Bicdl1 (BICD family like cargo adaptor 1) - Rat Genome Database

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Gene: Bicdl1 (BICD family like cargo adaptor 1) Heterocephalus glaber
Analyze
Symbol: Bicdl1
Name: BICD family like cargo adaptor 1
RGD ID: 18931948
Description: ENCODES a protein that exhibits dynactin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN neuron projection development (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bicaudal D-related protein 1; BICD family-like cargo adapter 1; CCDC64
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,540,530 - 13,646,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,539,268 - 13,646,414 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (ISO)
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bicdl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,540,530 - 13,646,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,539,268 - 13,646,414 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BICDL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812119,989,236 - 120,094,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12119,989,236 - 120,094,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3712120,427,040 - 120,532,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612118,912,031 - 119,016,682 (+)NCBINCBI36Build 36hg18NCBI36
Celera12120,060,761 - 120,165,412 (+)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12117,436,813 - 117,541,410 (+)NCBIHuRef
CHM1_112120,395,574 - 120,500,257 (+)NCBICHM1_1
T2T-CHM13v2.012119,976,368 - 120,081,656 (+)NCBIT2T-CHM13v2.0
Bicdl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,786,233 - 115,869,824 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,786,234 - 115,869,680 (-)EnsemblGRCm39 Ensembl
GRCm385115,648,174 - 115,731,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,648,175 - 115,731,621 (-)EnsemblGRCm38mm10GRCm38
MGSCv375116,099,295 - 116,181,568 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,909,952 - 115,992,558 (-)NCBIMGSCv36mm8
Celera5112,750,949 - 112,833,483 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.1NCBI
Bicdl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,537,525 - 46,626,876 (+)NCBIGRCr8
mRatBN7.21240,878,190 - 41,001,152 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,876,884 - 40,966,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,045,671 - 42,133,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,659,315 - 42,746,932 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01241,719,851 - 41,807,471 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01246,615,597 - 46,703,287 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,615,649 - 46,703,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,413,929 - 48,501,896 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,139,165 - 42,227,651 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,002,552 - 42,089,755 (+)NCBI
Celera1242,501,234 - 42,589,137 (+)NCBICelera
Cytogenetic Map12q16NCBI
Bicdl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,503,167 - 11,606,583 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,503,828 - 11,606,583 (-)NCBIChiLan1.0ChiLan1.0
BICDL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,053,327 - 128,156,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,049,706 - 128,153,182 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012117,566,086 - 117,670,093 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112120,943,987 - 121,045,936 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12120,942,469 - 121,045,936 (+)Ensemblpanpan1.1panPan2
BICDL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12615,959,077 - 16,060,492 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2615,959,071 - 16,059,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2615,963,768 - 16,065,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,226,452 - 16,328,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,226,452 - 16,327,211 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,195,871 - 16,289,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,264,861 - 16,366,949 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,305,721 - 16,407,968 (+)NCBIUU_Cfam_GSD_1.0
Bicdl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,313,903 - 146,405,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668813,622 - 904,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668812,780 - 904,879 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICDL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1439,914,464 - 40,123,628 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,004,464 - 40,125,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,566,890 - 42,687,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BICDL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,339,209 - 115,446,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,339,334 - 115,443,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,660,830 - 129,769,480 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020305   ⟹   ENSHGLP00000020105
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474713,540,530 - 13,646,381 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000020306   ⟹   ENSHGLP00000020106
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474713,543,441 - 13,588,452 (-)Ensembl
RefSeq Acc Id: XM_021257357   ⟹   XP_021113016
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474713,539,268 - 13,646,414 (-)NCBI
RefSeq Acc Id: XM_021257358   ⟹   XP_021113017
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474713,539,269 - 13,646,412 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021113016 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113017 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020105
GenBank Protein JAO01360 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021113016   ⟸   XM_021257357
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JAR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113017   ⟸   XM_021257358
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JAR0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020105   ⟸   ENSHGLT00000020305
Ensembl Acc Id: ENSHGLP00000020106   ⟸   ENSHGLT00000020306


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014394 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020305 ENTREZGENE
InterPro Spindly/BICDR_Dynein_Adapter UniProtKB/TrEMBL
NCBI Gene Bicdl1 ENTREZGENE
PANTHER BICD FAMILY-LIKE CARGO ADAPTER UniProtKB/TrEMBL
  BICD FAMILY-LIKE CARGO ADAPTER 1 UniProtKB/TrEMBL
UniProt A0A0P6JAR0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SXH1_HETGA UniProtKB/TrEMBL
  A0AAX6SYV2_HETGA UniProtKB/TrEMBL