Bicdl1 (BICD family like cargo adaptor 1)

Gene: Bicdl1 (BICD family like cargo adaptor 1) Rattus norvegicus

Analyze

Symbol:

Bicdl1

Name:

BICD family like cargo adaptor 1

RGD ID:

1310292

Description:

Predicted to enable dynactin binding activity and small GTPase binding activity. Predicted to be involved in Golgi to secretory granule transport and neuron projection development. Predicted to be located in centrosome. Orthologous to human BICDL1 (BICD family like cargo adaptor 1); INTERACTS WITH 1-naphthyl isothiocyanate; acetamide; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

bicaudal D-related protein 1; BICD family-like cargo adapter 1; Ccdc64; coiled-coil domain containing 64; LOC304537; RGD1310292; similar to 2210403N09Rik protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BICDL1 (BICD family like cargo adaptor 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Bicdl1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bicdl1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BICDL1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BICDL1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bicdl1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BICDL1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BICDL1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bicdl1 (BICD family like cargo adaptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PET100 (PET100 cytochrome c oxidase chaperone)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Bicdl1 (BICD family like cargo adaptor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BICDL1 (BICD family like cargo adaptor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bicdl1 (BICD family like cargo adaptor 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32137	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	bicdl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	46,537,525 - 46,626,876 (+)	NCBI		GRCr8
mRatBN7.2	12	40,878,190 - 41,001,152 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	40,876,884 - 40,966,130 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	42,045,671 - 42,133,286 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	42,659,315 - 42,746,932 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	41,719,851 - 41,807,471 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	46,615,597 - 46,703,287 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	46,615,649 - 46,703,287 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	48,413,929 - 48,501,896 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	42,139,165 - 42,227,651 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	42,002,552 - 42,089,755 (+)	NCBI
Celera	12	42,501,234 - 42,589,137 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

acetamide (EXP)

acrylamide (EXP)

amphetamine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (EXP)

diuron (EXP)

dorsomorphin (ISO)

elemental selenium (ISO)

ethanol (ISO)

fipronil (EXP)

fonofos (ISO)

furan (EXP)

leflunomide (ISO)

mercury dichloride (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

parathion (ISO)

perfluorohexanesulfonic acid (ISO)

phenethyl isothiocyanate (EXP)

pirinixic acid (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

terbufos (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triclosan (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi to secretory granule transport (IBA,ISO)

neuron projection development (ISO)

vesicle transport along microtubule (IBA,IEA)

Cellular Component

centrosome (ISO)

cytoplasm (IEA)

Molecular Function

dynactin binding (ISO)

protein binding (ISO)

small GTPase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20360680

Genomics

Comparative Map Data

Bicdl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	46,537,525 - 46,626,876 (+)	NCBI		GRCr8
mRatBN7.2	12	40,878,190 - 41,001,152 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	40,876,884 - 40,966,130 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	42,045,671 - 42,133,286 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	42,659,315 - 42,746,932 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	41,719,851 - 41,807,471 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	46,615,597 - 46,703,287 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	46,615,649 - 46,703,287 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	48,413,929 - 48,501,896 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	42,139,165 - 42,227,651 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	42,002,552 - 42,089,755 (+)	NCBI
Celera	12	42,501,234 - 42,589,137 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

BICDL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	119,989,236 - 120,094,495 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	119,989,236 - 120,094,494 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	120,427,040 - 120,532,299 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	118,912,031 - 119,016,682 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	120,060,761 - 120,165,412 (+)	NCBI		Celera
Cytogenetic Map	12	q24.23	NCBI
HuRef	12	117,436,813 - 117,541,410 (+)	NCBI		HuRef
CHM1_1	12	120,395,574 - 120,500,257 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	119,976,368 - 120,081,656 (+)	NCBI		T2T-CHM13v2.0

Bicdl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	115,786,233 - 115,869,824 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	115,786,234 - 115,869,680 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	115,648,174 - 115,731,844 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	115,648,175 - 115,731,621 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	116,099,295 - 116,181,568 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	115,909,952 - 115,992,558 (-)	NCBI		MGSCv36	mm8
Celera	5	112,750,949 - 112,833,483 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	56.1	NCBI

Bicdl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	11,503,167 - 11,606,583 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	11,503,828 - 11,606,583 (-)	NCBI	ChiLan1.0	ChiLan1.0

BICDL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	128,053,327 - 128,156,803 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	128,049,706 - 128,153,182 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	117,566,086 - 117,670,093 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	120,943,987 - 121,045,936 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	120,942,469 - 121,045,936 (+)	Ensembl	panpan1.1		panPan2

BICDL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	15,959,077 - 16,060,492 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	15,959,071 - 16,059,226 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	15,963,768 - 16,065,832 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	16,226,452 - 16,328,477 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	16,226,452 - 16,327,211 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	16,195,871 - 16,289,553 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	16,264,861 - 16,366,949 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	16,305,721 - 16,407,968 (+)	NCBI		UU_Cfam_GSD_1.0

Bicdl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	146,313,903 - 146,405,990 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	813,622 - 904,883 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	812,780 - 904,879 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BICDL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	39,914,464 - 40,123,628 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	40,004,464 - 40,125,541 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	42,566,890 - 42,687,888 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BICDL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	115,339,209 - 115,446,889 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	115,339,334 - 115,443,059 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	129,660,830 - 129,769,480 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bicdl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	13,540,530 - 13,646,381 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	13,539,268 - 13,646,414 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Bicdl1
474 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610870	42828880	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	28064433	45899022	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	28064433	46669029	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	32103174	45899022	Rat

Markers in Region

RH131047

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	40,965,763 - 40,965,943 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	46,702,936 - 46,703,115	NCBI	Rnor6.0
Rnor_5.0	12	48,501,545 - 48,501,724	UniSTS	Rnor5.0
RGSC_v3.4	12	42,227,300 - 42,227,479	UniSTS	RGSC3.4
Celera	12	42,588,786 - 42,588,965	UniSTS
RH 3.4 Map	12	765.02	UniSTS
Cytogenetic Map	12	q16	UniSTS

RH144446

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	40,966,163 - 40,966,354 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	46,703,336 - 46,703,526	NCBI	Rnor6.0
Rnor_5.0	12	48,501,945 - 48,502,135	UniSTS	Rnor5.0
RGSC_v3.4	12	42,227,700 - 42,227,890	UniSTS	RGSC3.4
Celera	12	42,589,186 - 42,589,376	UniSTS
Cytogenetic Map	12	q16	UniSTS

RH140398

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	40,881,760 - 40,881,933 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	46,619,112 - 46,619,284	NCBI	Rnor6.0
Rnor_5.0	12	48,417,379 - 48,417,551	UniSTS	Rnor5.0
RGSC_v3.4	12	42,142,628 - 42,142,800	UniSTS	RGSC3.4
Celera	12	42,504,678 - 42,504,850	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1		7		15				60	20	12	5
Low	2	37	50	41	4	41	1	1	14	15	27	6	1
Below cutoff		6					7	10			2		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000086531 ⟹ ENSRNOP00000070515

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	40,877,277 - 40,966,130 (+)	Ensembl
Rnor_6.0 Ensembl	12	46,615,649 - 46,703,287 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089494 ⟹ ENSRNOP00000075484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	40,876,884 - 40,966,115 (+)	Ensembl
Rnor_6.0 Ensembl	12	46,615,704 - 46,700,358 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119377 ⟹ ENSRNOP00000086697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	40,876,884 - 40,966,115 (+)	Ensembl

RefSeq Acc Id:

NM_001191667 ⟹ NP_001178596

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	46,539,070 - 46,626,876 (+)	NCBI
mRatBN7.2	12	40,878,298 - 40,966,115 (+)	NCBI
Rnor_6.0	12	46,615,649 - 46,703,287 (+)	NCBI
Rnor_5.0	12	48,413,929 - 48,501,896 (+)	NCBI
Celera	12	42,501,234 - 42,589,137 (+)	NCBI

Sequence:

show sequence

ATGTCCGCCTTTTGCCTGGGCTTGGCCGGCCGAGCTTCAGCACCCGCCGAGCCGGACAGCGCCT
GCTGCATGGAGCTGCCCGCTGGGGCCGGGGACGCAGTCCGGAGTCCCGCCGCCGCCGCCGCCCT
TGTCTCTTTCCCCGGGGGTCCCGGGGAACTGGAACTGGCCTTAGAGGAGGAGCTGGCGTTGCTG
GCGGCCGGGGAGCGGCCGTCCGACCTCGGGGAGCATCCTCAGGCGGAGCCGGGGTCTCCGGCTG
AGGGGCACGGACCGCCGCCGCCGCCTACCCAGGATCCCGAGCTGCTGTCGGTGATCAGGCAGAA
GGAGAAGGATCTGGTGTTGGCGGCCCGGCTAGGCAAGGCGCTGCTCGAGAGGAACCAGGACATG
AGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTGGAGCACTTAGAGCAAGAGA
AGCATGAGCTGAGAAGGCGGTTTGAGAACCGAGAAGGGGAGTGGGAAGGACGAGTGTCCGAGCT
GGAGACGGACGTGAAGCAGCTACAGGACGAGCTGGAGAGGCAGCAGGTCCATCTTCGGGAAGCG
GATCGAGAAAAAACTCGCGCTGTCCAGGAACTGTCAGAACAGAACCAAAGGCTACTGGATCAAC
TGAGCAGGGCATCTGAAGTTGAGAGACAGCTATCCATGCAGGTCCATGCTCTCAAAGAAGACTT
TCGGGAGAAAAATTCATCCACCAACCAGCATATCATCCGGCTAGAGAGCCTTCAGGCCGAGATC
AAGATGCTGTCGGACCGAAAACGGGAGCTGGAGCATCGGCTCAGTGCCACCCTAGAGGAGAATG
ACCTGCTTCAAGGGACTGTGGAGGAGCTACAGGACCGGGTGCTGATCCTAGAAAGGCAGGGCCA
TGACAAAGACCTGCAGCTGCACCAGAGCCAGCTGGAGCTCCAGGAGGTCCGTCTGTCCTACCGG
CAGCTGCAGGTCAAAGTGGAGGAGCTGACGGAGGAGAGGAGCCTGCAGAGCTCGGCGGCCACCA
GCACGTCCCTGCTGTCAGAGATCGAGCAGAGCATGGAGGCTGAGGAGCTGGAGCAGGAGAGAGA
GCAGCTGAGGCTGCAGCTCTGGGAAGCCTACTGCCAGGTTCGCTATCTGTGCTCACACCTTCGA
GGGAATGACAGCGCCGATTCAGCCGTGTCCACAGACTCCTCCATGGATGAGTCCTCAGAGACCT
CATCCGCCAAGGACGTGCCTGCCGGCAGCCTGCGCACCGCCCTCAACGATCTCAAGAGGCTGAT
CCAGAGCATCGTGGACGGCGTGGAGCCCACGGTCACGCTGCTGAGTGTGGAGATGACCGCCCTG
AAGGAAGAAAGGGACAGACTCAGAGTGACATCTGAGGACAAGGAGCCCAAGGAGCAGCTTCAGA
AGGCCATCAGGGACCGGGACGAGGCCATTGCAAAGAAGAAGGCTGTGGAGCTGGAACTCGCCAA
GTGCAAGATGGACATGATGTCTCTCAACAGCCAGCTACTGGACGCCATTCAGCAGAAACTGAAC
CTCTCCCAGCAGCTTGAGGCCTGGCAGGATGACATGCACAGGGTCATTGACAGGCAGCTGATGG
ACACGCACCTGAAGGAACAGAGCCGGCCTGCTGCTGCCTTCCCTAGGGGCCACGGCGTAGGGCG
GGGGCAGGAACCCAGCACAGACGGCAAACGGCTCTTCTCCTTCTTCAGGAAAATTTAAGTGGGG
AGGAGTCTGGCCATTGAGATGGGGGGACTAGCAGCACCTGAAAAGGGTCCCCTTTAGCTGGAGC
TGGGCAGCTACACTGCCCGCCCACCTGCCCTGGGGCCCAGTTAGCTCCAGAGAGCTCACTCCCT
ATGTCAGCGTAATGGAGGCTGAGAGGTAGGGCCTGCTCTGTCCTCTGAAGGCTGCCCACCCCCC
ACACACACAAGGGACAGGAATGTATCTTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGCTT
GCCCAGGATCCTGTTAGTGAGCAGGGCTCAGCCACTTCCCATGCAGCCCACTGCTGGGCTCTGC
CACCCAGGCCCAGCTGAGCACAGCCCACCCTATAAAGGCTCTGCTGCCTCCTTGGTTTTGAACA
TGGGGAACAGATTGGGGCCTCCTGTGCATGCCTCAGGAGGCCTAAGCCTCCGCTCCTGCTCCAG
CCACTGGCCTGGAGTGTGGGGAGACACAGCCCTCACCCAAGTGCATGCACCTCTGCTGGAGCCC
CTGTACGGCAGGCGGCTCAGCCTACGGCTGTGAGGCCTAAGAACTGGGTGTACCCAAGCCCTGT
TGAGGCCGTCCTGCACCCCAGGGAAGGTCCTGTCTTCTGGCTGCCACCACTCCTCAGCTTCCTC
CAGTGCAGTCCTTAGCCCTAGGGAGGCCTGGGCCAGGCTGTGTCCCATTGGCCCTGTAGGCTTT
AGCCTTCCAGACTTTTCCCCCATCACGGGATAGGACTAGGAGGGCACTTGTCTTCCACAGCTCC
CTCCCACCTCAAATGCAACTTCTTGGCCAAGCCAAGCAAGTTCAGGCCACAAGAGTGGCCTTGG
AGGGGCCTGGTTTTACCACCCTCACACTGAAGGCAGCGTGGGTGCCACAGGGTAGATGGGGCAA
GGCTGCTGGGAGCCTCCAGATACTGCCCACCAGGTCTCTAAGGGACAAAGGCCTTCAGCCTGCT
GCTTCTGCTCCTTCCGCAGCAGCCACCCCATCTCAGCCGAGGCCCCAGCTCAAGGCTCTGTGGG
GCCGGCCTGCACTGCTCTCCACTCACTGAGCCTCCTCCCTCGACAGGGACAAGCACAGCAGGGC
TGAGCGACAGAATGTACTTACAGACATGTACATACCACAGTGCTGTAATTTTGTATGTAGCAAT
TGTGTAAATACACGTATGGATTTTATAATACACACATAAATCTATAAAGGCATATTTTTAGAAA
AACAGCGCACCACTGCTTCTTTTGGAAATAGTCTGAATAAGAATAAAATGAGTTTCTACAGA

hide sequence

RefSeq Acc Id:

XM_008769234 ⟹ XP_008767456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	46,537,525 - 46,626,876 (+)	NCBI
mRatBN7.2	12	40,878,197 - 40,966,115 (+)	NCBI
Rnor_6.0	12	46,615,599 - 46,703,287 (+)	NCBI

Sequence:

show sequence

CTGGCGCGCGCCGGCCGGGCCGCACCGCTGCGGGCTGGCGCGCGCGGGCCATGTCCGCCTTCTG
CCTGGGCTTGGCCGGCCGAGCTTCAGCACCCGCCGAGCCGGACAGCGCCTGCTGCATGGAGCTG
CCCGCTGGGGCCGGGGACGCAGTCCGGAGTCCCGCCGCCGCCGCCGCCCTTGTCTCTTTCCCCG
GGGGTCCCGGGGAACTGGAACTGGCCTTAGAGGAGGAGCTGGCGTTGCTGGCGGCCGGGGAGCG
GCCGTCCGACCTCGGGGAGCATCCTCAGGCGGAGCCGGGGTCTCCGGCTGAGGGGCACGGACCG
CCGCCGCCGCCTACCCAGGATCCCGAGCTGCTGTCGGTGATCAGGCAGAAGGAGAAGGATCTGG
TGTTGGCGGCCCGGCTAGGCAAGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGA
GCAGATGCACAAGGAGCTGACGGACAAGCTGGAGCACTTAGAGCAAGAGAAGCATGAGCTGAGA
AGGCGGTTTGAGAACCGAGAAGGGGAGTGGGAAGGACGAGTGTCCGAGCTGGAGACGGACGTGA
AGCAGCTACAGGACGAGCTGGAGAGGCAGCAGGTCCATCTTCGGGAAGCGGATCGAGAAAAAAC
TCGCGCTGTCCAGGAACTGTCAGAACAGAACCAAAGGCTACTGGATCAACTGAGCAGGGCATCT
GAAGTTGAGAGACAGCTATCCATGCAGGTCCATGCTCTCAAAGAAGACTTTCGGGAGAAAAATT
CATCCACCAACCAGCATATCATCCGGCTAGAGAGCCTTCAGGCCGAGATCAAGATGCTGTCGGA
CCGAAAACGGGAGCTGGAGCATCGGCTCAGTGCCACCCTAGAGGAGAATGACCTGCTTCAAGGG
ACTGTGGAGGAGCTACAGGACCGGGTGCTGATCCTAGAAAGGCAGGGCCATGACAAAGACCTGC
AGCTGCACCAGAGCCAGCTGGAGCTCCAGGAGGTCCGTCTGTCCTACCGGCAGCTGCAGGTCAA
AGTGGAGGAGCTGACGGAGGAGAGGAGCCTGCAGAGCTCGGCGGCCACCAGCACGTCCCTGCTG
TCAGAGATCGAGCAGAGCATGGAGGCTGAGGAGCTGGAGCAGGAGAGAGAGCAGCTGAGGCTGC
AGCTCTGGGAAGCCTACTGCCAGGTTCGCTATCTGTGCTCACACCTTCGAGGGAATGACAGCGC
CGATTCAGCCGTGTCCACAGACTCCTCCATGGATGAGTCCTCAGAGACCTCATCCGCCAAGGAC
GTGCCTGCCGGCAGCCTGCGCACCGCCCTCAACGATCTCAAGAGGCTGATCCAGAGCATCGTGG
ACGGCGTGGAGCCCACGGGCACCCGGAGAATGGATGACGAGTCCTTAGAAGAACAAGTGAGGCA
GACCAGTGAGGACTCAAGAGCCCTGAGGGAGCTCATGGAGGGAGAGAGGGGTAAACTGAGGCAG
AGCCTAGAAGAACTGCAGCAACTCCACAGTCAGGTCACGCTGCTGAGTGTGGAGATGACCGCCC
TGAAGGAAGAAAGGGACAGACTCAGAGTGACATCTGAGGACAAGGAGCCCAAGGAGCAGCTTCA
GAAGGCCATCAGGGACCGGGACGAGGCCATTGCAAAGAAGAAGGCTGTGGAGCTGGAACTCGCC
AAGTGCAAGATGGACATGATGTCTCTCAACAGCCAGCTACTGGACGCCATTCAGCAGAAACTGA
ACCTCTCCCAGCAGCTTGAGGCCTGGCAGGATGACATGCACAGGGTCATTGACAGGCAGCTGAT
GGACACGCACCTGAAGGAACAGAGCCGGCCTGCTGCTGCCTTCCCTAGGGGCCACGGCGTAGGG
CGGGGGCAGGAACCCAGCACAGACGGCAAACGGCTCTTCTCCTTCTTCAGGAAAATTTAAGTGG
GGAGGAGTCTGGCCATTGAGATGGGGGGACTAGCAGCACCTGAAAAGGGTCCCCTTTAGCTGGA
GCTGGGCAGCTACACTGCCCGCCCACCTGCCCTGGGGCCCAGTTAGCTCCAGAGAGCTCACTCC
CTATGTCAGCGTAATGGAGGCTGAGAGGTAGGGCCTGCTCTGTCCTCTGAAGGCTGCCCACCCC
CCACACACACAAGGGACAGGAATGTATCTTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGC
TTGCCCAGGATCCTGTTAGTGAGCAGGGCTCAGCCACTTCCCATGCAGCCCACTGCTGGGCTCT
GCCACCCAGGCCCAGCTGAGCACAGCCCACCCTATAAAGGCTCTGCTGCCTCCTTGGTTTTGAA
CATGGGGAACAGATTGGGGCCTCCTGTGCATGCCTCAGGAGGCCTAAGCCTCCGCTCCTGCTCC
AGCCACTGGCCTGGAGTGTGGGGAGACACAGCCCTCACCCAAGTGCATGCACCTCTGCTGGAGC
CCCTGTACGGCAGGCGGCTCAGCCTACGGCTGTGAGGCCTAAGAACTGGGTGTACCCAAGCCCT
GTTGAGGCCGTCCTGCACCCCAGGGAAGGTCCTGTCTTCTGGCTGCCACCACTCCTCAGCTTCC
TCCAGTGCAGTCCTTAGCCCTAGGGAGGCCTGGGCCAGGCTGTGTCCCATTGGCCCTGTAGGCT
TTAGCCTTCCAGACTTTTCCCCCATCACGGGATAGGACTAGGAGGGCACTTGTCTTCCACAGCT
CCCTCCCACCTCAAATGCAACTTCTTGGCCAAGCCAAGCAAGTTCAGGCCACAAGAGTGGCCTT
GGAGGGGCCTGGTTTTACCACCCTCACACTGAAGGCAGCGTGGGTGCCACAGGGTAGATGGGGC
AAGGCTGCTGGGAGCCTCCAGATACTGCCCACCAGGTCTCTAAGGGACAAAGGCCTTCAGCCTG
CTGCTTCTGCTCCTTCCGCAGCAGCCACCCCATCTCAGCCGAGGCCCCAGCTCAAGGCTCTGTG
GGGCCGGCCTGCACTGCTCTCCACTCACTGAGCCTCCTCCCTCGACAGGGACAAGCACAGCAGG
GCTGAGCGACAGAATGTACTTACAGACATGTACATACCACAGTGCTGTAATTTTGTATGTAGCA
ATTGTGTAAATACACGTATGGATTTTATAATACACACATAAATCTATAAAGGCATATTTTTAGA
AAAACAGCGCACCACTGCTTCTTTTGGAAATAGTCTGAATAAGAATAAAATGAGTTTCTACAGA

hide sequence

RefSeq Acc Id:

XM_063271347 ⟹ XP_063127417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	46,537,525 - 46,625,570 (+)	NCBI

RefSeq Acc Id:

XM_063271348 ⟹ XP_063127418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	46,601,722 - 46,626,876 (+)	NCBI

RefSeq Acc Id:

XR_010056386

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	46,537,525 - 46,625,475 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178596	(Get FASTA)	NCBI Sequence Viewer
	XP_008767456	(Get FASTA)	NCBI Sequence Viewer
	XP_063127417	(Get FASTA)	NCBI Sequence Viewer
	XP_063127418	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM13863	(Get FASTA)	NCBI Sequence Viewer
	EDM13864	(Get FASTA)	NCBI Sequence Viewer
	EDM13865	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070515.2
	ENSRNOP00000075484
	ENSRNOP00000075484.2
	ENSRNOP00000086697
	ENSRNOP00000086697.1

RefSeq Acc Id:

NP_001178596 ⟸ NM_001191667

- UniProtKB:

A0A8I6GEA9 (UniProtKB/TrEMBL), A6J1S4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAFCLGLAGRASAPAEPDSACCMELPAGAGDAVRSPAAAAALVSFPGGPGELELALEEELALL
AAGERPSDLGEHPQAEPGSPAEGHGPPPPPTQDPELLSVIRQKEKDLVLAARLGKALLERNQDM
SRQYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELETDVKQLQDELERQQVHLREA
DREKTRAVQELSEQNQRLLDQLSRASEVERQLSMQVHALKEDFREKNSSTNQHIIRLESLQAEI
KMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILERQGHDKDLQLHQSQLELQEVRLSYR
QLQVKVEELTEERSLQSSAATSTSLLSEIEQSMEAEELEQEREQLRLQLWEAYCQVRYLCSHLR
GNDSADSAVSTDSSMDESSETSSAKDVPAGSLRTALNDLKRLIQSIVDGVEPTVTLLSVEMTAL
KEERDRLRVTSEDKEPKEQLQKAIRDRDEAIAKKKAVELELAKCKMDMMSLNSQLLDAIQQKLN
LSQQLEAWQDDMHRVIDRQLMDTHLKEQSRPAAAFPRGHGVGRGQEPSTDGKRLFSFFRKI

hide sequence

RefSeq Acc Id:	XP_008767456 ⟸ XM_008769234
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAQ3 (UniProtKB/TrEMBL), A0A0G2JY46 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAFCLGLAGRASAPAEPDSACCMELPAGAGDAVRSPAAAAALVSFPGGPGELELALEEELALL AAGERPSDLGEHPQAEPGSPAEGHGPPPPPTQDPELLSVIRQKEKDLVLAARLGKALLERNQDM SRQYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELETDVKQLQDELERQQVHLREA DREKTRAVQELSEQNQRLLDQLSRASEVERQLSMQVHALKEDFREKNSSTNQHIIRLESLQAEI KMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILERQGHDKDLQLHQSQLELQEVRLSYR QLQVKVEELTEERSLQSSAATSTSLLSEIEQSMEAEELEQEREQLRLQLWEAYCQVRYLCSHLR GNDSADSAVSTDSSMDESSETSSAKDVPAGSLRTALNDLKRLIQSIVDGVEPTGTRRMDDESLE EQVRQTSEDSRALRELMEGERGKLRQSLEELQQLHSQVTLLSVEMTALKEERDRLRVTSEDKEP KEQLQKAIRDRDEAIAKKKAVELELAKCKMDMMSLNSQLLDAIQQKLNLSQQLEAWQDDMHRVI DRQLMDTHLKEQSRPAAAFPRGHGVGRGQEPSTDGKRLFSFFRKI hide sequence

RefSeq Acc Id:

ENSRNOP00000075484 ⟸ ENSRNOT00000089494

RefSeq Acc Id:

ENSRNOP00000070515 ⟸ ENSRNOT00000086531

RefSeq Acc Id:

ENSRNOP00000086697 ⟸ ENSRNOT00000119377

RefSeq Acc Id:	XP_063127417 ⟸ XM_063271347
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063127418 ⟸ XM_063271348
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JY46-F1-model_v2	AlphaFold	A0A0G2JY46	1-573	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310292	AgrOrtholog
BioCyc Gene	G2FUF-19013	BioCyc
Ensembl Genes	ENSRNOG00000056955	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086531.2	UniProtKB/TrEMBL
	ENSRNOT00000089494.2	UniProtKB/TrEMBL
	ENSRNOT00000119377	ENTREZGENE
	ENSRNOT00000119377.1	UniProtKB/TrEMBL
KEGG Report	rno:304537	UniProtKB/TrEMBL
NCBI Gene	304537	ENTREZGENE
PANTHER	BICD FAMILY-LIKE CARGO ADAPTER	UniProtKB/TrEMBL
	BICD FAMILY-LIKE CARGO ADAPTER 1	UniProtKB/TrEMBL
PhenoGen	Bicdl1	PhenoGen
RatGTEx	ENSRNOG00000056955	RatGTEx
UniProt	A0A0G2JY46	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2KAQ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GEA9	ENTREZGENE, UniProtKB/TrEMBL
	A6J1S4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-11	Bicdl1	BICD family like cargo adaptor 1	Ccdc64	coiled-coil domain containing 64	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-27	Ccdc64	coiled-coil domain containing 64	RGD1310292_predicted	similar to 2210403N09Rik protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310292_predicted	similar to 2210403N09Rik protein (predicted)	LOC304537_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC304537_predicted	similar to 2210403N09Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar