_038952763

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,240,887 (-)	NCBI
mRatBN7.2	18	54,957,668 - 54,971,230 (-)	NCBI

RefSeq Acc Id:

XM_063277355 ⟹ XP_063133425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,228,033 - 57,253,846 (-)	NCBI

RefSeq Acc Id:

XR_010059572

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,219,473 - 57,271,074 (-)	NCBI

RefSeq Acc Id:

XR_010059573

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,205,621 - 57,271,074 (-)	NCBI

RefSeq Acc Id:

XR_010059574

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,230,880 - 57,271,074 (-)	NCBI

RefSeq Acc Id:

XR_010059575

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,205,621 - 57,253,698 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094444	(Get FASTA)	NCBI Sequence Viewer
	XP_006254871	(Get FASTA)	NCBI Sequence Viewer
	XP_006254873	(Get FASTA)	NCBI Sequence Viewer
	XP_038952756	(Get FASTA)	NCBI Sequence Viewer
	XP_038952760	(Get FASTA)	NCBI Sequence Viewer
	XP_038952761	(Get FASTA)	NCBI Sequence Viewer
	XP_038952763	(Get FASTA)	NCBI Sequence Viewer
	XP_063133425	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A1IGU3	(Get FASTA)	NCBI Sequence Viewer
	BAF43708	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037964.2

RefSeq Acc Id:

NP_001094444 ⟸ NM_001100974

- UniProtKB:

A1IGU3 (UniProtKB/Swiss-Prot), F1LQ74 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADFETDEASSKSESPEQEGQGSEDKSLLHQRLAIRELIDTEVSYLHTLRLCTSDIRGHLQQLP
PGDLDILFSNIDDIIQVSSRFLHGLQETACKEEKQAHLIGNLFLEFQEELEQVYKVYCANYDQA
LLLVKAYQKEPELQKEIQGIIEAAVPQAGPSGLSFLLVIPLQRITKYPLLLQKILENTPADASA
HPVLQRATSALQDVNSNINEYKMRKEVALKYTKVEQLSLRERLARINTHTLSKKTTRLSQLLKQ
EAGLVPRTEDKEFDDLEERFQWVSLCVTELKSNVAAYMDNLEAFLCFRPHERNLDIPGGAAEQY
CSLARDLQLQAFLQFKQRLTGLVWQPLCSLARALVGPQNLIKKRLDKLLDFERVEEKLLDVGSV
TYEEEAARHTYQALNSLIVAELPQFNHLVMQWLGQILRTFVVLQRDLADQVLRRAESSMALLPH
RHVSEPDFQKLLEDTLGQSSSQLRHFRESFEKVLPPSTSQPLLPGSEHQMQSLLTRYGPGKIYQ
VTSNINGTGTLDLTLPRGQIVALLQNKDTKGNNSRWLVDTGGHRGYVPAGKLQLYHPINPSEKE
PRRQTGMPEDYWLPTPEPTQPSVPTVPTMSQVVAVYPFVARSTHELSLQAGQPVTILEAQDKKG
NPEWSLVEANGQRGYVPSNFLARTPSPTPRGWNLPS

hide sequence

RefSeq Acc Id:	XP_006254873 ⟸ XM_006254811
- Peptide Label:	isoform X1
- UniProtKB:	A1IGU3 (UniProtKB/Swiss-Prot), F1LQ74 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADFETDEASSKSESPEQEGQGSEDKSLLHQRLAIRELIDTEVSYLHTLRLCTSDIRGHLQQLP PGDLDILFSNIDDIIQVSSRFLHGLQETACKEEKQAHLIGNLFLEFQEELEQVYKVYCANYDQA LLLVKAYQKEPELQKEIQGIIEAAVPQAGPSGLSFLLVIPLQRITKYPLLLQKILENTPADASA HPVLQRATSALQDVNSNINEYKMRKEVALKYTKVEQLSLRERLARINTHTLSKKTTRLSQLLKQ EAGLVPRTEDKEFDDLEERFQWVSLCVTELKSNVAAYMDNLEAFLCFRPHERNLDIPGGAAEQY CSLARDLQLQAFLQFKQRLTGLVWQPLCSLARALVGPQNLIKKRLDKLLDFERVEEKLLDVGSV TYEEEAARHTYQALNSLIVAELPQFNHLVMQWLGQILRTFVVLQRDLADQVLRRAESSMALLPH RHVSEPDFQKLLEDTLGQSSSQLRHFRESFEKVLPPSTSQPLLPGSEHQMQSLLTRYGPGKIYQ VTSNINGTGTLDLTLPRGQIVALLQNKDTKGNNSRWLVDTGGHRGYVPAGKLQLYHPINPSEKE PRRQTGMPEDYWLPTPEPTQPSVPTVPTMSQVVAVYPFVARSTHELSLQAGQPVTILEAQDKKG NPEWSLVEANGQRGYVPSNFLARTPSPTPWGWNLPS hide sequence

RefSeq Acc Id:	XP_006254871 ⟸ XM_006254809
- Peptide Label:	isoform X1
- UniProtKB:	A1IGU3 (UniProtKB/Swiss-Prot), F1LQ74 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADFETDEASSKSESPEQEGQGSEDKSLLHQRLAIRELIDTEVSYLHTLRLCTSDIRGHLQQLP PGDLDILFSNIDDIIQVSSRFLHGLQETACKEEKQAHLIGNLFLEFQEELEQVYKVYCANYDQA LLLVKAYQKEPELQKEIQGIIEAAVPQAGPSGLSFLLVIPLQRITKYPLLLQKILENTPADASA HPVLQRATSALQDVNSNINEYKMRKEVALKYTKVEQLSLRERLARINTHTLSKKTTRLSQLLKQ EAGLVPRTEDKEFDDLEERFQWVSLCVTELKSNVAAYMDNLEAFLCFRPHERNLDIPGGAAEQY CSLARDLQLQAFLQFKQRLTGLVWQPLCSLARALVGPQNLIKKRLDKLLDFERVEEKLLDVGSV TYEEEAARHTYQALNSLIVAELPQFNHLVMQWLGQILRTFVVLQRDLADQVLRRAESSMALLPH RHVSEPDFQKLLEDTLGQSSSQLRHFRESFEKVLPPSTSQPLLPGSEHQMQSLLTRYGPGKIYQ VTSNINGTGTLDLTLPRGQIVALLQNKDTKGNNSRWLVDTGGHRGYVPAGKLQLYHPINPSEKE PRRQTGMPEDYWLPTPEPTQPSVPTVPTMSQVVAVYPFVARSTHELSLQAGQPVTILEAQDKKG NPEWSLVEANGQRGYVPSNFLARTPSPTPWGWNLPS hide sequence

Ensembl Acc Id:

ENSRNOP00000069658 ⟸ ENSRNOT00000087188

Ensembl Acc Id:

ENSRNOP00000037964 ⟸ ENSRNOT00000032189

RefSeq Acc Id:	XP_038952756 ⟸ XM_039096828
- Peptide Label:	isoform X1
- UniProtKB:	A1IGU3 (UniProtKB/Swiss-Prot), F1LQ74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952760 ⟸ XM_039096832
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038952761 ⟸ XM_039096833
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038952763 ⟸ XM_039096835
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063133425 ⟸ XM_063277355
- Peptide Label:	isoform X2

Protein Domains

BAR DH SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A1IGU3-F1-model_v2	AlphaFold	A1IGU3	1-676	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700819

Promoter ID:

EPDNEW_R11340

Type:

initiation region

Name:

Arhgef37_1

Description:

Rho guanine nucleotide exchange factor 37

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	56,870,802 - 56,870,862	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560471	AgrOrtholog
BioCyc Gene	G2FUF-7325	BioCyc
Ensembl Genes	ENSRNOG00000025502	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000032189.4	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.900.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARHGEF37_SH3_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARHGEF37_SH3_C1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BAR_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DBL_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DH-domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Dynamin-Rho_GEF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:307398	UniProtKB/Swiss-Prot
NCBI Gene	307398	ENTREZGENE
PANTHER	NUCLEAR FUSION PROTEIN FUS2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 37	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RhoGEF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Arhgef37	PhenoGen
PROSITE	BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DH_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025502	RatGTEx
SMART	BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RhoGEF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF48065	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50044	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A1IGU3	ENTREZGENE, UniProtKB/Swiss-Prot
	F1LQ74	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-19	Arhgef37	Rho guanine nucleotide exchange factor 37	Arhgef37	Rho guanine nucleotide exchange factor (GEF) 37	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-05-25	Arhgef37	Rho guanine nucleotide exchange factor (GEF) 37	RGD1560471	similar to hypothetical protein 4933429F08	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1560471	similar to hypothetical protein 4933429F08	RGD1560471_predicted	similar to hypothetical protein 4933429F08 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1560471_predicted	similar to hypothetical protein 4933429F08 (predicted)	LOC307398	similar to hypothetical protein 4933429F08	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC307398	similar to hypothetical protein 4933429F08			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar