Bicdl1 (BICD family like cargo adaptor 1) - Rat Genome Database

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Gene: Bicdl1 (BICD family like cargo adaptor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Bicdl1
Name: BICD family like cargo adaptor 1
RGD ID: 12673812
Description: ENCODES a protein that exhibits dynactin binding (inferred); small GTPase binding (inferred); INVOLVED IN Golgi to secretory granule transport (inferred); neuron projection development (inferred); vesicle transport along microtubule (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centrosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bicaudal D-related protein 1; BICD family like cargo adaptor 1, transcript variant X1; BICD family like cargo adaptor 1, transcript variant X2; BICD family like cargo adaptor 1, transcript variant X3; BICD family-like cargo adapter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,313,903 - 146,405,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668813,622 - 904,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668812,780 - 904,879 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA)
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bicdl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,313,903 - 146,405,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668813,622 - 904,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668812,780 - 904,879 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICDL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812119,989,236 - 120,094,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12119,989,236 - 120,094,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3712120,427,040 - 120,532,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612118,912,031 - 119,016,682 (+)NCBINCBI36Build 36hg18NCBI36
Celera12120,060,761 - 120,165,412 (+)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12117,436,813 - 117,541,410 (+)NCBIHuRef
CHM1_112120,395,574 - 120,500,257 (+)NCBICHM1_1
T2T-CHM13v2.012119,976,368 - 120,081,656 (+)NCBIT2T-CHM13v2.0
Bicdl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,786,233 - 115,869,824 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,786,234 - 115,869,680 (-)EnsemblGRCm39 Ensembl
GRCm385115,648,174 - 115,731,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,648,175 - 115,731,621 (-)EnsemblGRCm38mm10GRCm38
MGSCv375116,099,295 - 116,181,568 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,909,952 - 115,992,558 (-)NCBIMGSCv36mm8
Celera5112,750,949 - 112,833,483 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.1NCBI
Bicdl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,537,525 - 46,626,876 (+)NCBIGRCr8
mRatBN7.21240,878,190 - 41,001,152 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,876,884 - 40,966,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,045,671 - 42,133,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,659,315 - 42,746,932 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01241,719,851 - 41,807,471 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01246,615,597 - 46,703,287 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,615,649 - 46,703,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,413,929 - 48,501,896 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,139,165 - 42,227,651 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,002,552 - 42,089,755 (+)NCBI
Celera1242,501,234 - 42,589,137 (+)NCBICelera
Cytogenetic Map12q16NCBI
Bicdl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,503,167 - 11,606,583 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,503,828 - 11,606,583 (-)NCBIChiLan1.0ChiLan1.0
BICDL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,053,327 - 128,156,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,049,706 - 128,153,182 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012117,566,086 - 117,670,093 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112120,943,987 - 121,045,936 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12120,942,469 - 121,045,936 (+)Ensemblpanpan1.1panPan2
BICDL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12615,959,077 - 16,060,492 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2615,959,071 - 16,059,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2615,963,768 - 16,065,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,226,452 - 16,328,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,226,452 - 16,327,211 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,195,871 - 16,289,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,264,861 - 16,366,949 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,305,721 - 16,407,968 (+)NCBIUU_Cfam_GSD_1.0
BICDL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1439,914,464 - 40,123,628 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,004,464 - 40,125,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,566,890 - 42,687,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BICDL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,339,209 - 115,446,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,339,334 - 115,443,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,660,830 - 129,769,480 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicdl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,540,530 - 13,646,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,539,268 - 13,646,414 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014031   ⟹   ENSSTOP00000012571
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936668813,622 - 904,883 (-)Ensembl
RefSeq Acc Id: XM_040289407   ⟹   XP_040145341
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118146,313,903 - 146,405,990 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040145341 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012571.3
GenBank Protein KAG3278920 (Get FASTA)   NCBI Sequence Viewer  
  KAG3278921 (Get FASTA)   NCBI Sequence Viewer  
  KAG3278922 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040145341   ⟸   XM_040289407
- UniProtKB: I3MM55 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000012571   ⟸   ENSSTOT00000014031


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014021 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014031.3 UniProtKB/TrEMBL
NCBI Gene Bicdl1 ENTREZGENE
PANTHER BICD FAMILY-LIKE CARGO ADAPTER UniProtKB/TrEMBL
  BICD FAMILY-LIKE CARGO ADAPTER 1 UniProtKB/TrEMBL
UniProt I3MM55 ENTREZGENE, UniProtKB/TrEMBL