BICDL1 (BICD family like cargo adaptor 1) - Rat Genome Database

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Gene: BICDL1 (BICD family like cargo adaptor 1) Sus scrofa
Analyze
Symbol: BICDL1
Name: BICD family like cargo adaptor 1
RGD ID: 13996632
Description: ENCODES a protein that exhibits dynactin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN neuron projection development (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BICD family-like cargo adapter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1439,914,464 - 40,123,628 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,004,464 - 40,125,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,566,890 - 42,687,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (ISO)
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BICDL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1439,914,464 - 40,123,628 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,004,464 - 40,125,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,566,890 - 42,687,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BICDL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812119,989,236 - 120,094,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12119,989,236 - 120,094,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3712120,427,040 - 120,532,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612118,912,031 - 119,016,682 (+)NCBINCBI36Build 36hg18NCBI36
Celera12120,060,761 - 120,165,412 (+)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12117,436,813 - 117,541,410 (+)NCBIHuRef
CHM1_112120,395,574 - 120,500,257 (+)NCBICHM1_1
T2T-CHM13v2.012119,976,368 - 120,081,656 (+)NCBIT2T-CHM13v2.0
Bicdl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,786,233 - 115,869,824 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,786,234 - 115,869,680 (-)EnsemblGRCm39 Ensembl
GRCm385115,648,174 - 115,731,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,648,175 - 115,731,621 (-)EnsemblGRCm38mm10GRCm38
MGSCv375116,099,295 - 116,181,568 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,909,952 - 115,992,558 (-)NCBIMGSCv36mm8
Celera5112,750,949 - 112,833,483 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.1NCBI
Bicdl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,537,525 - 46,626,876 (+)NCBIGRCr8
mRatBN7.21240,878,190 - 41,001,152 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,876,884 - 40,966,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,045,671 - 42,133,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,659,315 - 42,746,932 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01241,719,851 - 41,807,471 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01246,615,597 - 46,703,287 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,615,649 - 46,703,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,413,929 - 48,501,896 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,139,165 - 42,227,651 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,002,552 - 42,089,755 (+)NCBI
Celera1242,501,234 - 42,589,137 (+)NCBICelera
Cytogenetic Map12q16NCBI
Bicdl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,503,167 - 11,606,583 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,503,828 - 11,606,583 (-)NCBIChiLan1.0ChiLan1.0
BICDL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,053,327 - 128,156,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,049,706 - 128,153,182 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012117,566,086 - 117,670,093 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112120,943,987 - 121,045,936 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12120,942,469 - 121,045,936 (+)Ensemblpanpan1.1panPan2
BICDL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12615,959,077 - 16,060,492 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2615,959,071 - 16,059,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2615,963,768 - 16,065,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,226,452 - 16,328,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,226,452 - 16,327,211 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,195,871 - 16,289,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,264,861 - 16,366,949 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,305,721 - 16,407,968 (+)NCBIUU_Cfam_GSD_1.0
Bicdl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,313,903 - 146,405,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668813,622 - 904,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668812,780 - 904,879 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICDL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,339,209 - 115,446,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,339,334 - 115,443,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,660,830 - 129,769,480 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicdl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,540,530 - 13,646,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,539,268 - 13,646,414 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BICDL1
1844 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 3 23 3 2 5 13 11 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000010846   ⟹   ENSSSCP00000010563
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1439,914,464 - 40,123,628 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000055020   ⟹   ENSSSCP00000031502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,003,686 - 40,123,635 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059878   ⟹   ENSSSCP00000058589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,003,686 - 40,123,628 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000061580   ⟹   ENSSSCP00000046951
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,004,366 - 40,123,628 (+)Ensembl
RefSeq Acc Id: XM_001928043   ⟹   XP_001928078
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11440,004,466 - 40,125,541 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005670702   ⟹   XP_005670759
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11440,004,465 - 40,125,541 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005670703   ⟹   XP_005670760
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11440,004,466 - 40,125,541 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005670704   ⟹   XP_005670761
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11440,004,465 - 40,125,541 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021074227   ⟹   XP_020929886
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11440,004,464 - 40,122,229 (+)NCBI
Sequence:
RefSeq Acc Id: XR_307437
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11440,004,464 - 40,125,541 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020929886   ⟸   XM_021074227
- Peptide Label: isoform X3
- UniProtKB: A0A8D0SNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005670759   ⟸   XM_005670702
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BND8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005670761   ⟸   XM_005670704
- Peptide Label: isoform X4
- UniProtKB: A0A8D1W1R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005670760   ⟸   XM_005670703
- Peptide Label: isoform X2
- UniProtKB: A0A480QJB9 (UniProtKB/TrEMBL),   A0A8D2BND8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001928078   ⟸   XM_001928043
- Peptide Label: isoform X5
- UniProtKB: A0A480VWJ3 (UniProtKB/TrEMBL),   A0A8D1C1H9 (UniProtKB/TrEMBL),   A0A8D1GGM5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000010563   ⟸   ENSSSCT00000010846
Ensembl Acc Id: ENSSSCP00000058589   ⟸   ENSSSCT00000059878
Ensembl Acc Id: ENSSSCP00000031502   ⟸   ENSSSCT00000055020
Ensembl Acc Id: ENSSSCP00000046951   ⟸   ENSSSCT00000061580


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009896 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025049810 UniProtKB/TrEMBL
  ENSSSCG00030018126 UniProtKB/TrEMBL
  ENSSSCG00045003713 UniProtKB/TrEMBL
  ENSSSCG00060054908 UniProtKB/TrEMBL
  ENSSSCG00065024839 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010846.5 UniProtKB/TrEMBL
  ENSSSCT00000061580 ENTREZGENE
  ENSSSCT00000061580.3 UniProtKB/TrEMBL
  ENSSSCT00025067883.1 UniProtKB/TrEMBL
  ENSSSCT00025068213.1 UniProtKB/TrEMBL
  ENSSSCT00025068522.1 UniProtKB/TrEMBL
  ENSSSCT00030025095.1 UniProtKB/TrEMBL
  ENSSSCT00045006166.1 UniProtKB/TrEMBL
  ENSSSCT00060074776.1 UniProtKB/TrEMBL
  ENSSSCT00060074806.1 UniProtKB/TrEMBL
  ENSSSCT00060074835.1 UniProtKB/TrEMBL
  ENSSSCT00065033228.1 UniProtKB/TrEMBL
InterPro Spindly/BICDR_Dynein_Adapter UniProtKB/TrEMBL
KEGG Report ssc:100153008 UniProtKB/TrEMBL
NCBI Gene BICDL1 ENTREZGENE
PANTHER BICD FAMILY-LIKE CARGO ADAPTER UniProtKB/TrEMBL
  BICD FAMILY-LIKE CARGO ADAPTER 1 UniProtKB/TrEMBL
UniProt A0A287AS92_PIG UniProtKB/TrEMBL
  A0A480QJB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A480VWJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SNI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C1H9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GGM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W1R0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BND8 ENTREZGENE, UniProtKB/TrEMBL
  F1RJK6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85820 ENTREZGENE